Wall clock time and date at job start Tue Mar 31 2020 11:54:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.46813 * 2 1
4 4 H 1.08997 * 109.47469 * 305.00227 * 3 2 1
5 5 C 1.50703 * 109.47257 * 184.99932 * 3 2 1
6 6 H 1.07993 * 120.00479 * 240.00201 * 5 3 2
7 7 C 1.37885 * 119.99701 * 59.99944 * 5 3 2
8 8 N 1.31513 * 119.99883 * 0.02562 * 7 5 3
9 9 Si 1.86794 * 119.99894 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47021 * 90.00090 * 9 7 5
11 11 H 1.48502 * 109.47274 * 210.00243 * 9 7 5
12 12 H 1.48498 * 109.47279 * 329.99989 * 9 7 5
13 13 N 1.46499 * 109.47155 * 65.00239 * 3 2 1
14 14 C 1.34774 * 120.00173 * 274.99630 * 13 3 2
15 15 O 1.21282 * 119.99856 * 0.02562 * 14 13 3
16 16 C 1.50703 * 120.00214 * 179.97438 * 14 13 3
17 17 C 1.50694 * 109.47087 * 180.02562 * 16 14 13
18 18 N 1.31331 * 120.47475 * 270.02499 * 17 16 14
19 19 N 1.28082 * 123.49504 * 179.97438 * 18 17 16
20 20 C 1.31975 * 123.27201 * 359.97438 * 19 18 17
21 21 O 1.35522 * 120.60711 * 180.02562 * 20 19 18
22 22 C 1.41133 * 118.78379 * 0.02562 * 20 19 18
23 23 C 1.39952 * 122.76854 * 180.02562 * 22 20 19
24 24 C 1.36343 * 119.39872 * 179.97438 * 23 22 20
25 25 C 1.39325 * 121.07147 * 359.97406 * 24 23 22
26 26 C 1.36301 * 121.06741 * 0.02842 * 25 24 23
27 27 C 1.40099 * 119.38598 * 359.97438 * 26 25 24
28 28 H 1.09001 * 109.47465 * 59.99973 * 1 2 3
29 29 H 1.08999 * 109.46882 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47143 * 299.99312 * 1 2 3
31 31 H 1.09003 * 109.46921 * 240.00183 * 2 1 3
32 32 H 1.09001 * 109.47465 * 120.00026 * 2 1 3
33 33 H 0.96999 * 119.99927 * 180.02562 * 8 7 5
34 34 H 0.97003 * 120.00249 * 94.99392 * 13 3 2
35 35 H 1.09000 * 109.46760 * 60.00320 * 16 14 13
36 36 H 1.09000 * 109.47176 * 300.00582 * 16 14 13
37 37 H 0.96705 * 113.99826 * 269.98386 * 21 20 19
38 38 H 1.07992 * 120.30176 * 359.95037 * 23 22 20
39 39 H 1.08003 * 119.46384 * 180.02562 * 24 23 22
40 40 H 1.07998 * 119.46516 * 179.74412 * 25 24 23
41 41 H 1.08000 * 120.30616 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9816 -0.8417
5 6 3.5419 1.4444 -0.1238
6 1 4.1471 1.8890 0.6522
7 6 4.1433 0.8785 -1.2280
8 7 3.4061 0.3375 -2.1733
9 14 6.0049 0.8802 -1.3812
10 1 6.5538 -0.3518 -0.7599
11 1 6.3835 0.9217 -2.8166
12 1 6.5575 2.0721 -0.6890
13 7 1.6524 2.0974 1.2518
14 6 0.4351 2.6644 1.3670
15 8 -0.3397 2.6319 0.4345
16 6 0.0362 3.3376 2.6550
17 6 -1.3616 3.8851 2.5236
18 7 -1.5600 5.1063 2.0831
19 7 -2.7214 5.6292 1.9483
20 6 -3.8403 4.9923 2.2387
21 8 -5.0415 5.5980 2.0749
22 6 -3.7629 3.6689 2.7230
23 6 -4.8951 2.9168 3.0561
24 6 -4.7406 1.6432 3.5177
25 6 -3.4748 1.0794 3.6623
26 6 -2.3510 1.7836 3.3474
27 6 -2.4727 3.0951 2.8702
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8901
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 3.8292 -0.0609 -2.9499
34 1 2.2719 2.1231 1.9978
35 1 0.7276 4.1529 2.8680
36 1 0.0673 2.6129 3.4686
37 1 -5.3491 6.0790 2.8554
38 1 -5.8823 3.3414 2.9488
39 1 -5.6137 1.0617 3.7746
40 1 -3.3823 0.0697 4.0342
41 1 -1.3758 1.3345 3.4646
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000545863937.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:54:41
Heat of formation + Delta-G solvation = -35.480267 kcal
Electronic energy + Delta-G solvation = -26051.076259 eV
Core-core repulsion = 22316.389134 eV
Total energy + Delta-G solvation = -3734.687125 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.62612 -40.66331 -39.10838 -38.75343 -36.97020 -34.76161 -34.27100 -32.84044
-32.60665 -31.59087 -29.91457 -28.53879 -25.67035 -25.31844 -24.81456 -23.15194
-21.97075 -21.10900 -20.25585 -19.62978 -18.95768 -18.64339 -17.55335 -17.39740
-17.01277 -16.45224 -16.33502 -15.99706 -15.75583 -15.32362 -15.04894 -14.86882
-14.56531 -14.46160 -14.07449 -13.61087 -13.53537 -13.28076 -13.15779 -13.11458
-12.92944 -12.84007 -12.64232 -12.58451 -12.16299 -12.12219 -11.94424 -11.56188
-11.35666 -11.02930 -10.69542 -10.50011 -10.44299 -10.36388 -9.61844 -9.43976
-8.14627 -6.31784 -0.86375 -0.43157 0.66136 1.45340 1.46915 1.56761
1.79654 1.84293 2.27920 2.37690 2.57302 2.88083 3.03704 3.15382
3.27836 3.53788 3.70380 3.83082 4.08005 4.16202 4.20155 4.25701
4.38174 4.51049 4.54690 4.59730 4.75202 4.79253 4.80391 4.90088
5.08072 5.15031 5.28003 5.31143 5.34789 5.46336 5.58883 5.64398
5.73631 5.82498 5.95702 6.19691 6.45086 6.77162 6.99457 7.35640
7.60833 7.74148 8.90579
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.022501 B = 0.003321 C = 0.003102
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.084751 B = 8428.640612 C = 9023.039672
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.119 4.119
3 C 0.279 3.721
4 H -0.010 1.010
5 C -0.546 4.546
6 H 0.074 0.926
7 C 0.014 3.986
8 N -0.916 5.916
9 Si 0.969 3.031
10 H -0.269 1.269
11 H -0.290 1.290
12 H -0.265 1.265
13 N -0.700 5.700
14 C 0.507 3.493
15 O -0.587 6.587
16 C -0.085 4.085
17 C 0.126 3.874
18 N -0.274 5.274
19 N -0.323 5.323
20 C 0.292 3.708
21 O -0.470 6.470
22 C -0.116 4.116
23 C -0.088 4.088
24 C -0.091 4.091
25 C -0.085 4.085
26 C -0.104 4.104
27 C -0.074 4.074
28 H 0.014 0.986
29 H 0.046 0.954
30 H 0.050 0.950
31 H 0.068 0.932
32 H 0.048 0.952
33 H 0.263 0.737
34 H 0.408 0.592
35 H 0.134 0.866
36 H 0.155 0.845
37 H 0.427 0.573
38 H 0.164 0.836
39 H 0.173 0.827
40 H 0.169 0.831
41 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.361 0.381 19.555 24.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.158 4.158
3 C 0.175 3.825
4 H 0.008 0.992
5 C -0.585 4.585
6 H 0.092 0.908
7 C -0.186 4.186
8 N -0.555 5.555
9 Si 0.794 3.206
10 H -0.194 1.194
11 H -0.216 1.216
12 H -0.189 1.189
13 N -0.349 5.349
14 C 0.293 3.707
15 O -0.468 6.468
16 C -0.126 4.126
17 C -0.032 4.032
18 N -0.107 5.107
19 N -0.163 5.163
20 C 0.095 3.905
21 O -0.279 6.279
22 C -0.124 4.124
23 C -0.108 4.108
24 C -0.110 4.110
25 C -0.104 4.104
26 C -0.123 4.123
27 C -0.081 4.081
28 H 0.033 0.967
29 H 0.065 0.935
30 H 0.069 0.931
31 H 0.086 0.914
32 H 0.067 0.933
33 H 0.073 0.927
34 H 0.243 0.757
35 H 0.152 0.848
36 H 0.173 0.827
37 H 0.290 0.710
38 H 0.181 0.819
39 H 0.190 0.810
40 H 0.186 0.814
41 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -15.249 1.593 17.578 23.325
hybrid contribution 0.539 -0.684 0.165 0.886
sum -14.710 0.909 17.743 23.066
Atomic orbital electron populations
1.21662 0.97018 0.99042 1.00124 1.21755 0.93635 0.98882 1.01487
1.18347 0.93551 0.89287 0.81294 0.99176 1.21611 0.91470 1.38680
1.06704 0.90756 1.25773 1.03225 0.94508 0.95061 1.70061 1.37021
1.38508 1.09891 0.85389 0.79271 0.78948 0.76994 1.19412 1.21649
1.18924 1.46159 1.15197 1.55871 1.17694 1.20649 0.82100 0.78484
0.89439 1.90713 1.52753 1.60867 1.42475 1.20656 0.91509 1.03178
0.97232 1.22720 0.96578 0.91276 0.92661 1.72216 1.13840 1.12816
1.11839 1.72260 0.94882 1.32499 1.16670 1.21107 0.87232 0.89501
0.92703 1.84674 1.28326 1.70938 1.43987 1.19246 0.95652 0.95396
1.02125 1.21228 0.97598 0.94896 0.97087 1.21602 0.99110 0.94580
0.95732 1.21607 0.91640 1.01421 0.95743 1.21300 1.01829 0.91420
0.97789 1.18905 0.92095 0.97021 1.00076 0.96660 0.93485 0.93079
0.91395 0.93288 0.92736 0.75650 0.84792 0.82713 0.71017 0.81870
0.80968 0.81387 0.83039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.29 8.51 71.98 0.61 -4.68 16
2 C -0.12 -5.66 5.45 30.59 0.17 -5.50 16
3 C 0.28 14.06 2.24 44.25 0.10 14.16 16
4 H -0.01 -0.60 7.58 -2.39 -0.02 -0.62 16
5 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16
6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16
7 C 0.01 0.76 5.29 84.66 0.45 1.21 16
8 N -0.92 -52.65 11.29 21.45 0.24 -52.41 16
9 Si 0.97 41.95 29.54 68.60 2.03 43.98 16
10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16
12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16
13 N -0.70 -27.24 5.02 -446.10 -2.24 -29.48 16
14 C 0.51 19.29 6.39 87.66 0.56 19.85 16
15 O -0.59 -28.47 13.17 -3.04 -0.04 -28.51 16
16 C -0.08 -2.25 5.62 29.10 0.16 -2.09 16
17 C 0.13 3.99 5.44 43.22 0.23 4.23 16
18 N -0.27 -10.31 11.33 -46.66 -0.53 -10.84 16
19 N -0.32 -11.70 11.44 -169.56 -1.94 -13.64 16
20 C 0.29 8.38 7.93 85.38 0.68 9.06 16
21 O -0.47 -9.85 12.98 -88.25 -1.15 -11.00 16
22 C -0.12 -2.96 5.76 -21.23 -0.12 -3.08 16
23 C -0.09 -1.47 9.63 22.24 0.21 -1.25 16
24 C -0.09 -1.11 9.95 22.09 0.22 -0.89 16
25 C -0.09 -1.18 9.95 22.08 0.22 -0.96 16
26 C -0.10 -2.08 9.34 22.27 0.21 -1.87 16
27 C -0.07 -2.02 5.75 -21.31 -0.12 -2.14 16
28 H 0.01 0.72 7.85 -2.39 -0.02 0.71 16
29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
30 H 0.05 2.06 5.65 -2.39 -0.01 2.05 16
31 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16
32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16
34 H 0.41 12.74 8.54 -92.71 -0.79 11.95 16
35 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16
36 H 0.16 2.60 6.59 -2.39 -0.02 2.58 16
37 H 0.43 3.64 9.06 -74.05 -0.67 2.97 16
38 H 0.16 1.81 7.76 -2.91 -0.02 1.78 16
39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16
40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16
41 H 0.15 2.55 6.58 -2.91 -0.02 2.53 16
Total: -1.00 -82.97 344.19 -0.18 -83.15
By element:
Atomic # 1 Polarization: 21.33 SS G_CDS: -0.36 Total: 20.97 kcal
Atomic # 6 Polarization: -6.02 SS G_CDS: 3.80 Total: -2.22 kcal
Atomic # 7 Polarization: -101.90 SS G_CDS: -4.47 Total: -106.37 kcal
Atomic # 8 Polarization: -38.33 SS G_CDS: -1.19 Total: -39.51 kcal
Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal
Total: -82.97 -0.18 -83.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000545863937.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.673 kcal
(2) G-P(sol) polarization free energy of solvation -82.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.297 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.153 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds