Wall clock time and date at job start Tue Mar 31 2020 12:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 N 1.46503 * 109.46833 * 120.00371 * 2 1 3 5 5 C 1.46504 * 119.99518 * 304.58372 * 4 2 1 6 6 C 1.50700 * 109.47273 * 263.14293 * 5 4 2 7 7 H 1.08005 * 120.00016 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00174 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00303 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00024 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47084 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46598 * 120.00300 * 10 8 6 13 13 H 1.48504 * 109.47248 * 240.00464 * 10 8 6 14 14 C 1.34772 * 120.00342 * 124.58983 * 4 2 1 15 15 O 1.21361 * 119.99974 * 354.66651 * 14 4 2 16 16 C 1.49359 * 120.00258 * 174.67230 * 14 4 2 17 17 O 1.21372 * 119.99572 * 0.83806 * 16 14 4 18 18 N 1.34766 * 120.00005 * 180.83260 * 16 14 4 19 19 C 1.39754 * 120.00163 * 185.43539 * 18 16 14 20 20 C 1.39051 * 120.00797 * 209.44784 * 19 18 16 21 21 C 1.38196 * 120.23476 * 180.02562 * 20 19 18 22 22 C 1.38028 * 120.23048 * 359.70684 * 21 20 19 23 23 C 1.39645 * 119.99855 * 0.55285 * 22 21 20 24 24 C 1.43200 * 120.11311 * 179.74734 * 23 22 21 25 25 N 9.24274 * 99.14278 * 122.58566 * 2 1 3 26 26 C 1.38650 * 119.99958 * 29.47223 * 19 18 16 27 27 H 1.08994 * 109.46975 * 300.00148 * 1 2 3 28 28 H 1.08999 * 109.46605 * 59.99954 * 1 2 3 29 29 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47117 * 239.99477 * 2 1 3 31 31 H 1.08995 * 109.47187 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47412 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.47013 * 60.00309 * 3 2 1 34 34 H 1.08999 * 109.47229 * 23.14728 * 5 4 2 35 35 H 1.09004 * 109.46965 * 143.14829 * 5 4 2 36 36 H 0.96995 * 120.00574 * 179.97438 * 9 8 6 37 37 H 0.97000 * 120.00412 * 5.43721 * 18 16 14 38 38 H 1.08002 * 119.87974 * 0.03140 * 20 19 18 39 39 H 1.07998 * 119.88504 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99887 * 180.29430 * 22 21 20 41 41 H 1.07999 * 120.11488 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5834 -0.2514 2.5244 6 6 2.6236 0.6645 3.1162 7 1 3.5190 0.8965 2.5585 8 6 2.4319 1.2070 4.3691 9 7 1.3414 0.9250 5.0480 10 14 3.7216 2.3418 5.1029 11 1 4.8460 2.4978 4.1456 12 1 3.1154 3.6699 5.3745 13 1 4.2284 1.7601 6.3718 14 6 2.8676 -1.7301 1.0747 15 8 3.1523 -2.1558 -0.0256 16 6 3.4585 -2.3582 2.2942 17 8 3.1620 -1.9423 3.3952 18 7 4.3208 -3.3866 2.1720 19 6 4.7857 -4.0480 3.3120 20 6 6.0452 -4.6372 3.3091 21 6 6.5094 -5.2929 4.4336 22 6 5.7284 -5.3622 5.5695 23 6 4.4598 -4.7786 5.5814 24 6 3.6453 -4.8538 6.7568 25 7 2.9987 -4.9145 7.6889 26 6 3.9908 -4.1171 4.4459 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 0.6364 0.2815 2.4388 35 1 1.4545 -1.1200 3.1702 36 1 1.2067 1.3063 5.9296 37 1 4.6188 -3.6679 1.2928 38 1 6.6629 -4.5822 2.4248 39 1 7.4887 -5.7481 4.4252 40 1 6.0968 -5.8714 6.4478 41 1 3.0119 -3.6609 4.4501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527354327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:51 Heat of formation + Delta-G solvation = -14.554211 kcal Electronic energy + Delta-G solvation = -26251.747879 eV Core-core repulsion = 22517.968176 eV Total energy + Delta-G solvation = -3733.779703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11682 -40.65383 -39.27852 -37.85364 -37.53809 -35.74752 -34.79421 -32.90177 -32.27448 -30.89832 -29.18559 -28.06087 -26.34666 -25.06925 -24.95250 -23.59891 -21.73717 -20.61908 -19.98869 -18.77072 -18.42481 -18.09233 -17.26813 -17.05756 -16.77239 -16.57940 -16.24080 -15.80971 -15.25536 -15.15065 -15.04075 -14.75393 -14.59345 -14.30620 -14.23957 -13.95766 -13.83943 -13.58179 -13.43419 -13.30784 -12.97882 -12.82964 -12.77117 -12.61801 -12.48167 -12.35421 -12.23992 -11.89749 -11.65245 -11.51059 -11.44907 -10.60690 -10.17990 -9.90958 -9.60716 -9.17030 -8.12708 -6.18094 -0.24486 0.12988 0.70472 1.34847 1.36940 1.39462 1.46983 1.56949 1.87769 2.27651 2.40460 2.60575 2.85453 2.91747 3.22520 3.43919 3.96146 4.01383 4.13791 4.17748 4.23025 4.39110 4.43205 4.49142 4.63254 4.82133 4.83832 4.91313 4.98272 5.12654 5.17739 5.20020 5.29079 5.38048 5.39587 5.46745 5.48499 5.61122 5.78885 5.91373 6.12381 6.17817 6.35761 6.37783 6.81228 6.86833 7.11384 7.46707 8.95561 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.005180 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.336144 B = 5404.525325 C = 6817.055643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.147 4.147 4 N -0.560 5.560 5 C 0.249 3.751 6 C -0.496 4.496 7 H 0.046 0.954 8 C 0.020 3.980 9 N -0.924 5.924 10 Si 0.943 3.057 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.291 1.291 14 C 0.504 3.496 15 O -0.559 6.559 16 C 0.485 3.515 17 O -0.469 6.469 18 N -0.642 5.642 19 C 0.136 3.864 20 C -0.100 4.100 21 C -0.083 4.083 22 C -0.076 4.076 23 C -0.028 4.028 24 C 0.275 3.725 25 N -0.467 5.467 26 C -0.102 4.102 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.026 0.974 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.432 0.568 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.160 0.840 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 -11.001 -9.042 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.205 4.205 4 N -0.290 5.290 5 C 0.128 3.872 6 C -0.535 4.535 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.565 5.565 10 Si 0.769 3.231 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.218 1.218 14 C 0.287 3.713 15 O -0.441 6.441 16 C 0.267 3.733 17 O -0.339 6.339 18 N -0.291 5.291 19 C 0.042 3.958 20 C -0.121 4.121 21 C -0.101 4.101 22 C -0.097 4.097 23 C -0.032 4.032 24 C -0.039 4.039 25 N -0.143 5.143 26 C -0.125 4.125 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.187 0.813 39 H 0.202 0.798 40 H 0.178 0.822 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.995 -10.874 -7.254 15.867 hybrid contribution 0.280 0.928 0.284 1.010 sum 9.275 -9.946 -6.970 15.281 Atomic orbital electron populations 1.22084 0.93396 1.02234 1.03282 1.21348 0.95492 0.93697 0.87223 1.22021 1.00552 0.95082 1.02843 1.48370 1.41803 1.28698 1.10153 1.19392 0.94911 0.95622 0.77240 1.21312 1.04641 1.26426 1.01111 0.93542 1.25462 0.96965 0.98188 0.97251 1.70018 1.27633 1.45850 1.13000 0.85741 0.80041 0.79037 0.78245 1.19122 1.20239 1.21783 1.19911 0.80882 0.81879 0.88665 1.90630 1.62586 1.63774 1.27131 1.20472 0.81390 0.81197 0.90240 1.91013 1.56347 1.58847 1.27697 1.43051 1.44918 1.31133 1.09999 1.17740 0.94319 0.96810 0.86971 1.21559 0.91505 0.97409 1.01613 1.21365 1.01123 0.97436 0.90221 1.21511 0.90395 0.97105 1.00701 1.15908 0.94952 1.04926 0.87427 1.26104 0.92671 0.92237 0.92877 1.81216 1.09898 1.10432 1.12765 1.21116 1.00302 0.98250 0.92843 0.93183 0.88472 0.92794 0.88295 0.93938 0.89034 0.93039 0.95615 0.94621 0.93214 0.72847 0.81319 0.79807 0.82197 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.10 71.98 0.66 -3.80 16 2 C 0.12 4.18 3.25 44.99 0.15 4.33 16 3 C -0.15 -4.74 8.92 71.98 0.64 -4.10 16 4 N -0.56 -23.03 2.38 -803.79 -1.91 -24.94 16 5 C 0.25 12.28 4.11 85.63 0.35 12.63 16 6 C -0.50 -26.57 6.82 25.60 0.17 -26.40 16 7 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 8 C 0.02 1.12 5.46 84.65 0.46 1.58 16 9 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 10 Si 0.94 44.97 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 C 0.50 19.93 7.67 87.24 0.67 20.60 16 15 O -0.56 -21.20 15.83 -3.28 -0.05 -21.25 16 16 C 0.49 18.71 7.48 87.24 0.65 19.37 16 17 O -0.47 -22.00 9.54 -3.31 -0.03 -22.04 16 18 N -0.64 -18.12 5.33 -304.94 -1.63 -19.75 16 19 C 0.14 3.47 6.34 38.17 0.24 3.72 16 20 C -0.10 -1.54 9.94 22.46 0.22 -1.32 16 21 C -0.08 -0.97 10.02 22.21 0.22 -0.75 16 22 C -0.08 -1.25 9.75 22.56 0.22 -1.03 16 23 C -0.03 -0.74 5.73 -21.38 -0.12 -0.86 16 24 C 0.28 8.83 15.33 88.33 1.35 10.18 16 25 N -0.47 -17.23 18.54 19.00 0.35 -16.88 16 26 C -0.10 -3.17 8.38 22.68 0.19 -2.98 16 27 H 0.05 1.66 6.50 -2.39 -0.02 1.65 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 3.17 6.91 -2.39 -0.02 3.15 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.93 7.30 -2.39 -0.02 1.91 16 34 H 0.03 1.33 6.20 -2.39 -0.01 1.32 16 35 H 0.04 1.98 5.86 -2.38 -0.01 1.97 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.43 9.58 8.28 -92.71 -0.77 8.81 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.11 4.35 6.12 -2.91 -0.02 4.33 16 Total: -1.00 -73.15 354.12 5.44 -67.71 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.32 Total: 13.60 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 6.08 Total: 31.17 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -2.90 Total: -116.19 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.08 Total: -43.29 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.15 5.44 -67.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527354327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.154 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds