Wall clock time and date at job start Tue Mar 31 2020 12:02:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.47060 * 2 1
4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3
5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1
6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2
7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4
8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5
9 9 N 1.46499 * 109.47433 * 94.99634 * 8 7 6
10 10 S 1.65602 * 119.99829 * 165.00075 * 9 8 7
11 11 O 1.42094 * 104.27587 * 181.07322 * 10 9 8
12 12 O 1.42100 * 104.27708 * 308.92969 * 10 9 8
13 13 C 1.81401 * 104.44831 * 65.00195 * 10 9 8
14 14 C 1.52997 * 109.46783 * 180.02562 * 13 10 9
15 15 C 1.53003 * 109.46953 * 180.02562 * 14 13 10
16 16 C 1.50702 * 109.47069 * 180.02562 * 15 14 13
17 17 H 1.07998 * 120.00320 * 359.97438 * 16 15 14
18 18 C 1.37875 * 120.00006 * 180.02562 * 16 15 14
19 19 N 1.31521 * 119.99731 * 359.97438 * 18 16 15
20 20 Si 1.86796 * 120.00181 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47203 * 59.99362 * 20 18 16
22 22 H 1.48501 * 109.47477 * 179.97438 * 20 18 16
23 23 H 1.48496 * 109.46970 * 299.99422 * 20 18 16
24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5
25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3
26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3
27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3
29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1
30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1
31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1
32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2
33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4
34 34 H 1.09003 * 109.46701 * 215.00322 * 8 7 6
35 35 H 1.09004 * 109.46787 * 334.99601 * 8 7 6
36 36 H 0.96993 * 119.99646 * 345.00468 * 9 8 7
37 37 H 1.09003 * 109.46726 * 299.99688 * 13 10 9
38 38 H 1.08999 * 109.46884 * 59.99822 * 13 10 9
39 39 H 1.08995 * 109.47454 * 299.99558 * 14 13 10
40 40 H 1.08999 * 109.47590 * 60.00213 * 14 13 10
41 41 H 1.09000 * 109.46992 * 299.99374 * 15 14 13
42 42 H 1.08992 * 109.47491 * 59.99878 * 15 14 13
43 43 H 0.96999 * 119.99503 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1882 -0.1405 -2.4167
6 6 2.6566 -1.1050 -3.2422
7 6 2.7681 -2.2872 -2.5031
8 6 3.2457 -3.6164 -3.0289
9 7 4.6772 -3.7642 -2.7548
10 16 5.3944 -5.2518 -2.8774
11 8 6.7501 -5.0175 -2.5222
12 8 4.5690 -6.1043 -2.0956
13 6 5.2612 -5.6748 -4.6364
14 6 5.8956 -7.0455 -4.8806
15 6 5.7838 -7.4020 -6.3643
16 6 6.4082 -8.7524 -6.6048
17 1 6.8417 -9.3012 -5.7819
18 6 6.4269 -9.2868 -7.8757
19 7 5.8994 -8.6182 -8.8779
20 14 7.2014 -10.9602 -8.1740
21 1 6.4938 -11.9845 -7.3644
22 1 7.0928 -11.3064 -9.6140
23 1 8.6327 -10.9204 -7.7806
24 7 2.3857 -2.0399 -1.2766
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3633 -1.0277 0.0005
28 1 1.8934 -0.5139 0.8900
29 1 1.6766 1.9563 -0.8900
30 1 1.6767 1.9564 0.8899
31 1 3.1299 1.4426 -0.0005
32 1 1.9883 0.8861 -2.6859
33 1 2.8977 -0.9843 -4.2880
34 1 2.6967 -4.4198 -2.5377
35 1 3.0748 -3.6642 -4.1044
36 1 5.2048 -2.9908 -2.5014
37 1 4.2103 -5.7048 -4.9242
38 1 5.7796 -4.9228 -5.2312
39 1 6.9464 -7.0160 -4.5927
40 1 5.3768 -7.7973 -4.2859
41 1 4.7331 -7.4315 -6.6528
42 1 6.3029 -6.6503 -6.9588
43 1 5.9122 -8.9943 -9.7719
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000563654129.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:40
Heat of formation + Delta-G solvation = -42.162313 kcal
Electronic energy + Delta-G solvation = -23425.321742 eV
Core-core repulsion = 19825.788813 eV
Total energy + Delta-G solvation = -3599.532929 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.140 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.23201 -38.20537 -37.29067 -37.02981 -36.43179 -35.75964 -34.13440 -31.36746
-30.80840 -29.62093 -28.22371 -27.14471 -25.59374 -23.57564 -22.39805 -21.24532
-20.82974 -20.33731 -18.71173 -18.51126 -18.05393 -17.42713 -17.13196 -16.48709
-16.31190 -16.14176 -15.62298 -15.26902 -15.14045 -14.68285 -14.46393 -14.39504
-14.06458 -13.77444 -13.59727 -13.47096 -13.21330 -13.18769 -13.12442 -13.03235
-12.94757 -12.75333 -12.70840 -12.62346 -12.34052 -12.13986 -12.08332 -11.70413
-11.58434 -11.35576 -11.10686 -10.54493 -10.45666 -10.30040 -9.51841 -8.20396
-6.30901 -0.74884 0.90579 1.41508 1.43977 1.51823 1.53245 1.59303
2.09613 2.41660 2.78446 3.13000 3.25336 3.43084 3.70807 3.79862
3.92594 3.93657 3.99281 4.10078 4.23871 4.33484 4.44317 4.59385
4.64514 4.69616 4.77282 4.80526 4.83115 4.85739 4.93055 5.01255
5.10641 5.14373 5.17726 5.22650 5.48582 5.66487 5.67370 5.82547
6.02280 6.19082 6.22740 6.76133 6.84548 7.37947 8.90734
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.031164 B = 0.002213 C = 0.002143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.268655 B =12650.633679 C =13059.687024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.143 3.857
3 C -0.156 4.156
4 N -0.366 5.366
5 C 0.060 3.940
6 C -0.272 4.272
7 C 0.048 3.952
8 C 0.190 3.810
9 N -1.105 6.105
10 S 2.631 3.369
11 O -0.993 6.993
12 O -0.992 6.992
13 C -0.604 4.604
14 C -0.108 4.108
15 C 0.031 3.969
16 C -0.553 4.553
17 H 0.059 0.941
18 C 0.002 3.998
19 N -0.929 5.929
20 Si 0.962 3.038
21 H -0.268 1.268
22 H -0.281 1.281
23 H -0.268 1.268
24 N -0.325 5.325
25 H 0.099 0.901
26 H 0.069 0.931
27 H 0.043 0.957
28 H 0.091 0.909
29 H 0.080 0.920
30 H 0.102 0.898
31 H 0.057 0.943
32 H 0.209 0.791
33 H 0.169 0.831
34 H 0.082 0.918
35 H 0.118 0.882
36 H 0.423 0.577
37 H 0.151 0.849
38 H 0.152 0.848
39 H 0.065 0.935
40 H 0.066 0.934
41 H 0.006 0.994
42 H 0.005 0.995
43 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.581 24.994 14.828 31.284
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.042 3.958
3 C -0.214 4.214
4 N -0.150 5.150
5 C -0.086 4.086
6 C -0.301 4.301
7 C -0.118 4.118
8 C 0.063 3.937
9 N -0.866 5.866
10 S 2.727 3.273
11 O -0.983 6.983
12 O -0.982 6.982
13 C -0.735 4.735
14 C -0.147 4.147
15 C -0.007 4.007
16 C -0.591 4.591
17 H 0.077 0.923
18 C -0.196 4.196
19 N -0.568 5.568
20 Si 0.787 3.213
21 H -0.193 1.193
22 H -0.206 1.206
23 H -0.193 1.193
24 N -0.149 5.149
25 H 0.118 0.882
26 H 0.088 0.912
27 H 0.062 0.938
28 H 0.110 0.890
29 H 0.099 0.901
30 H 0.121 0.879
31 H 0.076 0.924
32 H 0.225 0.775
33 H 0.186 0.814
34 H 0.100 0.900
35 H 0.136 0.864
36 H 0.258 0.742
37 H 0.169 0.831
38 H 0.170 0.830
39 H 0.084 0.916
40 H 0.085 0.915
41 H 0.024 0.976
42 H 0.023 0.977
43 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -11.591 23.952 16.651 31.390
hybrid contribution 0.494 -0.225 -1.660 1.747
sum -11.097 23.728 14.991 30.181
Atomic orbital electron populations
1.22199 0.92554 1.02374 1.04491 1.21599 0.95650 0.93849 0.84705
1.22175 1.01756 0.92129 1.05366 1.49206 1.49640 1.06342 1.09765
1.23054 0.99561 1.01307 0.84672 1.21749 1.13888 0.91688 1.02806
1.22244 1.00798 0.96974 0.91785 1.19783 0.79428 0.92658 1.01864
1.55299 1.17093 1.27583 1.86664 1.04199 0.72467 0.72885 0.77733
1.93529 1.36822 1.84588 1.83385 1.93532 1.69624 1.67478 1.67590
1.30462 1.12295 1.07097 1.23666 1.21329 1.00113 0.92804 1.00477
1.18962 0.96069 0.95167 0.90514 1.21726 1.38400 1.04682 0.94298
0.92267 1.25923 0.95935 1.01746 0.95989 1.70062 1.46247 1.39975
1.00558 0.85546 0.79204 0.79431 0.77165 1.19329 1.20614 1.19329
1.77317 1.21493 0.95230 1.20825 0.88203 0.91199 0.93805 0.89048
0.90073 0.87948 0.92356 0.77465 0.81377 0.89961 0.86385 0.74160
0.83051 0.83040 0.91648 0.91542 0.97606 0.97702 0.92655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.33 9.52 71.98 0.69 -0.65 16
2 C 0.14 1.56 3.93 44.99 0.18 1.73 16
3 C -0.16 -0.74 8.84 71.98 0.64 -0.10 16
4 N -0.37 -6.33 3.52 -327.49 -1.15 -7.48 16
5 C 0.06 0.80 10.59 83.54 0.89 1.69 16
6 C -0.27 -4.45 10.74 21.99 0.24 -4.21 16
7 C 0.05 1.05 6.61 43.10 0.29 1.34 16
8 C 0.19 3.95 6.69 85.63 0.57 4.52 16
9 N -1.11 -25.05 5.88 -190.78 -1.12 -26.17 16
10 S 2.63 77.81 5.46 -56.49 -0.31 77.51 16
11 O -0.99 -35.56 18.08 -127.65 -2.31 -37.87 16
12 O -0.99 -36.10 17.50 -127.65 -2.23 -38.33 16
13 C -0.60 -17.64 6.07 71.98 0.44 -17.21 16
14 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16
15 C 0.03 1.60 4.97 29.85 0.15 1.75 16
16 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16
17 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16
18 C 0.00 0.13 5.46 84.65 0.46 0.60 16
19 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16
20 Si 0.96 44.41 29.54 68.60 2.03 46.44 16
21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
24 N -0.32 -8.07 12.58 -47.38 -0.60 -8.66 16
25 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16
26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
27 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16
28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.08 0.17 7.16 -2.39 -0.02 0.15 16
30 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16
31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
32 H 0.21 1.01 7.27 -2.91 -0.02 0.99 16
33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16
34 H 0.08 1.90 7.69 -2.39 -0.02 1.89 16
35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16
36 H 0.42 8.67 8.61 -96.75 -0.83 7.83 16
37 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16
38 H 0.15 3.80 8.14 -2.39 -0.02 3.79 16
39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16
40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16
41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16
42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16
43 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
Total: -1.00 -81.91 375.53 -0.33 -82.25
By element:
Atomic # 1 Polarization: 13.55 SS G_CDS: 0.16 Total: 13.71 kcal
Atomic # 6 Polarization: -50.98 SS G_CDS: 4.92 Total: -46.06 kcal
Atomic # 7 Polarization: -95.05 SS G_CDS: -2.59 Total: -97.64 kcal
Atomic # 8 Polarization: -71.65 SS G_CDS: -4.54 Total: -76.20 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Atomic # 16 Polarization: 77.81 SS G_CDS: -0.31 Total: 77.51 kcal
Total: -81.91 -0.33 -82.25 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000563654129.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.084 kcal
(2) G-P(sol) polarization free energy of solvation -81.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.162 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds