Wall clock time and date at job start Tue Mar 31 2020 12:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 N 1.46499 * 109.47433 * 94.99634 * 8 7 6 10 10 S 1.65602 * 119.99829 * 165.00075 * 9 8 7 11 11 O 1.42094 * 104.27587 * 181.07322 * 10 9 8 12 12 O 1.42100 * 104.27708 * 308.92969 * 10 9 8 13 13 C 1.81401 * 104.44831 * 65.00195 * 10 9 8 14 14 C 1.52997 * 109.46783 * 180.02562 * 13 10 9 15 15 C 1.53003 * 109.46953 * 180.02562 * 14 13 10 16 16 C 1.50702 * 109.47069 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00320 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00006 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99731 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00181 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47203 * 59.99362 * 20 18 16 22 22 H 1.48501 * 109.47477 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46970 * 299.99422 * 20 18 16 24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 34 34 H 1.09003 * 109.46701 * 215.00322 * 8 7 6 35 35 H 1.09004 * 109.46787 * 334.99601 * 8 7 6 36 36 H 0.96993 * 119.99646 * 345.00468 * 9 8 7 37 37 H 1.09003 * 109.46726 * 299.99688 * 13 10 9 38 38 H 1.08999 * 109.46884 * 59.99822 * 13 10 9 39 39 H 1.08995 * 109.47454 * 299.99558 * 14 13 10 40 40 H 1.08999 * 109.47590 * 60.00213 * 14 13 10 41 41 H 1.09000 * 109.46992 * 299.99374 * 15 14 13 42 42 H 1.08992 * 109.47491 * 59.99878 * 15 14 13 43 43 H 0.96999 * 119.99503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 7 4.6772 -3.7642 -2.7548 10 16 5.3944 -5.2518 -2.8774 11 8 6.7501 -5.0175 -2.5222 12 8 4.5690 -6.1043 -2.0956 13 6 5.2612 -5.6748 -4.6364 14 6 5.8956 -7.0455 -4.8806 15 6 5.7838 -7.4020 -6.3643 16 6 6.4082 -8.7524 -6.6048 17 1 6.8417 -9.3012 -5.7819 18 6 6.4269 -9.2868 -7.8757 19 7 5.8994 -8.6182 -8.8779 20 14 7.2014 -10.9602 -8.1740 21 1 6.4938 -11.9845 -7.3644 22 1 7.0928 -11.3064 -9.6140 23 1 8.6327 -10.9204 -7.7806 24 7 2.3857 -2.0399 -1.2766 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9883 0.8861 -2.6859 33 1 2.8977 -0.9843 -4.2880 34 1 2.6967 -4.4198 -2.5377 35 1 3.0748 -3.6642 -4.1044 36 1 5.2048 -2.9908 -2.5014 37 1 4.2103 -5.7048 -4.9242 38 1 5.7796 -4.9228 -5.2312 39 1 6.9464 -7.0160 -4.5927 40 1 5.3768 -7.7973 -4.2859 41 1 4.7331 -7.4315 -6.6528 42 1 6.3029 -6.6503 -6.9588 43 1 5.9122 -8.9943 -9.7719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563654129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:40 Heat of formation + Delta-G solvation = -42.162313 kcal Electronic energy + Delta-G solvation = -23425.321742 eV Core-core repulsion = 19825.788813 eV Total energy + Delta-G solvation = -3599.532929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.23201 -38.20537 -37.29067 -37.02981 -36.43179 -35.75964 -34.13440 -31.36746 -30.80840 -29.62093 -28.22371 -27.14471 -25.59374 -23.57564 -22.39805 -21.24532 -20.82974 -20.33731 -18.71173 -18.51126 -18.05393 -17.42713 -17.13196 -16.48709 -16.31190 -16.14176 -15.62298 -15.26902 -15.14045 -14.68285 -14.46393 -14.39504 -14.06458 -13.77444 -13.59727 -13.47096 -13.21330 -13.18769 -13.12442 -13.03235 -12.94757 -12.75333 -12.70840 -12.62346 -12.34052 -12.13986 -12.08332 -11.70413 -11.58434 -11.35576 -11.10686 -10.54493 -10.45666 -10.30040 -9.51841 -8.20396 -6.30901 -0.74884 0.90579 1.41508 1.43977 1.51823 1.53245 1.59303 2.09613 2.41660 2.78446 3.13000 3.25336 3.43084 3.70807 3.79862 3.92594 3.93657 3.99281 4.10078 4.23871 4.33484 4.44317 4.59385 4.64514 4.69616 4.77282 4.80526 4.83115 4.85739 4.93055 5.01255 5.10641 5.14373 5.17726 5.22650 5.48582 5.66487 5.67370 5.82547 6.02280 6.19082 6.22740 6.76133 6.84548 7.37947 8.90734 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.002213 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.268655 B =12650.633679 C =13059.687024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 C -0.156 4.156 4 N -0.366 5.366 5 C 0.060 3.940 6 C -0.272 4.272 7 C 0.048 3.952 8 C 0.190 3.810 9 N -1.105 6.105 10 S 2.631 3.369 11 O -0.993 6.993 12 O -0.992 6.992 13 C -0.604 4.604 14 C -0.108 4.108 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 N -0.325 5.325 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.209 0.791 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.423 0.577 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.005 0.995 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 24.994 14.828 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 C -0.214 4.214 4 N -0.150 5.150 5 C -0.086 4.086 6 C -0.301 4.301 7 C -0.118 4.118 8 C 0.063 3.937 9 N -0.866 5.866 10 S 2.727 3.273 11 O -0.983 6.983 12 O -0.982 6.982 13 C -0.735 4.735 14 C -0.147 4.147 15 C -0.007 4.007 16 C -0.591 4.591 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 N -0.149 5.149 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.225 0.775 33 H 0.186 0.814 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.258 0.742 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.591 23.952 16.651 31.390 hybrid contribution 0.494 -0.225 -1.660 1.747 sum -11.097 23.728 14.991 30.181 Atomic orbital electron populations 1.22199 0.92554 1.02374 1.04491 1.21599 0.95650 0.93849 0.84705 1.22175 1.01756 0.92129 1.05366 1.49206 1.49640 1.06342 1.09765 1.23054 0.99561 1.01307 0.84672 1.21749 1.13888 0.91688 1.02806 1.22244 1.00798 0.96974 0.91785 1.19783 0.79428 0.92658 1.01864 1.55299 1.17093 1.27583 1.86664 1.04199 0.72467 0.72885 0.77733 1.93529 1.36822 1.84588 1.83385 1.93532 1.69624 1.67478 1.67590 1.30462 1.12295 1.07097 1.23666 1.21329 1.00113 0.92804 1.00477 1.18962 0.96069 0.95167 0.90514 1.21726 1.38400 1.04682 0.94298 0.92267 1.25923 0.95935 1.01746 0.95989 1.70062 1.46247 1.39975 1.00558 0.85546 0.79204 0.79431 0.77165 1.19329 1.20614 1.19329 1.77317 1.21493 0.95230 1.20825 0.88203 0.91199 0.93805 0.89048 0.90073 0.87948 0.92356 0.77465 0.81377 0.89961 0.86385 0.74160 0.83051 0.83040 0.91648 0.91542 0.97606 0.97702 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.52 71.98 0.69 -0.65 16 2 C 0.14 1.56 3.93 44.99 0.18 1.73 16 3 C -0.16 -0.74 8.84 71.98 0.64 -0.10 16 4 N -0.37 -6.33 3.52 -327.49 -1.15 -7.48 16 5 C 0.06 0.80 10.59 83.54 0.89 1.69 16 6 C -0.27 -4.45 10.74 21.99 0.24 -4.21 16 7 C 0.05 1.05 6.61 43.10 0.29 1.34 16 8 C 0.19 3.95 6.69 85.63 0.57 4.52 16 9 N -1.11 -25.05 5.88 -190.78 -1.12 -26.17 16 10 S 2.63 77.81 5.46 -56.49 -0.31 77.51 16 11 O -0.99 -35.56 18.08 -127.65 -2.31 -37.87 16 12 O -0.99 -36.10 17.50 -127.65 -2.23 -38.33 16 13 C -0.60 -17.64 6.07 71.98 0.44 -17.21 16 14 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16 15 C 0.03 1.60 4.97 29.85 0.15 1.75 16 16 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 18 C 0.00 0.13 5.46 84.65 0.46 0.60 16 19 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 N -0.32 -8.07 12.58 -47.38 -0.60 -8.66 16 25 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 0.17 7.16 -2.39 -0.02 0.15 16 30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.21 1.01 7.27 -2.91 -0.02 0.99 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.08 1.90 7.69 -2.39 -0.02 1.89 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.42 8.67 8.61 -96.75 -0.83 7.83 16 37 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.15 3.80 8.14 -2.39 -0.02 3.79 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -81.91 375.53 -0.33 -82.25 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.16 Total: 13.71 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 4.92 Total: -46.06 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -2.59 Total: -97.64 kcal Atomic # 8 Polarization: -71.65 SS G_CDS: -4.54 Total: -76.20 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 77.81 SS G_CDS: -0.31 Total: 77.51 kcal Total: -81.91 -0.33 -82.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563654129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.084 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds