Wall clock time and date at job start Tue Mar 31 2020 10:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34951 * 126.03524 * 2 1 4 4 C 1.35314 * 107.74088 * 180.14350 * 3 2 1 5 5 C 1.50700 * 126.03616 * 179.87407 * 4 3 2 6 6 C 1.53007 * 109.47026 * 299.71201 * 5 4 3 7 7 C 1.52991 * 109.47517 * 59.71721 * 5 4 3 8 8 N 1.46503 * 109.47196 * 179.71991 * 5 4 3 9 9 S 1.65601 * 120.00275 * 187.44688 * 8 5 4 10 10 O 1.42095 * 104.27878 * 185.19112 * 9 8 5 11 11 O 1.42100 * 104.27223 * 313.05307 * 9 8 5 12 12 C 1.81402 * 104.44813 * 69.12121 * 9 8 5 13 13 C 1.52997 * 109.47133 * 171.07414 * 12 9 8 14 14 C 1.53000 * 109.47492 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47506 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00163 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00292 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99657 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47328 * 59.99948 * 19 17 15 21 21 H 1.48498 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47062 * 299.99564 * 19 17 15 23 23 C 1.39873 * 107.92343 * 359.61099 * 4 3 2 24 24 N 1.30838 * 108.20010 * 0.24332 * 23 4 3 25 25 H 1.08990 * 109.47258 * 270.31161 * 1 2 3 26 26 H 1.08999 * 109.46842 * 30.31644 * 1 2 3 27 27 H 1.09004 * 109.46880 * 150.31184 * 1 2 3 28 28 H 1.07998 * 126.12668 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47583 * 292.30696 * 6 5 4 30 30 H 1.09003 * 109.46584 * 172.30522 * 6 5 4 31 31 H 1.09000 * 109.46892 * 52.31004 * 6 5 4 32 32 H 1.09006 * 109.46674 * 314.18771 * 7 5 4 33 33 H 1.08995 * 109.47331 * 74.18352 * 7 5 4 34 34 H 1.08997 * 109.47841 * 194.19202 * 7 5 4 35 35 H 0.96997 * 119.99938 * 7.44030 * 8 5 4 36 36 H 1.08998 * 109.47439 * 291.07462 * 12 9 8 37 37 H 1.09002 * 109.46849 * 51.07506 * 12 9 8 38 38 H 1.09002 * 109.47401 * 300.00588 * 13 12 9 39 39 H 1.09002 * 109.47178 * 60.00293 * 13 12 9 40 40 H 1.08995 * 109.47116 * 300.00965 * 14 13 12 41 41 H 1.09009 * 109.46614 * 60.00427 * 14 13 12 42 42 H 0.97006 * 119.99890 * 179.97438 * 18 17 15 43 43 H 1.08000 * 125.89754 * 180.25981 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0032 5 6 4.7680 1.5453 -0.0071 6 6 4.7620 2.4228 -1.2605 7 6 4.7616 2.4344 1.2379 8 7 5.9701 0.7080 -0.0031 9 16 7.4623 1.4024 0.1798 10 8 8.3733 0.3249 0.0118 11 8 7.4510 2.4998 -0.7228 12 6 7.4809 1.9899 1.8960 13 6 8.8918 2.4564 2.2601 14 6 8.9074 2.9525 3.7073 15 6 10.2969 3.4127 4.0657 16 1 11.0898 3.3565 3.3346 17 6 10.5563 3.9044 5.3274 18 7 9.5911 3.9714 6.2183 19 14 12.2785 4.4754 5.7715 20 1 12.6826 5.5806 4.8657 21 1 12.2939 4.9557 7.1766 22 1 13.2284 3.3433 5.6254 23 6 3.5347 -0.7321 0.0038 24 7 2.2891 -1.1328 0.0057 25 1 -0.3633 0.0056 1.0275 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3633 -0.8928 -0.5090 28 1 1.9281 2.1194 -0.0004 29 1 4.9041 1.7980 -2.1422 30 1 5.5700 3.1516 -1.1976 31 1 3.8075 2.9440 -1.3346 32 1 3.7697 2.8664 1.3707 33 1 5.0176 1.8366 2.1126 34 1 5.4928 3.2337 1.1175 35 1 5.8920 -0.2532 -0.1075 36 1 6.7843 2.8214 2.0030 37 1 7.1835 1.1789 2.5608 38 1 9.5884 1.6249 2.1530 39 1 9.1892 3.2674 1.5952 40 1 8.2108 3.7841 3.8139 41 1 8.6098 2.1418 4.3725 42 1 9.7737 4.3171 7.1061 43 1 4.4054 -1.3710 0.0073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547410407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:19 Heat of formation + Delta-G solvation = 1.866781 kcal Electronic energy + Delta-G solvation = -24649.571543 eV Core-core repulsion = 21051.947859 eV Total energy + Delta-G solvation = -3597.623684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62609 -37.78798 -36.63992 -35.66647 -34.68191 -33.32996 -32.21829 -31.35609 -29.34282 -28.20918 -27.08480 -26.97344 -23.69315 -22.62707 -21.37089 -20.55146 -19.81088 -18.95382 -18.12535 -16.91545 -16.56127 -16.06214 -15.77420 -15.64127 -14.91965 -14.69152 -14.48102 -14.24377 -14.12876 -13.81327 -13.32884 -13.07632 -12.99375 -12.78385 -12.66142 -12.41302 -12.11422 -11.95381 -11.82700 -11.68309 -11.54463 -11.47675 -11.19295 -11.15266 -10.87113 -10.78779 -10.50378 -10.39718 -9.89465 -9.78464 -9.71226 -9.30938 -9.06826 -8.62922 -8.38664 -6.03984 -4.06808 0.54749 1.58183 2.20578 2.50044 2.89633 3.33347 3.37108 3.40440 3.98513 4.15134 4.43453 4.45520 4.51165 4.56166 4.74484 4.81810 4.83299 4.99943 5.00406 5.12665 5.25085 5.31271 5.32552 5.40320 5.46952 5.59763 5.72149 5.85022 5.95707 6.03512 6.21036 6.28071 6.31412 6.41903 6.51026 6.67858 6.90759 6.99182 7.39550 7.59340 7.69913 7.94316 8.35247 8.99352 9.57730 11.07189 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.002944 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752104 B = 9507.406298 C =10153.368748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.065 3.935 4 C -0.226 4.226 5 C 0.262 3.738 6 C -0.172 4.172 7 C -0.192 4.192 8 N -1.115 6.115 9 S 2.601 3.399 10 O -0.965 6.965 11 O -0.959 6.959 12 C -0.622 4.622 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.056 3.944 24 N -0.294 5.294 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.176 0.824 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.127 -5.678 -13.256 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.082 4.082 4 C -0.239 4.239 5 C 0.172 3.828 6 C -0.231 4.231 7 C -0.250 4.250 8 N -0.873 5.873 9 S 2.697 3.303 10 O -0.955 6.955 11 O -0.949 6.949 12 C -0.753 4.753 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.130 4.130 24 N -0.116 5.116 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.193 0.807 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.467 -6.404 -13.759 25.480 hybrid contribution 0.913 0.620 1.033 1.512 sum -19.554 -5.784 -12.726 24.037 Atomic orbital electron populations 1.21866 0.74109 1.04511 1.03479 1.48469 1.06674 1.03793 1.56908 1.22177 0.90435 0.93483 1.02083 1.19936 0.93737 0.93769 1.16493 1.18211 0.81005 0.88094 0.95485 1.22628 1.03411 1.00377 0.96669 1.22956 1.04326 1.00001 0.97747 1.55870 1.22578 1.18168 1.90681 1.05264 0.72261 0.74516 0.78257 1.93572 1.61471 1.54031 1.86432 1.93535 1.85375 1.55464 1.60546 1.31057 1.09080 1.12622 1.22548 1.21496 0.89188 1.00672 1.03137 1.19047 0.97353 0.96387 0.87890 1.21229 0.95353 1.42084 0.97776 0.92442 1.25014 0.97154 0.95738 0.96454 1.69948 1.32048 1.46404 1.05083 0.86624 0.84650 0.79210 0.77356 1.20121 1.21281 1.20129 1.23655 0.95185 0.94409 0.99739 1.77386 1.01544 1.08183 1.24458 0.90653 0.89417 0.89290 0.80695 0.92000 0.88709 0.92140 0.90290 0.90337 0.90715 0.75349 0.84436 0.85306 0.91509 0.91865 0.96154 0.96161 0.92878 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.25 4.01 -68.16 -0.27 -3.52 16 3 C 0.06 0.52 10.40 -17.22 -0.18 0.34 16 4 C -0.23 -2.17 4.80 -105.05 -0.50 -2.68 16 5 C 0.26 2.65 1.03 -132.97 -0.14 2.51 16 6 C -0.17 -1.79 8.04 37.16 0.30 -1.49 16 7 C -0.19 -1.86 6.77 37.15 0.25 -1.61 16 8 N -1.12 -12.40 5.42 -0.40 0.00 -12.40 16 9 S 2.60 38.01 5.15 -107.50 -0.55 37.46 16 10 O -0.96 -17.20 18.08 -57.54 -1.04 -18.24 16 11 O -0.96 -15.84 14.97 -57.54 -0.86 -16.70 16 12 C -0.62 -9.47 4.47 37.16 0.17 -9.30 16 13 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 14 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 15 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.06 0.58 11.14 -17.36 -0.19 0.39 16 24 N -0.29 -3.29 12.58 30.63 0.39 -2.91 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.15 5.74 -51.93 -0.30 0.85 16 31 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 32 H 0.08 0.60 7.60 -51.93 -0.39 0.20 16 33 H 0.08 0.77 7.05 -51.93 -0.37 0.40 16 34 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 35 H 0.41 3.89 6.60 -34.47 -0.23 3.66 16 36 H 0.14 1.87 4.89 -51.93 -0.25 1.62 16 37 H 0.13 1.76 8.10 -51.92 -0.42 1.34 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.18 1.48 6.73 -52.49 -0.35 1.12 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -36.84 356.85 -7.92 -44.77 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.37 Total: 1.26 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -0.30 Total: -25.87 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.85 Total: -44.64 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.90 Total: -34.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.01 SS G_CDS: -0.55 Total: 37.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.84 -7.92 -44.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547410407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.632 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds