Wall clock time and date at job start Tue Mar 31 2020 10:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46866 * 2 1 4 4 C 1.52998 * 109.46933 * 119.99751 * 2 1 3 5 5 C 1.50690 * 109.47555 * 240.00123 * 2 1 3 6 6 C 1.35308 * 126.66297 * 59.70795 * 5 2 1 7 7 C 1.42295 * 103.91947 * 179.88177 * 6 5 2 8 8 C 1.48294 * 126.93733 * 180.17501 * 7 6 5 9 9 O 1.21497 * 120.00131 * 0.28225 * 8 7 6 10 10 N 1.34782 * 119.99667 * 180.27660 * 8 7 6 11 11 C 1.39377 * 119.99830 * 175.15090 * 10 8 7 12 12 C 1.38623 * 119.58030 * 184.97981 * 11 10 8 13 13 C 1.40801 * 118.79004 * 179.75878 * 12 11 10 14 14 C 1.41548 * 120.99257 * 180.27816 * 13 12 11 15 15 H 1.08000 * 119.99728 * 203.82214 * 14 13 12 16 16 C 1.40030 * 120.00070 * 23.82668 * 14 13 12 17 17 N 1.30744 * 120.00123 * 16.94242 * 16 14 13 18 18 Si 1.86800 * 119.99890 * 196.94249 * 16 14 13 19 19 H 1.48504 * 109.47284 * 60.00031 * 18 16 14 20 20 H 1.48506 * 109.46961 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47346 * 300.00234 * 18 16 14 22 22 C 1.41173 * 118.01269 * 0.49977 * 13 12 11 23 23 C 1.37590 * 119.01598 * 359.76118 * 22 13 12 24 24 N 1.32075 * 121.11634 * 359.97188 * 23 22 13 25 25 N 1.30997 * 106.11844 * 0.38734 * 7 6 5 26 26 O 1.20902 * 111.43455 * 359.75532 * 25 7 6 27 27 H 1.08992 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46813 * 60.00040 * 1 2 3 29 29 H 1.08995 * 109.47225 * 300.00226 * 1 2 3 30 30 H 1.09008 * 109.47067 * 59.99927 * 3 2 1 31 31 H 1.09006 * 109.47030 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47371 * 299.99618 * 3 2 1 33 33 H 1.08995 * 109.47235 * 60.00106 * 4 2 1 34 34 H 1.09003 * 109.46948 * 180.02562 * 4 2 1 35 35 H 1.09008 * 109.47387 * 300.00310 * 4 2 1 36 36 H 1.08001 * 128.04157 * 359.96456 * 6 5 2 37 37 H 0.96996 * 119.99908 * 355.15281 * 10 8 7 38 38 H 1.08001 * 120.60127 * 0.02562 * 12 11 10 39 39 H 0.97001 * 119.99836 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.49045 * 179.77532 * 22 13 12 41 41 H 1.08003 * 119.44045 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0325 -0.7103 -1.2304 6 6 1.7857 -0.3708 -2.5167 7 6 2.4871 -1.3528 -3.2706 8 6 2.5619 -1.4566 -4.7480 9 8 1.9876 -0.6429 -5.4439 10 7 3.2669 -2.4535 -5.3187 11 6 3.2549 -2.6114 -6.7034 12 6 3.8974 -3.6993 -7.2737 13 6 3.8704 -3.8454 -8.6738 14 6 4.5060 -4.9415 -9.3047 15 1 4.8176 -4.8646 -10.3359 16 6 4.7307 -6.1257 -8.5918 17 7 4.0806 -6.3531 -7.4805 18 14 5.9594 -7.3804 -9.2286 19 1 7.3035 -6.7554 -9.3189 20 1 6.0131 -8.5367 -8.2984 21 1 5.5388 -7.8462 -10.5744 22 6 3.1946 -2.8633 -9.4300 23 6 2.5906 -1.8150 -8.7747 24 7 2.6341 -1.7170 -7.4583 25 7 3.0497 -2.1494 -2.3959 26 8 2.8056 -1.8045 -1.2631 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 -1.7488 1.2493 34 1 3.1300 -0.7208 1.2495 35 1 1.6766 -0.2073 2.1393 36 1 1.1949 0.4546 -2.8855 37 1 3.7826 -3.0610 -4.7657 38 1 4.4057 -4.4240 -6.6549 39 1 4.2365 -7.1732 -6.9865 40 1 3.1522 -2.9339 -10.5068 41 1 2.0721 -1.0596 -9.3465 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532435708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:04 Heat of formation + Delta-G solvation = 52.455068 kcal Electronic energy + Delta-G solvation = -25156.546888 eV Core-core repulsion = 21425.672925 eV Total energy + Delta-G solvation = -3730.873963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.09085 -39.59085 -37.79679 -37.64541 -34.42963 -33.97870 -33.67463 -30.99478 -30.58175 -28.75172 -27.73235 -27.67320 -26.04224 -24.73999 -23.24619 -22.07842 -21.83081 -20.65606 -19.23146 -17.79307 -17.76549 -17.31644 -16.72791 -15.80373 -15.26143 -14.94568 -14.62262 -14.45082 -14.39755 -14.24822 -14.05979 -13.80946 -13.63344 -12.88023 -12.74861 -12.68454 -12.64465 -12.38425 -12.05869 -11.88271 -11.48478 -11.46917 -11.46659 -11.24113 -11.21093 -10.92683 -10.40029 -10.34376 -10.23810 -9.84908 -9.73436 -9.50837 -9.37942 -8.05250 -7.81801 -7.09683 -6.85127 -4.64387 1.17855 1.68097 2.67611 2.77812 2.81437 3.00086 3.02514 3.22131 3.30325 3.67895 3.82858 4.04221 4.26597 4.48317 4.50111 4.63750 4.77881 4.97409 5.17499 5.23219 5.27172 5.34038 5.39304 5.48472 5.50490 5.61080 5.63922 5.74529 5.85426 5.88656 5.92812 5.95549 6.51537 6.58904 6.76218 6.90398 7.06421 7.32044 7.39491 7.66435 7.85159 8.05321 8.13860 8.34559 8.62358 8.70352 8.75421 9.61979 10.03486 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.002812 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.643704 B = 9956.075530 C =10984.233826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.142 4.142 4 C -0.148 4.148 5 C -0.029 4.029 6 C -0.177 4.177 7 C -0.016 4.016 8 C 0.581 3.419 9 O -0.462 6.462 10 N -0.641 5.641 11 C 0.334 3.666 12 C -0.239 4.239 13 C 0.143 3.857 14 C -0.454 4.454 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.785 5.785 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.283 4.283 23 C 0.120 3.880 24 N -0.557 5.557 25 N -0.335 5.335 26 O 0.122 5.878 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.178 0.822 37 H 0.414 0.586 38 H 0.129 0.871 39 H 0.284 0.716 40 H 0.104 0.896 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 8.309 17.037 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.093 4.093 6 C -0.199 4.199 7 C -0.176 4.176 8 C 0.363 3.637 9 O -0.330 6.330 10 N -0.287 5.287 11 C 0.111 3.889 12 C -0.264 4.264 13 C 0.135 3.865 14 C -0.485 4.485 15 H 0.101 0.899 16 C -0.142 4.142 17 N -0.410 5.410 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.307 4.307 23 C -0.034 4.034 24 N -0.277 5.277 25 N -0.036 5.036 26 O 0.048 5.952 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.196 0.804 37 H 0.249 0.751 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.233 8.371 16.991 19.215 hybrid contribution 0.715 -1.168 -0.581 1.487 sum -2.518 7.203 16.410 18.098 Atomic orbital electron populations 1.21955 0.92054 1.02993 1.02968 1.19167 0.96088 0.94373 0.88785 1.21954 1.01832 0.93183 1.02965 1.21911 1.01959 1.00764 0.95850 1.24401 0.97042 0.90383 0.97447 1.22337 1.04446 1.02558 0.90577 1.23788 1.01301 0.95894 0.96596 1.16992 0.80701 0.82512 0.83485 1.90877 1.42420 1.38553 1.61127 1.43219 1.48056 1.31145 1.06292 1.18109 0.96320 0.92480 0.82034 1.21544 1.09245 0.99075 0.96547 1.17556 0.87232 0.90974 0.90728 1.19556 1.33616 0.96238 0.99100 0.89860 1.25986 0.94734 0.99286 0.94197 1.69769 1.32468 1.25008 1.13764 0.86290 0.81280 0.79068 0.79696 1.18661 1.20205 1.18815 1.21896 1.08561 1.00880 0.99346 1.21756 0.96408 0.95916 0.89305 1.67186 1.25040 1.29163 1.06298 1.74201 1.18861 1.20721 0.89851 1.84763 1.51095 1.35878 1.23511 0.91872 0.91678 0.91071 0.91076 0.91899 0.91685 0.91684 0.91705 0.91392 0.80429 0.75067 0.85366 0.90517 0.87824 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.36 37.16 0.31 -0.61 16 2 C 0.02 0.13 0.94 -155.66 -0.15 -0.02 16 3 C -0.14 -0.90 8.36 37.16 0.31 -0.59 16 4 C -0.15 -0.93 8.07 37.16 0.30 -0.63 16 5 C -0.03 -0.33 5.76 -35.36 -0.20 -0.53 16 6 C -0.18 -2.38 10.40 -39.07 -0.41 -2.78 16 7 C -0.02 -0.27 7.19 -82.53 -0.59 -0.87 16 8 C 0.58 12.20 7.81 -12.12 -0.09 12.11 16 9 O -0.46 -11.02 15.20 5.37 0.08 -10.94 16 10 N -0.64 -13.95 5.38 -12.22 -0.07 -14.01 16 11 C 0.33 8.45 7.41 -154.77 -1.15 7.30 16 12 C -0.24 -6.22 8.62 -38.47 -0.33 -6.55 16 13 C 0.14 3.81 5.60 -106.55 -0.60 3.22 16 14 C -0.45 -11.72 9.12 -37.65 -0.34 -12.07 16 15 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 16 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 17 N -0.79 -19.65 10.93 55.55 0.61 -19.04 16 18 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.28 -6.99 9.90 -38.70 -0.38 -7.37 16 23 C 0.12 2.92 11.15 -17.68 -0.20 2.72 16 24 N -0.56 -14.53 7.85 -12.54 -0.10 -14.63 16 25 N -0.34 -5.33 11.85 33.29 0.39 -4.94 16 26 O 0.12 1.62 10.65 17.24 0.18 1.80 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.02 -51.93 -0.42 0.02 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.41 8.03 8.46 -40.82 -0.35 7.68 16 38 H 0.13 3.34 6.20 -52.49 -0.33 3.01 16 39 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 40 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.13 2.62 8.06 -52.48 -0.42 2.19 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -31.26 354.75 -7.48 -38.73 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.28 Total: 9.56 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -3.61 Total: -4.88 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.84 Total: -52.62 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.27 Total: -9.14 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.26 -7.48 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532435708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.187 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds