Wall clock time and date at job start Tue Mar 31 2020 11:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46813 * 2 1 4 4 H 1.08997 * 109.47469 * 305.00227 * 3 2 1 5 5 C 1.50703 * 109.47257 * 184.99932 * 3 2 1 6 6 H 1.07993 * 120.00479 * 240.00201 * 5 3 2 7 7 C 1.37885 * 119.99701 * 59.99944 * 5 3 2 8 8 N 1.31513 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99894 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47021 * 90.00090 * 9 7 5 11 11 H 1.48502 * 109.47274 * 210.00243 * 9 7 5 12 12 H 1.48498 * 109.47279 * 329.99989 * 9 7 5 13 13 N 1.46499 * 109.47155 * 65.00239 * 3 2 1 14 14 C 1.34774 * 120.00173 * 274.99630 * 13 3 2 15 15 O 1.21282 * 119.99856 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00214 * 179.97438 * 14 13 3 17 17 C 1.50694 * 109.47087 * 180.02562 * 16 14 13 18 18 N 1.31331 * 120.47475 * 270.02499 * 17 16 14 19 19 N 1.28082 * 123.49504 * 179.97438 * 18 17 16 20 20 C 1.31975 * 123.27201 * 359.97438 * 19 18 17 21 21 O 1.35522 * 120.60711 * 180.02562 * 20 19 18 22 22 C 1.41133 * 118.78379 * 0.02562 * 20 19 18 23 23 C 1.39952 * 122.76854 * 180.02562 * 22 20 19 24 24 C 1.36343 * 119.39872 * 179.97438 * 23 22 20 25 25 C 1.39325 * 121.07147 * 359.97406 * 24 23 22 26 26 C 1.36301 * 121.06741 * 0.02842 * 25 24 23 27 27 C 1.40099 * 119.38598 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47465 * 59.99973 * 1 2 3 29 29 H 1.08999 * 109.46882 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47143 * 299.99312 * 1 2 3 31 31 H 1.09003 * 109.46921 * 240.00183 * 2 1 3 32 32 H 1.09001 * 109.47465 * 120.00026 * 2 1 3 33 33 H 0.96999 * 119.99927 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00249 * 94.99392 * 13 3 2 35 35 H 1.09000 * 109.46760 * 60.00320 * 16 14 13 36 36 H 1.09000 * 109.47176 * 300.00582 * 16 14 13 37 37 H 0.96705 * 113.99826 * 269.98386 * 21 20 19 38 38 H 1.07992 * 120.30176 * 359.95037 * 23 22 20 39 39 H 1.08003 * 119.46384 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.46516 * 179.74412 * 25 24 23 41 41 H 1.08000 * 120.30616 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3812 10 1 6.5538 -0.3518 -0.7599 11 1 6.3835 0.9217 -2.8166 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6550 17 6 -1.3616 3.8851 2.5236 18 7 -1.5600 5.1063 2.0831 19 7 -2.7214 5.6292 1.9483 20 6 -3.8403 4.9923 2.2387 21 8 -5.0415 5.5980 2.0749 22 6 -3.7629 3.6689 2.7230 23 6 -4.8951 2.9168 3.0561 24 6 -4.7406 1.6432 3.5177 25 6 -3.4748 1.0794 3.6623 26 6 -2.3510 1.7836 3.3474 27 6 -2.4727 3.0951 2.8702 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0609 -2.9499 34 1 2.2719 2.1231 1.9978 35 1 0.7276 4.1529 2.8680 36 1 0.0673 2.6129 3.4686 37 1 -5.3491 6.0790 2.8554 38 1 -5.8823 3.3414 2.9488 39 1 -5.6137 1.0617 3.7746 40 1 -3.3823 0.0697 4.0342 41 1 -1.3758 1.3345 3.4646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545863937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:41 Heat of formation + Delta-G solvation = -35.480267 kcal Electronic energy + Delta-G solvation = -26051.076259 eV Core-core repulsion = 22316.389134 eV Total energy + Delta-G solvation = -3734.687125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62612 -40.66331 -39.10838 -38.75343 -36.97020 -34.76161 -34.27100 -32.84044 -32.60665 -31.59087 -29.91457 -28.53879 -25.67035 -25.31844 -24.81456 -23.15194 -21.97075 -21.10900 -20.25585 -19.62978 -18.95768 -18.64339 -17.55335 -17.39740 -17.01277 -16.45224 -16.33502 -15.99706 -15.75583 -15.32362 -15.04894 -14.86882 -14.56531 -14.46160 -14.07449 -13.61087 -13.53537 -13.28076 -13.15779 -13.11458 -12.92944 -12.84007 -12.64232 -12.58451 -12.16299 -12.12219 -11.94424 -11.56188 -11.35666 -11.02930 -10.69542 -10.50011 -10.44299 -10.36388 -9.61844 -9.43976 -8.14627 -6.31784 -0.86375 -0.43157 0.66136 1.45340 1.46915 1.56761 1.79654 1.84293 2.27920 2.37690 2.57302 2.88083 3.03704 3.15382 3.27836 3.53788 3.70380 3.83082 4.08005 4.16202 4.20155 4.25701 4.38174 4.51049 4.54690 4.59730 4.75202 4.79253 4.80391 4.90088 5.08072 5.15031 5.28003 5.31143 5.34789 5.46336 5.58883 5.64398 5.73631 5.82498 5.95702 6.19691 6.45086 6.77162 6.99457 7.35640 7.60833 7.74148 8.90579 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.003321 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.084751 B = 8428.640612 C = 9023.039672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.010 1.010 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.587 6.587 16 C -0.085 4.085 17 C 0.126 3.874 18 N -0.274 5.274 19 N -0.323 5.323 20 C 0.292 3.708 21 O -0.470 6.470 22 C -0.116 4.116 23 C -0.088 4.088 24 C -0.091 4.091 25 C -0.085 4.085 26 C -0.104 4.104 27 C -0.074 4.074 28 H 0.014 0.986 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.263 0.737 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.427 0.573 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.361 0.381 19.555 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.008 0.992 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.349 5.349 14 C 0.293 3.707 15 O -0.468 6.468 16 C -0.126 4.126 17 C -0.032 4.032 18 N -0.107 5.107 19 N -0.163 5.163 20 C 0.095 3.905 21 O -0.279 6.279 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.110 4.110 25 C -0.104 4.104 26 C -0.123 4.123 27 C -0.081 4.081 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.290 0.710 38 H 0.181 0.819 39 H 0.190 0.810 40 H 0.186 0.814 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.249 1.593 17.578 23.325 hybrid contribution 0.539 -0.684 0.165 0.886 sum -14.710 0.909 17.743 23.066 Atomic orbital electron populations 1.21662 0.97018 0.99042 1.00124 1.21755 0.93635 0.98882 1.01487 1.18347 0.93551 0.89287 0.81294 0.99176 1.21611 0.91470 1.38680 1.06704 0.90756 1.25773 1.03225 0.94508 0.95061 1.70061 1.37021 1.38508 1.09891 0.85389 0.79271 0.78948 0.76994 1.19412 1.21649 1.18924 1.46159 1.15197 1.55871 1.17694 1.20649 0.82100 0.78484 0.89439 1.90713 1.52753 1.60867 1.42475 1.20656 0.91509 1.03178 0.97232 1.22720 0.96578 0.91276 0.92661 1.72216 1.13840 1.12816 1.11839 1.72260 0.94882 1.32499 1.16670 1.21107 0.87232 0.89501 0.92703 1.84674 1.28326 1.70938 1.43987 1.19246 0.95652 0.95396 1.02125 1.21228 0.97598 0.94896 0.97087 1.21602 0.99110 0.94580 0.95732 1.21607 0.91640 1.01421 0.95743 1.21300 1.01829 0.91420 0.97789 1.18905 0.92095 0.97021 1.00076 0.96660 0.93485 0.93079 0.91395 0.93288 0.92736 0.75650 0.84792 0.82713 0.71017 0.81870 0.80968 0.81387 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.51 71.98 0.61 -4.68 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.50 16 3 C 0.28 14.06 2.24 44.25 0.10 14.16 16 4 H -0.01 -0.60 7.58 -2.39 -0.02 -0.62 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.65 11.29 21.45 0.24 -52.41 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 13 N -0.70 -27.24 5.02 -446.10 -2.24 -29.48 16 14 C 0.51 19.29 6.39 87.66 0.56 19.85 16 15 O -0.59 -28.47 13.17 -3.04 -0.04 -28.51 16 16 C -0.08 -2.25 5.62 29.10 0.16 -2.09 16 17 C 0.13 3.99 5.44 43.22 0.23 4.23 16 18 N -0.27 -10.31 11.33 -46.66 -0.53 -10.84 16 19 N -0.32 -11.70 11.44 -169.56 -1.94 -13.64 16 20 C 0.29 8.38 7.93 85.38 0.68 9.06 16 21 O -0.47 -9.85 12.98 -88.25 -1.15 -11.00 16 22 C -0.12 -2.96 5.76 -21.23 -0.12 -3.08 16 23 C -0.09 -1.47 9.63 22.24 0.21 -1.25 16 24 C -0.09 -1.11 9.95 22.09 0.22 -0.89 16 25 C -0.09 -1.18 9.95 22.08 0.22 -0.96 16 26 C -0.10 -2.08 9.34 22.27 0.21 -1.87 16 27 C -0.07 -2.02 5.75 -21.31 -0.12 -2.14 16 28 H 0.01 0.72 7.85 -2.39 -0.02 0.71 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 2.06 5.65 -2.39 -0.01 2.05 16 31 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.41 12.74 8.54 -92.71 -0.79 11.95 16 35 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.16 2.60 6.59 -2.39 -0.02 2.58 16 37 H 0.43 3.64 9.06 -74.05 -0.67 2.97 16 38 H 0.16 1.81 7.76 -2.91 -0.02 1.78 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.15 2.55 6.58 -2.91 -0.02 2.53 16 Total: -1.00 -82.97 344.19 -0.18 -83.15 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.36 Total: 20.97 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 3.80 Total: -2.22 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.47 Total: -106.37 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.19 Total: -39.51 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -82.97 -0.18 -83.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545863937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.673 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds