Wall clock time and date at job start Tue Mar 31 2020 12:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39904 * 109.46833 * 2 1 4 4 F 1.39902 * 109.46761 * 240.00434 * 2 1 3 5 5 C 1.52990 * 109.47447 * 120.00394 * 2 1 3 6 6 N 1.46901 * 109.47408 * 180.02562 * 5 2 1 7 7 C 1.46904 * 111.00299 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47017 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47020 * 60.00213 * 8 7 6 10 10 O 1.42900 * 109.47151 * 299.99920 * 8 7 6 11 11 C 1.53002 * 109.47025 * 180.02562 * 8 7 6 12 12 O 1.42895 * 109.46981 * 185.00144 * 11 8 7 13 13 C 1.35678 * 116.99997 * 180.02562 * 12 11 8 14 14 C 1.39305 * 119.81904 * 180.02562 * 13 12 11 15 15 C 1.36438 * 120.18360 * 179.71525 * 14 13 12 16 16 C 1.40829 * 119.81200 * 0.27972 * 15 14 13 17 17 C 1.41223 * 120.18048 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99992 * 335.14278 * 17 16 15 19 19 C 1.39886 * 120.00282 * 155.13982 * 17 16 15 20 20 N 1.30885 * 119.99755 * 342.15824 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 162.15578 * 19 17 16 22 22 H 1.48502 * 109.47092 * 94.65822 * 21 19 17 23 23 H 1.48501 * 109.47092 * 214.65617 * 21 19 17 24 24 H 1.48497 * 109.47284 * 334.65885 * 21 19 17 25 25 C 1.40828 * 119.64615 * 359.97438 * 16 15 14 26 26 C 1.36442 * 119.80860 * 359.97438 * 25 16 15 27 27 H 1.09003 * 109.46789 * 299.99644 * 1 2 3 28 28 H 1.08996 * 109.47419 * 59.99265 * 1 2 3 29 29 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47386 * 59.99731 * 5 2 1 31 31 H 1.09003 * 109.47095 * 299.99774 * 5 2 1 32 32 H 1.00900 * 110.99885 * 56.04176 * 6 5 2 33 33 H 1.09007 * 109.46523 * 59.99766 * 7 6 5 34 34 H 1.08998 * 109.47110 * 299.99887 * 7 6 5 35 35 H 0.96699 * 114.00658 * 300.00074 * 10 8 7 36 36 H 1.08999 * 109.46877 * 65.00196 * 11 8 7 37 37 H 1.08996 * 109.46840 * 305.00499 * 11 8 7 38 38 H 1.07998 * 119.90702 * 359.97438 * 14 13 12 39 39 H 1.08003 * 120.09720 * 180.29575 * 15 14 13 40 40 H 0.96996 * 120.00147 * 179.97438 * 20 19 17 41 41 H 1.07994 * 120.10143 * 180.02562 * 25 16 15 42 42 H 1.07998 * 119.91122 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7213 1.2491 6 7 3.5091 -0.7207 1.2494 7 6 4.0356 -1.4060 2.4374 8 6 5.5650 -1.3855 2.4019 9 1 5.9145 -0.3531 2.3933 10 8 6.0232 -2.0534 1.2246 11 6 6.1134 -2.0998 3.6389 12 8 7.5371 -1.9799 3.6661 13 6 8.1846 -2.5631 4.7060 14 6 9.5727 -2.4819 4.7910 15 6 10.2309 -3.0606 5.8366 16 6 9.5035 -3.7466 6.8284 17 6 10.1769 -4.3481 7.9143 18 1 11.2107 -4.6435 7.8120 19 6 9.5049 -4.5613 9.1226 20 7 8.3978 -3.9120 9.3790 21 14 10.1877 -5.7726 10.3699 22 1 11.0201 -5.0455 11.3617 23 1 9.0654 -6.4502 11.0675 24 1 11.0204 -6.7851 9.6723 25 6 8.1009 -3.8287 6.7321 26 6 7.4579 -3.2435 5.6807 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7489 1.2491 31 1 1.6768 -0.2075 2.1391 32 1 3.8703 0.2192 1.1846 33 1 3.6864 -2.4386 2.4457 34 1 3.6858 -0.8968 3.3354 35 1 5.7488 -2.9787 1.1652 36 1 5.8382 -3.1538 3.6016 37 1 5.6933 -1.6461 4.5364 38 1 10.1289 -1.9557 4.0294 39 1 11.3067 -2.9927 5.9037 40 1 7.9316 -4.0601 10.2167 41 1 7.5358 -4.3525 7.4888 42 1 6.3823 -3.3050 5.6054 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564860543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:07 Heat of formation + Delta-G solvation = -197.848847 kcal Electronic energy + Delta-G solvation = -25256.738751 eV Core-core repulsion = 21064.321610 eV Total energy + Delta-G solvation = -4192.417141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.87396 -47.90140 -40.66152 -39.11379 -37.85299 -36.47916 -35.20345 -33.15569 -31.69785 -31.46616 -30.62259 -27.84782 -26.58027 -24.90957 -23.32162 -22.77153 -22.46374 -21.97973 -19.27650 -18.77752 -18.59796 -18.09415 -17.62165 -17.39541 -17.19851 -16.84942 -16.17525 -15.99096 -15.75592 -15.42981 -15.24854 -14.90936 -14.74620 -14.36538 -14.27786 -14.18455 -14.03785 -13.78551 -13.54939 -13.47955 -13.30672 -13.19585 -13.00097 -12.92281 -12.74800 -12.72062 -12.30866 -11.94882 -11.84931 -11.69362 -11.58607 -11.22705 -10.93540 -10.86487 -9.57554 -9.55494 -8.91315 -8.60749 -6.22848 0.93213 1.03727 1.39787 1.49283 1.55668 2.22794 2.29424 2.71822 2.82981 3.03393 3.26555 3.47791 3.51657 3.69792 3.78186 3.86601 3.97661 4.05219 4.28743 4.30322 4.36375 4.39788 4.46115 4.48553 4.60280 4.65179 4.84303 4.87698 4.97908 5.02008 5.03036 5.14872 5.36504 5.51593 5.65360 5.72670 5.96308 6.05759 6.13002 6.23435 6.55732 6.78423 6.87163 6.94854 7.09892 8.36349 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030896 B = 0.002007 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.050659 B =13950.695696 C =14527.566723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.278 3.722 3 F -0.218 7.218 4 F -0.211 7.211 5 C 0.019 3.981 6 N -0.692 5.692 7 C 0.042 3.958 8 C 0.122 3.878 9 H 0.094 0.906 10 O -0.560 6.560 11 C 0.031 3.969 12 O -0.330 6.330 13 C -0.001 4.001 14 C -0.124 4.124 15 C -0.205 4.205 16 C 0.053 3.947 17 C -0.499 4.499 18 H 0.075 0.925 19 C 0.034 3.966 20 N -0.831 5.831 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.154 4.154 26 C -0.174 4.174 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.345 0.655 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.384 0.616 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.108 0.892 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 4.578 -11.747 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.242 3.758 3 F -0.199 7.199 4 F -0.192 7.192 5 C -0.111 4.111 6 N -0.324 5.324 7 C -0.087 4.087 8 C 0.063 3.937 9 H 0.112 0.888 10 O -0.366 6.366 11 C -0.045 4.045 12 O -0.246 6.246 13 C -0.045 4.045 14 C -0.143 4.143 15 C -0.225 4.225 16 C 0.051 3.949 17 C -0.529 4.529 18 H 0.093 0.907 19 C -0.180 4.180 20 N -0.458 5.458 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.174 4.174 26 C -0.193 4.193 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.404 4.766 -12.276 22.630 hybrid contribution 0.024 -0.177 1.508 1.519 sum -18.380 4.590 -10.768 21.791 Atomic orbital electron populations 1.22781 0.88719 1.06919 1.06293 1.21671 0.95334 0.74709 0.84091 1.92977 1.90983 1.39012 1.96939 1.93006 1.90994 1.81083 1.54167 1.23097 0.88986 1.03574 0.95460 1.60224 1.06511 1.24010 1.41615 1.22460 0.93150 1.01395 0.91668 1.21781 0.92441 0.96858 0.82670 0.88809 1.86605 1.78597 1.29499 1.41893 1.23461 0.80032 1.01285 0.99738 1.85863 1.20579 1.73831 1.44342 1.18712 0.91785 1.03335 0.90630 1.19903 0.91513 1.03383 0.99501 1.20795 0.98821 1.04665 0.98200 1.17971 0.92781 0.91185 0.92976 1.19708 0.99242 1.37130 0.96811 0.90705 1.26717 0.94607 0.95968 1.00707 1.69884 1.16667 1.34381 1.24868 0.85208 0.78902 0.78405 0.77269 1.18903 1.19003 1.18386 1.20919 0.95069 1.03408 0.97975 1.20813 0.98966 1.03131 0.96400 0.87608 0.89864 0.87506 0.86483 0.90191 0.83609 0.88595 0.92153 0.76737 0.91575 0.91589 0.86597 0.87350 0.90227 0.87407 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 9.38 71.98 0.68 -0.64 16 2 C 0.28 3.99 2.24 30.59 0.07 4.06 16 3 F -0.22 -4.10 16.53 44.97 0.74 -3.35 16 4 F -0.21 -4.41 16.98 44.97 0.76 -3.65 16 5 C 0.02 0.22 5.23 86.30 0.45 0.67 16 6 N -0.69 -11.94 6.29 -513.89 -3.23 -15.17 16 7 C 0.04 0.68 5.35 86.30 0.46 1.14 16 8 C 0.12 2.85 3.46 30.59 0.11 2.96 16 9 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 10 O -0.56 -14.90 13.17 -144.31 -1.90 -16.80 16 11 C 0.03 0.89 4.36 71.98 0.31 1.20 16 12 O -0.33 -13.08 10.09 -85.29 -0.86 -13.94 16 13 C 0.00 -0.03 6.71 22.79 0.15 0.12 16 14 C -0.12 -5.84 9.92 22.11 0.22 -5.62 16 15 C -0.21 -10.35 9.74 22.48 0.22 -10.13 16 16 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 17 C -0.50 -27.08 9.04 23.40 0.21 -26.87 16 18 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 19 C 0.03 1.70 5.13 85.23 0.44 2.14 16 20 N -0.83 -43.23 10.97 21.82 0.24 -42.99 16 21 Si 0.98 38.11 29.60 68.60 2.03 40.14 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 25 C -0.15 -8.08 8.64 22.48 0.19 -7.88 16 26 C -0.17 -8.00 8.97 22.11 0.20 -7.80 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.35 6.46 8.25 -89.69 -0.74 5.72 16 33 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.38 7.72 9.05 -74.06 -0.67 7.05 16 36 H 0.07 1.74 7.63 -2.39 -0.02 1.72 16 37 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 38 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 40 H 0.29 13.43 8.30 -92.71 -0.77 12.67 16 41 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 42 H 0.12 4.71 6.27 -2.91 -0.02 4.69 16 Total: -1.00 -67.47 361.19 1.02 -66.45 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.36 Total: 33.19 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 3.59 Total: -43.87 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -2.99 Total: -58.16 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -2.76 Total: -30.75 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 1.51 Total: -7.00 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -67.47 1.02 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564860543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.398 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds