Wall clock time and date at job start Tue Mar 31 2020 12:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39904 * 109.46833 * 2 1 4 4 F 1.39902 * 109.46761 * 240.00434 * 2 1 3 5 5 C 1.52990 * 109.47447 * 120.00394 * 2 1 3 6 6 N 1.46901 * 109.47408 * 180.02562 * 5 2 1 7 7 C 1.46904 * 111.00299 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47017 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47020 * 60.00213 * 8 7 6 10 10 O 1.42900 * 109.47151 * 299.99920 * 8 7 6 11 11 C 1.53002 * 109.47025 * 180.02562 * 8 7 6 12 12 O 1.42895 * 109.46981 * 185.00144 * 11 8 7 13 13 C 1.35678 * 116.99997 * 180.02562 * 12 11 8 14 14 C 1.39305 * 119.81904 * 180.02562 * 13 12 11 15 15 C 1.36438 * 120.18360 * 179.71525 * 14 13 12 16 16 C 1.40829 * 119.81200 * 0.27972 * 15 14 13 17 17 C 1.41223 * 120.18048 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99992 * 335.14278 * 17 16 15 19 19 C 1.39886 * 120.00282 * 155.13982 * 17 16 15 20 20 N 1.30885 * 119.99755 * 342.15824 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 162.15578 * 19 17 16 22 22 H 1.48502 * 109.47092 * 94.65822 * 21 19 17 23 23 H 1.48501 * 109.47092 * 214.65617 * 21 19 17 24 24 H 1.48497 * 109.47284 * 334.65885 * 21 19 17 25 25 C 1.40828 * 119.64615 * 359.97438 * 16 15 14 26 26 C 1.36442 * 119.80860 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46789 * 299.99644 * 1 2 3 28 28 H 1.08996 * 109.47419 * 59.99265 * 1 2 3 29 29 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47386 * 59.99731 * 5 2 1 31 31 H 1.09003 * 109.47095 * 299.99774 * 5 2 1 32 32 H 1.00900 * 110.99885 * 56.04176 * 6 5 2 33 33 H 1.09007 * 109.46523 * 59.99766 * 7 6 5 34 34 H 1.08998 * 109.47110 * 299.99887 * 7 6 5 35 35 H 0.96699 * 114.00658 * 300.00074 * 10 8 7 36 36 H 1.08999 * 109.46877 * 65.00196 * 11 8 7 37 37 H 1.08996 * 109.46840 * 305.00499 * 11 8 7 38 38 H 1.07998 * 119.90702 * 359.97438 * 14 13 12 39 39 H 1.08003 * 120.09720 * 180.29575 * 15 14 13 40 40 H 0.96996 * 120.00147 * 179.97438 * 20 19 17 41 41 H 1.07994 * 120.10143 * 180.02562 * 25 16 15 42 42 H 1.07998 * 119.91122 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 7 3.5091 -0.7207 1.2494 7 6 4.0356 -1.4060 2.4374 8 6 5.5650 -1.3855 2.4019 9 1 5.9145 -0.3531 2.3933 10 8 6.0232 -2.0534 1.2246 11 6 6.1134 -2.0998 3.6389 12 8 7.5371 -1.9799 3.6661 13 6 8.1846 -2.5631 4.7060 14 6 9.5727 -2.4819 4.7910 15 6 10.2309 -3.0606 5.8366 16 6 9.5035 -3.7466 6.8284 17 6 10.1769 -4.3481 7.9143 18 1 11.2107 -4.6435 7.8120 19 6 9.5049 -4.5613 9.1226 20 7 8.3978 -3.9120 9.3790 21 14 10.1877 -5.7726 10.3699 22 1 11.0201 -5.0455 11.3617 23 1 9.0654 -6.4502 11.0675 24 1 11.0204 -6.7851 9.6723 25 6 8.1009 -3.8287 6.7321 26 6 7.4579 -3.2435 5.6807 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7489 1.2491 31 1 1.6768 -0.2075 2.1391 32 1 3.8703 0.2192 1.1846 33 1 3.6864 -2.4386 2.4457 34 1 3.6858 -0.8968 3.3354 35 1 5.7488 -2.9787 1.1652 36 1 5.8382 -3.1538 3.6016 37 1 5.6933 -1.6461 4.5364 38 1 10.1289 -1.9557 4.0294 39 1 11.3067 -2.9927 5.9037 40 1 7.9316 -4.0601 10.2167 41 1 7.5358 -4.3525 7.4888 42 1 6.3823 -3.3050 5.6054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564860543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:08 Heat of formation + Delta-G solvation = -176.663692 kcal Electronic energy + Delta-G solvation = -25255.820094 eV Core-core repulsion = 21064.321610 eV Total energy + Delta-G solvation = -4191.498484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.20160 -47.19888 -39.12005 -37.88519 -36.34362 -35.56160 -33.35063 -32.55035 -30.45631 -29.64088 -29.02127 -26.94629 -24.89144 -23.89986 -22.26748 -21.83467 -20.91688 -20.36174 -18.00260 -17.54225 -17.35427 -16.91744 -16.71396 -16.45479 -16.17950 -15.26244 -15.20858 -14.94807 -14.20436 -14.14864 -14.03465 -13.94077 -13.60342 -13.52496 -13.39039 -13.07926 -12.93704 -12.72719 -12.47120 -12.41041 -12.24882 -12.01253 -11.75887 -11.46036 -11.26203 -11.13462 -11.03971 -10.83600 -10.59362 -10.01957 -9.87517 -9.80434 -9.38157 -9.02787 -8.89571 -7.67317 -7.02641 -6.74826 -4.26736 2.75069 2.94810 3.06569 3.10948 3.16963 3.20113 3.49302 3.75844 3.93547 3.97745 4.02180 4.34063 4.49907 4.60139 4.70983 4.80987 4.90588 4.92635 5.08073 5.16100 5.23730 5.30240 5.31812 5.38835 5.62165 5.65863 5.99176 6.07897 6.27179 6.35813 6.70111 6.85150 6.87767 7.05125 7.26239 7.39277 7.54385 7.75581 7.88478 7.98646 8.13865 8.42941 8.63388 8.88590 8.97584 10.20112 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030896 B = 0.002007 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.050659 B =13950.695696 C =14527.566723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.291 3.709 3 F -0.203 7.203 4 F -0.190 7.190 5 C 0.017 3.983 6 N -0.675 5.675 7 C 0.031 3.969 8 C 0.115 3.885 9 H 0.104 0.896 10 O -0.539 6.539 11 C 0.039 3.961 12 O -0.318 6.318 13 C -0.010 4.010 14 C -0.112 4.112 15 C -0.195 4.195 16 C 0.087 3.913 17 C -0.462 4.462 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.801 5.801 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.134 4.134 26 C -0.175 4.175 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.351 0.649 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.372 0.628 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.279 0.721 41 H 0.120 0.880 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 4.931 -11.931 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.254 3.746 3 F -0.184 7.184 4 F -0.171 7.171 5 C -0.113 4.113 6 N -0.307 5.307 7 C -0.099 4.099 8 C 0.055 3.945 9 H 0.122 0.878 10 O -0.343 6.343 11 C -0.038 4.038 12 O -0.233 6.233 13 C -0.053 4.053 14 C -0.131 4.131 15 C -0.215 4.215 16 C 0.084 3.916 17 C -0.493 4.493 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.427 5.427 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.154 4.154 26 C -0.194 4.194 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.218 0.782 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.719 5.114 -12.439 21.457 hybrid contribution -0.419 -0.380 1.715 1.806 sum -17.138 4.733 -10.723 20.764 Atomic orbital electron populations 1.22768 0.91485 1.05600 1.05485 1.21132 0.93371 0.75525 0.84559 1.93009 1.90588 1.37900 1.96916 1.93051 1.90520 1.80691 1.52847 1.22997 0.90552 1.02537 0.95213 1.60237 1.04827 1.24217 1.41392 1.22603 0.95875 1.00322 0.91054 1.21825 0.90325 0.97987 0.84400 0.87833 1.86639 1.77954 1.28315 1.41371 1.23087 0.82899 0.99922 0.97897 1.85865 1.17562 1.74358 1.45563 1.18598 0.91624 1.04598 0.90483 1.19628 0.90688 1.03404 0.99369 1.20612 0.98221 1.04623 0.98022 1.17603 0.91903 0.90069 0.91987 1.19468 0.98849 1.35274 0.95660 0.90476 1.25879 0.94394 0.94767 0.99164 1.69842 1.15584 1.33463 1.23859 0.86332 0.79430 0.81086 0.80056 1.19644 1.20147 1.18467 1.20926 0.95175 1.02160 0.97113 1.20590 0.97449 1.04023 0.97310 0.89302 0.89743 0.89076 0.87902 0.92147 0.83016 0.89986 0.93578 0.78164 0.92781 0.92443 0.88430 0.88163 0.91048 0.86173 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.90 9.38 37.16 0.35 -0.55 16 2 C 0.29 2.31 2.24 -26.74 -0.06 2.25 16 3 F -0.20 -1.99 16.53 2.25 0.04 -1.95 16 4 F -0.19 -2.05 16.98 2.25 0.04 -2.02 16 5 C 0.02 0.12 5.23 -3.83 -0.02 0.10 16 6 N -0.67 -6.45 6.29 -113.78 -0.72 -7.17 16 7 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 8 C 0.11 1.43 3.46 -26.73 -0.09 1.34 16 9 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 10 O -0.54 -7.54 13.17 -40.11 -0.53 -8.07 16 11 C 0.04 0.60 4.36 37.16 0.16 0.76 16 12 O -0.32 -6.51 10.09 -23.62 -0.24 -6.75 16 13 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 14 C -0.11 -2.65 9.92 -39.83 -0.40 -3.04 16 15 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 16 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 17 C -0.46 -12.26 9.04 -37.83 -0.34 -12.60 16 18 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 19 C 0.07 1.86 5.13 -17.34 -0.09 1.78 16 20 N -0.80 -20.63 10.97 55.54 0.61 -20.02 16 21 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 25 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 26 C -0.17 -4.07 8.97 -39.83 -0.36 -4.42 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.35 3.47 8.25 -39.29 -0.32 3.15 16 33 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.37 4.03 9.05 45.56 0.41 4.45 16 36 H 0.05 0.78 7.63 -51.93 -0.40 0.38 16 37 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.12 3.18 6.18 -52.49 -0.32 2.85 16 42 H 0.09 1.88 6.27 -52.49 -0.33 1.55 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -30.95 361.19 -7.96 -38.92 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.14 Total: 9.96 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.44 Total: -21.91 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: -0.11 Total: -27.18 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.77 Total: -14.82 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.95 -7.96 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564860543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.746 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds