Wall clock time and date at job start Tue Mar 31 2020 10:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34950 * 126.03301 * 2 1 4 4 C 1.35319 * 107.74356 * 179.97438 * 3 2 1 5 5 C 1.39868 * 107.91694 * 359.97438 * 4 3 2 6 6 S 1.76201 * 125.89449 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40303 * 263.55401 * 6 5 4 8 8 O 1.42100 * 106.40384 * 36.47596 * 6 5 4 9 9 N 1.65599 * 107.21935 * 150.01580 * 6 5 4 10 10 C 1.46499 * 120.00211 * 270.00021 * 9 6 5 11 11 C 1.50692 * 109.47216 * 93.94092 * 10 9 6 12 12 H 1.08000 * 120.00301 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00163 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99831 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47526 * 59.99650 * 15 13 11 17 17 H 1.48500 * 109.47120 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47261 * 299.99575 * 15 13 11 19 19 C 1.46504 * 119.99961 * 89.99596 * 9 6 5 20 20 C 1.53000 * 109.46772 * 95.92768 * 19 9 6 21 21 C 1.52997 * 109.47362 * 63.93280 * 20 19 9 22 22 C 1.53001 * 109.47104 * 183.93147 * 20 19 9 23 23 C 1.52998 * 109.47355 * 303.93073 * 20 19 9 24 24 N 1.30830 * 108.20590 * 359.97438 * 5 4 3 25 25 H 1.08999 * 109.47473 * 270.02932 * 1 2 3 26 26 H 1.09000 * 109.46756 * 30.03242 * 1 2 3 27 27 H 1.08996 * 109.46774 * 150.02859 * 1 2 3 28 28 H 1.08003 * 126.12814 * 359.94494 * 3 2 1 29 29 H 1.07994 * 126.03776 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47394 * 213.94505 * 10 9 6 31 31 H 1.09004 * 109.46902 * 333.93988 * 10 9 6 32 32 H 0.97003 * 120.00210 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47104 * 215.92292 * 19 9 6 34 34 H 1.08990 * 109.47245 * 335.93176 * 19 9 6 35 35 H 1.09002 * 109.47216 * 51.45362 * 21 20 19 36 36 H 1.09003 * 109.47306 * 171.45649 * 21 20 19 37 37 H 1.09008 * 109.47158 * 291.45286 * 21 20 19 38 38 H 1.08993 * 109.47406 * 59.99808 * 22 20 19 39 39 H 1.08997 * 109.47669 * 180.02562 * 22 20 19 40 40 H 1.08998 * 109.47051 * 300.00032 * 22 20 19 41 41 H 1.08999 * 109.47046 * 60.00039 * 23 20 19 42 42 H 1.09003 * 109.47258 * 180.02562 * 23 20 19 43 43 H 1.09007 * 109.47041 * 300.00027 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6667 0.0006 5 6 3.5347 -0.7320 0.0015 6 16 4.9553 -1.7743 0.0019 7 8 5.1880 -2.1360 -1.3525 8 8 5.9275 -1.1274 0.8116 9 7 4.5403 -3.1684 0.7935 10 6 4.7320 -3.2731 2.2421 11 6 3.4556 -2.8919 2.9466 12 1 2.5881 -2.6012 2.3727 13 6 3.3952 -2.9144 4.3239 14 7 4.4513 -3.2689 5.0227 15 14 1.8127 -2.4425 5.1971 16 1 0.7224 -3.3582 4.7752 17 1 2.0074 -2.5474 6.6656 18 1 1.4503 -1.0461 4.8449 19 6 3.9813 -4.2970 0.0451 20 6 5.0990 -5.2827 -0.3015 21 6 5.6794 -5.8693 0.9868 22 6 4.5337 -6.4112 -1.1663 23 6 6.2015 -4.5533 -1.0717 24 7 2.2892 -1.1327 0.0021 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.9281 2.1194 -0.0008 29 1 4.4211 1.2964 0.0003 30 1 4.9974 -4.2983 2.5003 31 1 5.5327 -2.6015 2.5521 32 1 4.4089 -3.2844 5.9917 33 1 3.2294 -4.7996 0.6535 34 1 3.5212 -3.9320 -0.8730 35 1 4.8704 -6.2556 1.6069 36 1 6.3664 -6.6788 0.7402 37 1 6.2149 -5.0915 1.5313 38 1 4.1202 -5.9933 -2.0842 39 1 5.3298 -7.1137 -1.4129 40 1 3.7483 -6.9308 -0.6176 41 1 6.6042 -3.7494 -0.4556 42 1 6.9976 -5.2556 -1.3191 43 1 5.7880 -4.1354 -1.9897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563053054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:57 Heat of formation + Delta-G solvation = 2.628647 kcal Electronic energy + Delta-G solvation = -26343.569152 eV Core-core repulsion = 22745.978505 eV Total energy + Delta-G solvation = -3597.590647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95723 -37.91607 -36.50717 -35.22036 -33.99815 -33.25039 -32.15670 -30.07484 -27.67287 -27.04617 -26.76567 -26.58166 -24.86737 -22.31749 -21.67374 -21.10608 -18.75064 -17.95625 -17.33702 -16.68281 -16.41600 -15.74981 -15.58530 -15.25183 -14.48836 -14.33147 -13.98289 -13.81522 -13.54186 -13.32819 -12.87327 -12.77694 -12.58835 -12.42145 -12.25668 -12.02123 -11.61472 -11.46463 -11.36344 -11.17999 -11.11708 -11.09439 -11.05223 -10.81752 -10.72569 -10.53213 -10.46967 -10.11307 -9.94306 -9.89682 -9.61538 -9.47662 -8.56317 -8.40369 -7.91880 -6.03734 -4.07382 1.07865 1.83264 2.55149 2.64512 3.27280 3.32498 3.33647 3.63203 4.28967 4.41811 4.56741 4.83166 5.08224 5.17617 5.28742 5.29834 5.31384 5.33062 5.42190 5.51386 5.74549 5.77411 5.89473 5.98482 6.04959 6.15493 6.26088 6.31169 6.35845 6.44674 6.47134 6.63294 6.67971 6.71202 6.89143 7.01381 7.03571 7.43014 7.50413 7.55030 7.72950 7.95068 8.25294 8.97962 9.56910 11.04510 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.008069 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.957529 B = 3469.187728 C = 5167.871932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.042 3.958 4 C -0.201 4.201 5 C -0.462 4.462 6 S 2.713 3.287 7 O -0.963 6.963 8 O -0.948 6.948 9 N -0.966 5.966 10 C 0.235 3.765 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.281 1.281 19 C 0.145 3.855 20 C -0.087 4.087 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.139 4.139 24 N -0.180 5.180 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.180 0.820 29 H 0.157 0.843 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.046 0.954 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 2.691 -11.488 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.150 5.150 3 C -0.103 4.103 4 C -0.231 4.231 5 C -0.709 4.709 6 S 2.795 3.205 7 O -0.953 6.953 8 O -0.937 6.937 9 N -0.805 5.805 10 C 0.114 3.886 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.207 1.207 19 C 0.018 3.982 20 C -0.089 4.089 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.196 4.196 24 N -0.005 5.005 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.197 0.803 29 H 0.175 0.825 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.240 1.930 -11.634 12.905 hybrid contribution -1.342 1.441 1.032 2.223 sum -6.581 3.370 -10.603 12.926 Atomic orbital electron populations 1.21941 0.74214 1.04504 1.03866 1.48938 1.07010 1.04413 1.54589 1.22513 0.91058 0.93373 1.03308 1.21083 0.97799 0.92190 1.12052 1.35476 1.13115 1.09772 1.12495 1.01726 0.72962 0.72521 0.73245 1.93571 1.83976 1.82323 1.35395 1.93580 1.55025 1.75731 1.69399 1.57164 1.78650 1.25152 1.19560 1.19505 0.97360 1.00218 0.71539 1.21611 0.98500 1.45895 0.91450 0.91742 1.24892 0.96169 0.95316 0.97409 1.69910 1.28589 1.47808 1.06677 0.86691 0.84054 0.78844 0.78553 1.20296 1.21205 1.20662 1.21187 0.94765 0.87102 0.95113 1.20983 0.96515 0.95493 0.95896 1.22015 1.00780 1.00431 0.96595 1.21782 1.00614 0.97667 0.99267 1.22014 0.97697 0.99087 1.00837 1.77358 0.99479 1.07555 1.16138 0.90295 0.89384 0.88976 0.80341 0.82506 0.92358 0.93221 0.92696 0.89998 0.91368 0.92306 0.93857 0.91243 0.92786 0.92856 0.92688 0.94136 0.93444 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 11.47 59.85 0.69 1.66 16 2 N -0.36 -5.67 4.01 -68.16 -0.27 -5.95 16 3 C 0.04 0.61 11.49 -17.22 -0.20 0.41 16 4 C -0.20 -3.49 10.71 -40.01 -0.43 -3.91 16 5 C -0.46 -9.32 7.20 -17.37 -0.13 -9.45 16 6 S 2.71 57.20 4.79 -107.50 -0.51 56.69 16 7 O -0.96 -19.71 13.60 -57.17 -0.78 -20.49 16 8 O -0.95 -22.50 16.54 -57.17 -0.95 -23.44 16 9 N -0.97 -20.43 2.16 -115.67 -0.25 -20.68 16 10 C 0.24 5.84 4.67 -5.20 -0.02 5.82 16 11 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.14 2.63 4.60 -4.04 -0.02 2.61 16 20 C -0.09 -1.40 0.85 -154.51 -0.13 -1.53 16 21 C -0.14 -2.36 7.04 37.16 0.26 -2.10 16 22 C -0.14 -1.77 8.46 37.16 0.31 -1.46 16 23 C -0.14 -2.31 6.86 37.16 0.25 -2.06 16 24 N -0.18 -3.51 12.57 31.27 0.39 -3.12 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.06 1.45 5.14 -51.93 -0.27 1.18 16 31 H 0.05 1.36 6.93 -51.93 -0.36 1.00 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 33 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 35 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 36 H 0.04 0.63 8.13 -51.93 -0.42 0.20 16 37 H 0.07 1.30 6.13 -51.92 -0.32 0.99 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.74 6.19 -51.93 -0.32 0.42 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.29 6.79 -51.93 -0.35 0.94 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -34.05 358.19 -7.70 -41.75 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.62 Total: 1.46 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.08 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.61 Total: -54.73 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.72 Total: -43.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -0.51 Total: 56.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.05 -7.70 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563053054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.383 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds