Wall clock time and date at job start Tue Mar 31 2020 12:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 N 1.46503 * 109.46833 * 120.00371 * 2 1 3 5 5 C 1.46504 * 119.99518 * 304.58372 * 4 2 1 6 6 C 1.50700 * 109.47273 * 263.14293 * 5 4 2 7 7 H 1.08005 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00174 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00303 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00024 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47084 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46598 * 120.00300 * 10 8 6 13 13 H 1.48504 * 109.47248 * 240.00464 * 10 8 6 14 14 C 1.34772 * 120.00342 * 124.58983 * 4 2 1 15 15 O 1.21361 * 119.99974 * 354.66651 * 14 4 2 16 16 C 1.49359 * 120.00258 * 174.67230 * 14 4 2 17 17 O 1.21372 * 119.99572 * 0.83806 * 16 14 4 18 18 N 1.34766 * 120.00005 * 180.83260 * 16 14 4 19 19 C 1.39754 * 120.00163 * 185.43539 * 18 16 14 20 20 C 1.39051 * 120.00797 * 209.44784 * 19 18 16 21 21 C 1.38196 * 120.23476 * 180.02562 * 20 19 18 22 22 C 1.38028 * 120.23048 * 359.70684 * 21 20 19 23 23 C 1.39645 * 119.99855 * 0.55285 * 22 21 20 24 24 C 1.43200 * 120.11311 * 179.74734 * 23 22 21 25 25 N 9.24274 * 99.14278 * 122.58566 * 2 1 3 26 26 C 1.38650 * 119.99958 * 29.47223 * 19 18 16 27 27 H 1.08994 * 109.46975 * 300.00148 * 1 2 3 28 28 H 1.08999 * 109.46605 * 59.99954 * 1 2 3 29 29 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47117 * 239.99477 * 2 1 3 31 31 H 1.08995 * 109.47187 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47412 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.47013 * 60.00309 * 3 2 1 34 34 H 1.08999 * 109.47229 * 23.14728 * 5 4 2 35 35 H 1.09004 * 109.46965 * 143.14829 * 5 4 2 36 36 H 0.96995 * 120.00574 * 179.97438 * 9 8 6 37 37 H 0.97000 * 120.00412 * 5.43721 * 18 16 14 38 38 H 1.08002 * 119.87974 * 0.03140 * 20 19 18 39 39 H 1.07998 * 119.88504 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99887 * 180.29430 * 22 21 20 41 41 H 1.07999 * 120.11488 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5834 -0.2514 2.5244 6 6 2.6236 0.6645 3.1162 7 1 3.5190 0.8965 2.5585 8 6 2.4319 1.2070 4.3691 9 7 1.3414 0.9250 5.0480 10 14 3.7216 2.3418 5.1029 11 1 4.8460 2.4978 4.1456 12 1 3.1154 3.6699 5.3745 13 1 4.2284 1.7601 6.3718 14 6 2.8676 -1.7301 1.0747 15 8 3.1523 -2.1558 -0.0256 16 6 3.4585 -2.3582 2.2942 17 8 3.1620 -1.9423 3.3952 18 7 4.3208 -3.3866 2.1720 19 6 4.7857 -4.0480 3.3120 20 6 6.0452 -4.6372 3.3091 21 6 6.5094 -5.2929 4.4336 22 6 5.7284 -5.3622 5.5695 23 6 4.4598 -4.7786 5.5814 24 6 3.6453 -4.8538 6.7568 25 7 2.9987 -4.9145 7.6889 26 6 3.9908 -4.1171 4.4459 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 0.6364 0.2815 2.4388 35 1 1.4545 -1.1200 3.1702 36 1 1.2067 1.3063 5.9296 37 1 4.6188 -3.6679 1.2928 38 1 6.6629 -4.5822 2.4248 39 1 7.4887 -5.7481 4.4252 40 1 6.0968 -5.8714 6.4478 41 1 3.0119 -3.6609 4.4501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527354327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:52 Heat of formation + Delta-G solvation = 4.956746 kcal Electronic energy + Delta-G solvation = -26250.901820 eV Core-core repulsion = 22517.968176 eV Total energy + Delta-G solvation = -3732.933644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76076 -39.41240 -37.94144 -36.42892 -36.15037 -34.51439 -32.83416 -31.39720 -31.24303 -29.84063 -27.25635 -26.76688 -24.97175 -24.06075 -23.01775 -22.49899 -20.48018 -19.34313 -18.66219 -17.15344 -16.71087 -16.51253 -16.34024 -15.77009 -15.45611 -15.02794 -14.70996 -14.23235 -14.05128 -13.90729 -13.71855 -13.45782 -13.21309 -13.09159 -12.74904 -12.56885 -12.35081 -12.26502 -11.96930 -11.81745 -11.71929 -11.60682 -11.40691 -11.04796 -10.89413 -10.86051 -10.59909 -10.33514 -10.21806 -9.96877 -9.61380 -9.05433 -8.74669 -8.32851 -8.14336 -7.88851 -6.04422 -4.05498 0.72806 1.20416 2.05275 2.66517 2.83141 2.99378 3.28925 3.37755 3.39526 3.71953 3.86763 3.96633 4.05763 4.44019 4.77485 4.91359 4.97797 5.02313 5.32085 5.34067 5.35999 5.42996 5.54942 5.70161 5.75985 6.00345 6.05013 6.10014 6.20079 6.24100 6.26820 6.32226 6.35844 6.58976 6.69458 6.85937 6.88959 7.25303 7.36300 7.46406 7.57114 7.84617 8.04242 8.16299 8.25466 8.58907 8.93835 9.56790 11.04480 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.005180 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.336144 B = 5404.525325 C = 6817.055643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.155 4.155 4 N -0.552 5.552 5 C 0.227 3.773 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.889 5.889 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.508 3.492 15 O -0.563 6.563 16 C 0.487 3.513 17 O -0.424 6.424 18 N -0.662 5.662 19 C 0.164 3.836 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.097 4.097 23 C -0.006 4.006 24 C 0.259 3.741 25 N -0.417 5.417 26 C -0.079 4.079 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.419 0.581 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -9.962 -7.242 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.282 5.282 5 C 0.108 3.892 6 C -0.547 4.547 7 H 0.072 0.928 8 C -0.133 4.133 9 N -0.528 5.528 10 Si 0.717 3.283 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.290 3.710 15 O -0.445 6.445 16 C 0.268 3.732 17 O -0.290 6.290 18 N -0.310 5.310 19 C 0.068 3.932 20 C -0.145 4.145 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.010 4.010 24 C -0.057 4.057 25 N -0.092 5.092 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.256 0.744 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.815 -9.802 -5.402 12.613 hybrid contribution 1.150 0.747 -0.165 1.381 sum 6.965 -9.056 -5.567 12.709 Atomic orbital electron populations 1.22133 0.94989 1.02007 1.02607 1.21048 0.94119 0.93591 0.88305 1.22086 1.01390 0.95425 1.02373 1.48383 1.41291 1.28067 1.10504 1.19936 0.95997 0.97338 0.75888 1.21185 1.04952 1.27085 1.01448 0.92755 1.24780 0.95350 0.96554 0.96574 1.69906 1.25896 1.44287 1.12745 0.86589 0.81893 0.80443 0.79358 1.19936 1.21107 1.21001 1.19676 0.81087 0.82030 0.88188 1.90647 1.62687 1.63926 1.27226 1.20507 0.80964 0.80484 0.91205 1.91011 1.54443 1.56980 1.26603 1.43287 1.46369 1.32605 1.08750 1.17533 0.92692 0.95078 0.87887 1.21107 0.93384 1.00122 0.99878 1.20798 0.99838 0.99203 0.91979 1.21077 0.92431 0.99304 0.98990 1.15792 0.93435 1.02971 0.88817 1.25626 0.93416 0.93658 0.93001 1.81225 1.08554 1.08427 1.11002 1.21364 1.01116 0.96745 0.90982 0.91186 0.91936 0.92767 0.89248 0.92777 0.92739 0.90365 0.94464 0.92057 0.92915 0.74360 0.84885 0.84703 0.85131 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.10 37.16 0.34 -2.05 16 2 C 0.13 2.27 3.25 -67.93 -0.22 2.05 16 3 C -0.15 -2.56 8.92 37.16 0.33 -2.23 16 4 N -0.55 -11.12 2.38 -168.00 -0.40 -11.52 16 5 C 0.23 5.35 4.11 -5.19 -0.02 5.33 16 6 C -0.51 -13.18 6.82 -34.44 -0.24 -13.41 16 7 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 10 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 14 C 0.51 9.94 7.67 -11.63 -0.09 9.85 16 15 O -0.56 -10.92 15.83 5.49 0.09 -10.83 16 16 C 0.49 9.12 7.48 -11.63 -0.09 9.03 16 17 O -0.42 -9.38 9.54 5.48 0.05 -9.33 16 18 N -0.66 -9.52 5.33 -10.33 -0.06 -9.57 16 19 C 0.16 2.18 6.34 -83.79 -0.53 1.65 16 20 C -0.12 -1.22 9.94 -39.30 -0.39 -1.61 16 21 C -0.10 -0.85 10.02 -39.67 -0.40 -1.25 16 22 C -0.10 -0.96 9.75 -39.13 -0.38 -1.34 16 23 C -0.01 -0.08 5.73 -106.97 -0.61 -0.70 16 24 C 0.26 3.99 15.33 -22.47 -0.34 3.65 16 25 N -0.42 -7.33 18.54 41.84 0.78 -6.55 16 26 C -0.08 -1.19 8.38 -38.95 -0.33 -1.51 16 27 H 0.07 1.15 6.50 -51.93 -0.34 0.81 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.46 7.30 -51.93 -0.38 1.08 16 34 H 0.04 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.06 1.58 5.86 -51.93 -0.30 1.28 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.42 5.01 8.28 -40.82 -0.34 4.67 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 2.68 6.12 -52.49 -0.32 2.36 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -31.29 354.12 -6.42 -37.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.87 Total: 3.66 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -3.07 Total: 9.25 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 1.06 Total: -52.27 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.14 Total: -20.16 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.29 -6.42 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527354327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.667 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds