Wall clock time and date at job start Tue Mar 31 2020 10:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34951 * 126.03524 * 2 1 4 4 C 1.35314 * 107.74088 * 180.14350 * 3 2 1 5 5 C 1.50700 * 126.03616 * 179.87407 * 4 3 2 6 6 C 1.53007 * 109.47026 * 299.71201 * 5 4 3 7 7 C 1.52991 * 109.47517 * 59.71721 * 5 4 3 8 8 N 1.46503 * 109.47196 * 179.71991 * 5 4 3 9 9 S 1.65601 * 120.00275 * 187.44688 * 8 5 4 10 10 O 1.42095 * 104.27878 * 185.19112 * 9 8 5 11 11 O 1.42100 * 104.27223 * 313.05307 * 9 8 5 12 12 C 1.81402 * 104.44813 * 69.12121 * 9 8 5 13 13 C 1.52997 * 109.47133 * 171.07414 * 12 9 8 14 14 C 1.53000 * 109.47492 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47506 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00163 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00292 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99657 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47328 * 59.99948 * 19 17 15 21 21 H 1.48498 * 109.47029 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47062 * 299.99564 * 19 17 15 23 23 C 1.39873 * 107.92343 * 359.61099 * 4 3 2 24 24 N 1.30838 * 108.20010 * 0.24332 * 23 4 3 25 25 H 1.08990 * 109.47258 * 270.31161 * 1 2 3 26 26 H 1.08999 * 109.46842 * 30.31644 * 1 2 3 27 27 H 1.09004 * 109.46880 * 150.31184 * 1 2 3 28 28 H 1.07998 * 126.12668 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47583 * 292.30696 * 6 5 4 30 30 H 1.09003 * 109.46584 * 172.30522 * 6 5 4 31 31 H 1.09000 * 109.46892 * 52.31004 * 6 5 4 32 32 H 1.09006 * 109.46674 * 314.18771 * 7 5 4 33 33 H 1.08995 * 109.47331 * 74.18352 * 7 5 4 34 34 H 1.08997 * 109.47841 * 194.19202 * 7 5 4 35 35 H 0.96997 * 119.99938 * 7.44030 * 8 5 4 36 36 H 1.08998 * 109.47439 * 291.07462 * 12 9 8 37 37 H 1.09002 * 109.46849 * 51.07506 * 12 9 8 38 38 H 1.09002 * 109.47401 * 300.00588 * 13 12 9 39 39 H 1.09002 * 109.47178 * 60.00293 * 13 12 9 40 40 H 1.08995 * 109.47116 * 300.00965 * 14 13 12 41 41 H 1.09009 * 109.46614 * 60.00427 * 14 13 12 42 42 H 0.97006 * 119.99890 * 179.97438 * 18 17 15 43 43 H 1.08000 * 125.89754 * 180.25981 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0032 5 6 4.7680 1.5453 -0.0071 6 6 4.7620 2.4228 -1.2605 7 6 4.7616 2.4344 1.2379 8 7 5.9701 0.7080 -0.0031 9 16 7.4623 1.4024 0.1798 10 8 8.3733 0.3249 0.0118 11 8 7.4510 2.4998 -0.7228 12 6 7.4809 1.9899 1.8960 13 6 8.8918 2.4564 2.2601 14 6 8.9074 2.9525 3.7073 15 6 10.2969 3.4127 4.0657 16 1 11.0898 3.3565 3.3346 17 6 10.5563 3.9044 5.3274 18 7 9.5911 3.9714 6.2183 19 14 12.2785 4.4754 5.7715 20 1 12.6826 5.5806 4.8657 21 1 12.2939 4.9557 7.1766 22 1 13.2284 3.3433 5.6254 23 6 3.5347 -0.7321 0.0038 24 7 2.2891 -1.1328 0.0057 25 1 -0.3633 0.0056 1.0275 26 1 -0.3633 0.8871 -0.5187 27 1 -0.3633 -0.8928 -0.5090 28 1 1.9281 2.1194 -0.0004 29 1 4.9041 1.7980 -2.1422 30 1 5.5700 3.1516 -1.1976 31 1 3.8075 2.9440 -1.3346 32 1 3.7697 2.8664 1.3707 33 1 5.0176 1.8366 2.1126 34 1 5.4928 3.2337 1.1175 35 1 5.8920 -0.2532 -0.1075 36 1 6.7843 2.8214 2.0030 37 1 7.1835 1.1789 2.5608 38 1 9.5884 1.6249 2.1530 39 1 9.1892 3.2674 1.5952 40 1 8.2108 3.7841 3.8139 41 1 8.6098 2.1418 4.3725 42 1 9.7737 4.3171 7.1061 43 1 4.4054 -1.3710 0.0073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547410407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:19 Heat of formation + Delta-G solvation = -25.284036 kcal Electronic energy + Delta-G solvation = -24650.748890 eV Core-core repulsion = 21051.947859 eV Total energy + Delta-G solvation = -3598.801032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27876 -38.71660 -37.82817 -36.95782 -36.45808 -34.19164 -33.87811 -32.20918 -30.20143 -29.66165 -28.04549 -27.60680 -25.49715 -23.47472 -22.19472 -22.02791 -20.61959 -20.07245 -18.99612 -18.58175 -17.83539 -17.23710 -16.97522 -16.46158 -16.30962 -15.95212 -15.56983 -15.33393 -14.94753 -14.64949 -14.44587 -14.17437 -13.93067 -13.74025 -13.64492 -13.42803 -13.35831 -13.14980 -13.11145 -12.97556 -12.81933 -12.71006 -12.58620 -12.37331 -12.36074 -12.07258 -12.02791 -11.66383 -11.34912 -11.28480 -11.11068 -10.54894 -10.47563 -10.35298 -9.29510 -8.20686 -6.31320 -0.66548 0.96406 1.41220 1.43696 1.51522 1.68733 1.79642 1.84710 2.41321 2.81222 3.12796 3.26886 3.53651 3.76551 3.88488 3.95353 4.00108 4.17228 4.27104 4.31980 4.39996 4.47421 4.48628 4.68273 4.74043 4.75502 4.80159 4.92434 4.94310 5.05007 5.10524 5.12098 5.24416 5.45307 5.48449 5.55654 5.63895 5.67078 5.82199 6.13726 6.16435 6.22580 6.73139 6.84237 7.37713 8.90519 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.002944 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.752104 B = 9507.406298 C =10153.368748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.378 5.378 3 C 0.076 3.924 4 C -0.243 4.243 5 C 0.264 3.736 6 C -0.174 4.174 7 C -0.201 4.201 8 N -1.104 6.104 9 S 2.628 3.372 10 O -0.997 6.997 11 O -0.976 6.976 12 C -0.622 4.622 13 C -0.105 4.105 14 C 0.033 3.967 15 C -0.553 4.553 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C 0.042 3.958 24 N -0.332 5.332 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.211 0.789 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.421 0.579 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.005 0.995 41 H 0.001 0.999 42 H 0.265 0.735 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.347 -5.028 -13.745 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.160 5.160 3 C -0.072 4.072 4 C -0.256 4.256 5 C 0.175 3.825 6 C -0.233 4.233 7 C -0.259 4.259 8 N -0.864 5.864 9 S 2.723 3.277 10 O -0.987 6.987 11 O -0.966 6.966 12 C -0.752 4.752 13 C -0.144 4.144 14 C -0.005 4.005 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.143 4.143 24 N -0.154 5.154 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.228 0.772 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -21.691 -5.770 -14.253 26.588 hybrid contribution 1.149 0.414 1.165 1.688 sum -20.542 -5.356 -13.089 24.939 Atomic orbital electron populations 1.22208 0.71953 1.06009 1.04599 1.48818 1.07962 1.03321 1.55861 1.22712 0.89786 0.94757 0.99961 1.19893 0.94103 0.93329 1.18265 1.18286 0.80556 0.88026 0.95667 1.22638 1.04253 0.99997 0.96387 1.23047 1.05769 0.99780 0.97318 1.55557 1.21874 1.18875 1.90127 1.04270 0.72438 0.73618 0.77357 1.93526 1.63398 1.55119 1.86697 1.93520 1.85952 1.56280 1.60849 1.31066 1.06363 1.13946 1.23834 1.21308 0.92388 1.00672 1.00075 1.18940 0.95717 0.95174 0.90707 1.21726 0.96812 1.42277 0.98246 0.92247 1.25914 1.01391 0.95780 0.96407 1.70062 1.34189 1.47183 1.05495 0.85560 0.79575 0.79006 0.77306 1.19156 1.20646 1.19375 1.23905 0.95434 0.95157 0.99790 1.77325 1.02198 1.09968 1.25942 0.89707 0.86430 0.89355 0.77207 0.92794 0.90577 0.89358 0.87730 0.90580 0.91376 0.74242 0.82711 0.83769 0.91855 0.91585 0.97650 0.98045 0.92664 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.47 127.77 1.47 2.04 16 2 N -0.38 -5.67 4.01 -369.56 -1.48 -7.15 16 3 C 0.08 0.98 10.40 83.54 0.87 1.85 16 4 C -0.24 -4.17 4.80 -20.14 -0.10 -4.26 16 5 C 0.26 4.87 1.03 2.86 0.00 4.87 16 6 C -0.17 -3.29 8.04 71.98 0.58 -2.71 16 7 C -0.20 -3.47 6.77 71.98 0.49 -2.99 16 8 N -1.10 -23.46 5.42 -155.18 -0.84 -24.31 16 9 S 2.63 75.57 5.15 -56.49 -0.29 75.28 16 10 O -1.00 -35.43 18.08 -127.65 -2.31 -37.74 16 11 O -0.98 -31.76 14.97 -127.65 -1.91 -33.67 16 12 C -0.62 -18.67 4.47 71.98 0.32 -18.35 16 13 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 14 C 0.03 1.69 4.97 29.85 0.15 1.84 16 15 C -0.55 -31.45 9.11 25.60 0.23 -31.21 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.00 0.19 5.46 84.66 0.46 0.65 16 18 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 19 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C 0.04 0.83 11.14 85.24 0.95 1.78 16 24 N -0.33 -7.10 12.58 -57.02 -0.72 -7.82 16 25 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.76 5.74 -2.39 -0.01 1.74 16 31 H 0.09 1.13 7.79 -2.39 -0.02 1.11 16 32 H 0.10 1.25 7.60 -2.38 -0.02 1.23 16 33 H 0.08 1.36 7.05 -2.39 -0.02 1.34 16 34 H 0.07 1.27 5.93 -2.39 -0.01 1.26 16 35 H 0.42 7.62 6.60 -96.75 -0.64 6.98 16 36 H 0.16 4.10 4.89 -2.39 -0.01 4.09 16 37 H 0.14 3.85 8.10 -2.39 -0.02 3.83 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 43 H 0.19 3.02 6.73 -2.91 -0.02 3.00 16 Total: -1.00 -79.69 356.85 0.72 -78.97 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.38 Total: 16.16 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 5.58 Total: -50.61 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -2.76 Total: -94.62 kcal Atomic # 8 Polarization: -67.19 SS G_CDS: -4.22 Total: -71.41 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 75.57 SS G_CDS: -0.29 Total: 75.28 kcal Total: -79.69 0.72 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547410407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.688 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds