Wall clock time and date at job start Tue Mar 31 2020 12:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 N 1.46499 * 109.47433 * 94.99634 * 8 7 6 10 10 S 1.65602 * 119.99829 * 165.00075 * 9 8 7 11 11 O 1.42094 * 104.27587 * 181.07322 * 10 9 8 12 12 O 1.42100 * 104.27708 * 308.92969 * 10 9 8 13 13 C 1.81401 * 104.44831 * 65.00195 * 10 9 8 14 14 C 1.52997 * 109.46783 * 180.02562 * 13 10 9 15 15 C 1.53003 * 109.46953 * 180.02562 * 14 13 10 16 16 C 1.50702 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00320 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00006 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99731 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47203 * 59.99362 * 20 18 16 22 22 H 1.48501 * 109.47477 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46970 * 299.99422 * 20 18 16 24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 34 34 H 1.09003 * 109.46701 * 215.00322 * 8 7 6 35 35 H 1.09004 * 109.46787 * 334.99601 * 8 7 6 36 36 H 0.96993 * 119.99646 * 345.00468 * 9 8 7 37 37 H 1.09003 * 109.46726 * 299.99688 * 13 10 9 38 38 H 1.08999 * 109.46884 * 59.99822 * 13 10 9 39 39 H 1.08995 * 109.47454 * 299.99558 * 14 13 10 40 40 H 1.08999 * 109.47590 * 60.00213 * 14 13 10 41 41 H 1.09000 * 109.46992 * 299.99374 * 15 14 13 42 42 H 1.08992 * 109.47491 * 59.99878 * 15 14 13 43 43 H 0.96999 * 119.99503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 7 4.6772 -3.7642 -2.7548 10 16 5.3944 -5.2518 -2.8774 11 8 6.7501 -5.0175 -2.5222 12 8 4.5690 -6.1043 -2.0956 13 6 5.2612 -5.6748 -4.6364 14 6 5.8956 -7.0455 -4.8806 15 6 5.7838 -7.4020 -6.3643 16 6 6.4082 -8.7524 -6.6048 17 1 6.8417 -9.3012 -5.7819 18 6 6.4269 -9.2868 -7.8757 19 7 5.8994 -8.6182 -8.8779 20 14 7.2014 -10.9602 -8.1740 21 1 6.4938 -11.9845 -7.3644 22 1 7.0928 -11.3064 -9.6140 23 1 8.6327 -10.9204 -7.7806 24 7 2.3857 -2.0399 -1.2766 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9883 0.8861 -2.6859 33 1 2.8977 -0.9843 -4.2880 34 1 2.6967 -4.4198 -2.5377 35 1 3.0748 -3.6642 -4.1044 36 1 5.2048 -2.9908 -2.5014 37 1 4.2103 -5.7048 -4.9242 38 1 5.7796 -4.9228 -5.2312 39 1 6.9464 -7.0160 -4.5927 40 1 5.3768 -7.7973 -4.2859 41 1 4.7331 -7.4315 -6.6528 42 1 6.3029 -6.6503 -6.9588 43 1 5.9122 -8.9943 -9.7719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563654129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:41 Heat of formation + Delta-G solvation = -14.462620 kcal Electronic energy + Delta-G solvation = -23424.120593 eV Core-core repulsion = 19825.788813 eV Total energy + Delta-G solvation = -3598.331780 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56603 -36.90224 -36.59407 -35.69091 -34.97126 -34.62894 -32.15336 -30.66084 -30.15604 -27.89487 -27.76989 -26.33922 -23.68850 -23.01974 -20.69786 -20.51872 -20.16051 -19.13566 -17.62042 -17.32162 -16.61970 -16.31766 -15.70067 -15.56566 -15.13054 -14.78194 -14.50356 -14.35984 -14.21787 -13.91757 -13.77445 -13.25533 -12.99432 -12.75349 -12.59091 -12.50473 -12.24010 -11.95494 -11.88123 -11.75844 -11.73090 -11.71309 -11.66352 -11.18853 -10.87264 -10.86144 -10.83722 -10.40727 -9.90934 -9.70362 -9.60284 -9.29061 -9.05579 -8.86076 -8.37690 -6.03018 -4.05865 0.49873 1.59653 2.11201 2.38838 3.10000 3.34409 3.38047 3.41486 3.93857 4.02531 4.28971 4.35535 4.42925 4.45066 4.49799 4.51601 4.85810 4.88557 5.04681 5.08505 5.11529 5.22575 5.23431 5.30327 5.33579 5.37104 5.45517 5.57270 5.59233 5.74464 5.81892 5.94419 6.31312 6.35308 6.49450 6.73636 6.90562 6.95121 7.46613 7.60074 7.70519 7.95205 8.35894 9.00201 9.58592 11.08147 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.002213 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.268655 B =12650.633679 C =13059.687024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.365 5.365 5 C 0.052 3.948 6 C -0.259 4.259 7 C 0.063 3.937 8 C 0.198 3.802 9 N -1.119 6.119 10 S 2.602 3.398 11 O -0.963 6.963 12 O -0.960 6.960 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 N -0.275 5.275 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.416 0.584 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 23.360 14.822 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.222 4.222 4 N -0.149 5.149 5 C -0.094 4.094 6 C -0.289 4.289 7 C -0.104 4.104 8 C 0.070 3.930 9 N -0.878 5.878 10 S 2.698 3.302 11 O -0.953 6.953 12 O -0.950 6.950 13 C -0.741 4.741 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.097 5.097 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.169 0.831 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.151 22.319 16.625 29.981 hybrid contribution 0.429 0.176 -1.698 1.760 sum -10.722 22.495 14.927 29.048 Atomic orbital electron populations 1.22242 0.93497 1.03499 1.03062 1.21296 0.94895 0.92740 0.85967 1.22195 1.02440 0.93911 1.03679 1.48912 1.50269 1.07216 1.08467 1.22447 1.01344 0.99992 0.85589 1.21457 1.13391 0.92230 1.01773 1.22140 1.00360 0.96368 0.91570 1.19544 0.80649 0.92715 1.00096 1.55702 1.16497 1.28658 1.86895 1.05289 0.73632 0.72863 0.78431 1.93576 1.34900 1.83948 1.82878 1.93572 1.69009 1.65853 1.66581 1.30550 1.10900 1.09516 1.23086 1.21502 0.99405 0.89766 1.03906 1.19060 0.97672 0.96589 0.87446 1.21227 1.38117 1.03199 0.93906 0.92420 1.25021 0.95458 0.97752 0.96183 1.69951 1.45186 1.38196 1.00125 0.86610 0.79913 0.84198 0.77028 1.20135 1.21281 1.20146 1.77405 1.19669 0.92950 1.19721 0.90431 0.91872 0.91455 0.87872 0.91498 0.89893 0.91384 0.81129 0.83130 0.88736 0.89414 0.75051 0.85383 0.85160 0.91581 0.91522 0.96081 0.96102 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.52 37.16 0.35 -0.45 16 2 C 0.15 0.92 3.93 -67.93 -0.27 0.65 16 3 C -0.16 -0.59 8.84 37.16 0.33 -0.26 16 4 N -0.37 -3.34 3.52 -54.87 -0.19 -3.54 16 5 C 0.05 0.40 10.59 -17.22 -0.18 0.22 16 6 C -0.26 -2.36 10.74 -40.01 -0.43 -2.79 16 7 C 0.06 0.71 6.61 -82.41 -0.55 0.17 16 8 C 0.20 2.14 6.69 -5.19 -0.03 2.11 16 9 N -1.12 -13.17 5.88 -11.65 -0.07 -13.24 16 10 S 2.60 39.17 5.46 -107.50 -0.59 38.58 16 11 O -0.96 -17.39 18.08 -57.54 -1.04 -18.43 16 12 O -0.96 -17.44 17.50 -57.54 -1.01 -18.45 16 13 C -0.61 -9.25 6.07 37.16 0.23 -9.02 16 14 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 N -0.27 -3.41 12.58 33.67 0.42 -2.98 16 25 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.19 7.16 -51.93 -0.37 -0.19 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.17 0.74 7.27 -52.49 -0.38 0.36 16 33 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.42 4.44 8.61 -34.47 -0.30 4.15 16 37 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -37.53 375.53 -9.25 -46.78 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.91 Total: -0.48 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -1.24 Total: -24.69 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.90 Total: -45.65 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.05 Total: -36.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 39.17 SS G_CDS: -0.59 Total: 38.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.53 -9.25 -46.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563654129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.315 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds