Wall clock time and date at job start Tue Mar 31 2020 11:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46813 * 2 1 4 4 H 1.08997 * 109.47469 * 305.00227 * 3 2 1 5 5 C 1.50703 * 109.47257 * 184.99932 * 3 2 1 6 6 H 1.07993 * 120.00479 * 240.00201 * 5 3 2 7 7 C 1.37885 * 119.99701 * 59.99944 * 5 3 2 8 8 N 1.31513 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99894 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47021 * 90.00090 * 9 7 5 11 11 H 1.48502 * 109.47274 * 210.00243 * 9 7 5 12 12 H 1.48498 * 109.47279 * 329.99989 * 9 7 5 13 13 N 1.46499 * 109.47155 * 65.00239 * 3 2 1 14 14 C 1.34774 * 120.00173 * 274.99630 * 13 3 2 15 15 O 1.21282 * 119.99856 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00214 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47087 * 180.02562 * 16 14 13 18 18 N 1.31331 * 120.47475 * 270.02499 * 17 16 14 19 19 N 1.28082 * 123.49504 * 179.97438 * 18 17 16 20 20 C 1.31975 * 123.27201 * 359.97438 * 19 18 17 21 21 O 1.35522 * 120.60711 * 180.02562 * 20 19 18 22 22 C 1.41133 * 118.78379 * 0.02562 * 20 19 18 23 23 C 1.39952 * 122.76854 * 180.02562 * 22 20 19 24 24 C 1.36343 * 119.39872 * 179.97438 * 23 22 20 25 25 C 1.39325 * 121.07147 * 359.97406 * 24 23 22 26 26 C 1.36301 * 121.06741 * 0.02842 * 25 24 23 27 27 C 1.40099 * 119.38598 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47465 * 59.99973 * 1 2 3 29 29 H 1.08999 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47143 * 299.99312 * 1 2 3 31 31 H 1.09003 * 109.46921 * 240.00183 * 2 1 3 32 32 H 1.09001 * 109.47465 * 120.00026 * 2 1 3 33 33 H 0.96999 * 119.99927 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00249 * 94.99392 * 13 3 2 35 35 H 1.09000 * 109.46760 * 60.00320 * 16 14 13 36 36 H 1.09000 * 109.47176 * 300.00582 * 16 14 13 37 37 H 0.96705 * 113.99826 * 269.98386 * 21 20 19 38 38 H 1.07992 * 120.30176 * 359.95037 * 23 22 20 39 39 H 1.08003 * 119.46384 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.46516 * 179.74412 * 25 24 23 41 41 H 1.08000 * 120.30616 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5538 -0.3518 -0.7599 11 1 6.3835 0.9217 -2.8166 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6550 17 6 -1.3616 3.8851 2.5236 18 7 -1.5600 5.1063 2.0831 19 7 -2.7214 5.6292 1.9483 20 6 -3.8403 4.9923 2.2387 21 8 -5.0415 5.5980 2.0749 22 6 -3.7629 3.6689 2.7230 23 6 -4.8951 2.9168 3.0561 24 6 -4.7406 1.6432 3.5177 25 6 -3.4748 1.0794 3.6623 26 6 -2.3510 1.7836 3.3474 27 6 -2.4727 3.0951 2.8702 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0609 -2.9499 34 1 2.2719 2.1231 1.9978 35 1 0.7276 4.1529 2.8680 36 1 0.0673 2.6129 3.4686 37 1 -5.3491 6.0790 2.8554 38 1 -5.8823 3.3414 2.9488 39 1 -5.6137 1.0617 3.7746 40 1 -3.3823 0.0697 4.0342 41 1 -1.3758 1.3345 3.4646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545863937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:42 Heat of formation + Delta-G solvation = -6.689754 kcal Electronic energy + Delta-G solvation = -26049.827808 eV Core-core repulsion = 22316.389134 eV Total energy + Delta-G solvation = -3733.438675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64888 -39.11909 -38.26391 -37.77278 -35.18138 -33.64507 -32.40257 -31.76928 -31.15963 -30.60964 -28.57624 -26.76485 -24.69622 -24.31241 -23.06242 -22.10174 -20.38783 -19.39586 -19.29127 -18.69451 -17.82271 -17.24800 -16.28792 -15.98359 -15.40016 -15.15359 -15.05219 -14.96125 -14.49913 -14.20839 -14.05302 -13.61891 -13.06324 -12.77107 -12.69043 -12.59107 -12.43766 -12.28602 -11.84196 -11.69327 -11.35483 -11.28545 -11.09470 -10.97062 -10.82709 -10.39848 -10.31426 -10.18637 -9.66614 -9.54330 -9.41362 -9.12208 -9.04266 -8.52411 -8.48929 -7.86224 -6.12894 -4.22442 0.03386 0.46749 1.52319 2.71890 3.20603 3.23958 3.30748 3.32150 3.34079 3.60872 3.91426 4.18037 4.20972 4.36205 4.41962 4.48232 4.74717 4.83791 4.92421 5.11771 5.18674 5.25994 5.40001 5.47802 5.57593 5.65229 5.68790 6.00618 6.08657 6.12540 6.34955 6.40894 6.43264 6.62282 6.98789 7.12346 7.17228 7.33556 7.41754 7.59973 7.70844 7.88826 8.16395 8.61829 8.76218 8.81521 9.08780 9.44841 10.92440 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.003321 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.084751 B = 8428.640612 C = 9023.039672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.539 6.539 16 C -0.099 4.099 17 C 0.141 3.859 18 N -0.232 5.232 19 N -0.272 5.272 20 C 0.284 3.716 21 O -0.469 6.469 22 C -0.093 4.093 23 C -0.087 4.087 24 C -0.101 4.101 25 C -0.097 4.097 26 C -0.085 4.085 27 C -0.053 4.053 28 H 0.048 0.952 29 H 0.022 0.978 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.402 0.598 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 2.068 16.617 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.417 6.417 16 C -0.140 4.140 17 C -0.015 4.015 18 N -0.066 5.066 19 N -0.113 5.113 20 C 0.087 3.913 21 O -0.274 6.274 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.104 4.104 27 C -0.060 4.060 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.260 0.740 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.416 3.241 14.573 20.754 hybrid contribution 0.483 -1.169 1.048 1.642 sum -13.933 2.072 15.621 21.034 Atomic orbital electron populations 1.21834 0.98419 0.97920 1.01173 1.21935 0.92489 0.99824 1.02316 1.18801 0.94253 0.89103 0.80923 0.93283 1.21228 0.90649 1.39052 1.06356 0.92003 1.24889 0.98617 0.94826 0.95351 1.69893 1.35141 1.37558 1.09338 0.86455 0.84860 0.78422 0.77413 1.20572 1.21093 1.19816 1.46449 1.14252 1.55922 1.18724 1.19865 0.83244 0.79562 0.88254 1.90727 1.51442 1.59332 1.40217 1.20672 0.91887 1.02167 0.99316 1.22480 0.95343 0.91367 0.92331 1.72390 1.12924 1.11143 1.10100 1.72445 0.94046 1.30962 1.13840 1.20951 0.87167 0.88850 0.94324 1.84737 1.29862 1.70618 1.42143 1.18987 0.94553 0.95473 1.01141 1.20869 0.97690 0.94429 0.97740 1.21084 0.97880 0.95141 0.97968 1.21105 0.92174 1.00324 0.98065 1.21061 1.00162 0.92262 0.96949 1.18672 0.92231 0.95880 0.99235 0.93242 0.95912 0.94409 0.88280 0.94994 0.92558 0.77829 0.86429 0.87258 0.73967 0.84283 0.84962 0.84790 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -13.79 5.02 -54.93 -0.28 -14.07 16 14 C 0.51 9.61 6.39 -10.98 -0.07 9.54 16 15 O -0.54 -12.59 13.17 5.56 0.07 -12.52 16 16 C -0.10 -1.36 5.62 -29.04 -0.16 -1.52 16 17 C 0.14 2.23 5.44 -81.89 -0.45 1.78 16 18 N -0.23 -4.16 11.33 33.90 0.38 -3.77 16 19 N -0.27 -4.70 11.44 30.80 0.35 -4.35 16 20 C 0.28 4.03 7.93 -16.39 -0.13 3.90 16 21 O -0.47 -5.05 12.98 -18.26 -0.24 -5.29 16 22 C -0.09 -1.23 5.76 -106.73 -0.61 -1.84 16 23 C -0.09 -0.86 9.63 -39.62 -0.38 -1.24 16 24 C -0.10 -0.85 9.95 -39.86 -0.40 -1.25 16 25 C -0.10 -0.88 9.95 -39.87 -0.40 -1.28 16 26 C -0.08 -0.96 9.34 -39.58 -0.37 -1.33 16 27 C -0.05 -0.74 5.75 -106.86 -0.61 -1.36 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 6.37 8.54 -40.82 -0.35 6.02 16 35 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.11 1.07 6.59 -51.93 -0.34 0.73 16 37 H 0.40 1.94 9.06 45.56 0.41 2.35 16 38 H 0.14 1.01 7.76 -52.49 -0.41 0.61 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.40 6.58 -52.49 -0.35 1.06 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -35.24 344.19 -6.96 -42.20 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.09 Total: 7.49 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.96 Total: -6.35 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.09 Total: -46.14 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.16 Total: -17.80 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.24 -6.96 -42.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545863937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.512 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds