Wall clock time and date at job start Tue Mar 31 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 H 1.08997 * 109.47176 * 303.08390 * 3 2 1 5 5 N 1.46506 * 109.46865 * 63.08191 * 3 2 1 6 6 C 1.34773 * 119.99606 * 203.10479 * 5 3 2 7 7 O 1.21660 * 120.00479 * 4.76713 * 6 5 3 8 8 C 1.46889 * 119.99484 * 184.76608 * 6 5 3 9 9 C 1.36125 * 125.43558 * 173.95694 * 8 6 5 10 10 C 1.41705 * 107.74797 * 180.27814 * 9 8 6 11 11 C 1.40025 * 133.34868 * 179.77658 * 10 9 8 12 12 C 1.36580 * 119.82762 * 179.97438 * 11 10 9 13 13 C 1.38858 * 120.59965 * 359.95697 * 12 11 10 14 14 C 1.37842 * 120.63436 * 0.02562 * 13 12 11 15 15 C 1.39087 * 119.81282 * 0.02562 * 14 13 12 16 16 N 1.37840 * 133.16211 * 180.02562 * 15 14 13 17 17 C 1.36893 * 125.61779 * 359.96366 * 16 15 14 18 18 H 1.07995 * 119.99716 * 137.27996 * 17 16 15 19 19 C 1.39008 * 120.00100 * 317.28010 * 17 16 15 20 20 N 1.31344 * 120.00433 * 334.74051 * 19 17 16 21 21 Si 1.86802 * 119.99666 * 154.73881 * 19 17 16 22 22 H 1.48502 * 109.47138 * 184.99744 * 21 19 17 23 23 H 1.48497 * 109.47139 * 304.99509 * 21 19 17 24 24 H 1.48500 * 109.47346 * 64.99768 * 21 19 17 25 25 C 1.50698 * 109.47413 * 183.08128 * 3 2 1 26 26 N 1.34777 * 119.99629 * 60.00040 * 25 3 2 27 27 O 1.21276 * 120.00286 * 240.00418 * 25 3 2 28 28 H 1.09003 * 109.47459 * 59.99787 * 1 2 3 29 29 H 1.09004 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47251 * 299.99479 * 1 2 3 31 31 H 1.09006 * 109.47251 * 240.00521 * 2 1 3 32 32 H 1.08993 * 109.47593 * 120.00284 * 2 1 3 33 33 H 0.96999 * 119.99691 * 23.11198 * 5 3 2 34 34 H 1.07998 * 126.13108 * 0.02562 * 9 8 6 35 35 H 1.07997 * 120.08357 * 0.02562 * 11 10 9 36 36 H 1.07994 * 119.69669 * 179.97438 * 12 11 10 37 37 H 1.07993 * 119.68196 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.09385 * 179.97438 * 14 13 12 39 39 H 0.96998 * 119.99943 * 356.45811 * 20 19 17 40 40 H 0.96996 * 120.00139 * 0.02562 * 26 25 3 41 41 H 0.97004 * 120.00000 * 179.97438 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6322 1.9721 -0.8610 5 7 1.6131 2.1113 1.2316 6 6 1.5219 3.4554 1.2717 7 8 1.7095 4.1082 0.2623 8 6 1.1959 4.1320 2.5340 9 6 1.1896 5.4793 2.7286 10 6 0.8308 5.7191 4.0784 11 6 0.6688 6.8846 4.8373 12 6 0.3065 6.7948 6.1512 13 6 0.0958 5.5566 6.7433 14 6 0.2488 4.3954 6.0166 15 6 0.6182 4.4614 4.6773 16 7 0.8438 3.5026 3.7130 17 6 0.7406 2.1497 3.8945 18 1 0.2637 1.5388 3.1423 19 6 1.2495 1.5621 5.0469 20 7 2.2248 2.1452 5.7057 21 14 0.5463 -0.0567 5.6587 22 1 1.1711 -0.4078 6.9593 23 1 -0.9221 0.0766 5.8349 24 1 0.8310 -1.1259 4.6682 25 6 3.5450 1.4433 -0.0764 26 7 4.1665 0.8782 -1.1304 27 8 4.1969 1.9523 0.8106 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.3963 1.5868 2.0182 34 1 1.4209 6.2307 1.9882 35 1 0.8290 7.8520 4.3847 36 1 0.1825 7.6951 6.7346 37 1 -0.1907 5.5029 7.7831 38 1 0.0831 3.4369 6.4860 39 1 2.6248 2.9587 5.3605 40 1 3.6450 0.4714 -1.8399 41 1 5.1352 0.8790 -1.1798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589818864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:45 Heat of formation + Delta-G solvation = -48.131852 kcal Electronic energy + Delta-G solvation = -26890.440722 eV Core-core repulsion = 23155.204983 eV Total energy + Delta-G solvation = -3735.235739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46129 -41.23061 -39.71946 -37.77826 -36.84636 -35.56959 -34.80408 -33.17491 -32.43543 -30.77851 -29.93277 -28.30248 -26.62744 -24.81109 -23.30536 -22.80589 -22.12010 -21.34598 -21.20279 -20.21316 -18.72348 -18.39700 -17.97160 -17.49173 -16.86312 -16.72503 -16.31683 -15.79160 -15.71888 -15.58508 -15.42094 -15.04761 -14.90586 -14.76678 -14.64074 -14.20535 -13.92159 -13.60673 -13.42000 -13.08427 -12.78714 -12.49755 -12.28080 -12.18016 -12.14761 -11.97223 -11.94835 -11.58563 -11.40098 -11.25472 -10.92216 -10.74119 -10.59897 -10.14974 -9.39544 -8.87313 -8.57066 -6.57723 -0.02673 0.94440 1.22537 1.47348 1.51830 1.55180 1.75948 2.01998 2.20398 2.38131 2.57246 2.68684 2.88138 3.17897 3.62155 3.86722 3.93317 3.99520 4.09704 4.31380 4.32735 4.41274 4.50843 4.59725 4.67755 4.74661 4.84810 4.98734 5.06173 5.08100 5.13837 5.24146 5.33409 5.34408 5.42246 5.63617 5.71929 5.81398 5.83316 6.01787 6.04866 6.37823 6.40954 6.46217 6.83111 7.13703 7.28221 7.29436 8.08840 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.005763 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.071532 B = 4857.684307 C = 6186.006111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.117 3.883 4 H 0.119 0.881 5 N -0.698 5.698 6 C 0.598 3.402 7 O -0.581 6.581 8 C -0.050 4.050 9 C -0.180 4.180 10 C -0.150 4.150 11 C -0.085 4.085 12 C -0.150 4.150 13 C -0.121 4.121 14 C -0.112 4.112 15 C 0.045 3.955 16 N -0.275 5.275 17 C -0.467 4.467 18 H 0.111 0.889 19 C 0.000 4.000 20 N -0.833 5.833 21 Si 1.116 2.884 22 H -0.278 1.278 23 H -0.259 1.259 24 H -0.247 1.247 25 C 0.497 3.503 26 N -0.826 5.826 27 O -0.590 6.590 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.417 0.583 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.265 0.735 40 H 0.421 0.579 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 -7.020 -8.266 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.009 3.991 4 H 0.137 0.863 5 N -0.356 5.356 6 C 0.387 3.613 7 O -0.462 6.462 8 C -0.164 4.164 9 C -0.208 4.208 10 C -0.155 4.155 11 C -0.104 4.104 12 C -0.169 4.169 13 C -0.141 4.141 14 C -0.132 4.132 15 C -0.069 4.069 16 N 0.060 4.940 17 C -0.593 4.593 18 H 0.128 0.872 19 C -0.212 4.212 20 N -0.458 5.458 21 Si 0.932 3.068 22 H -0.202 1.202 23 H -0.184 1.184 24 H -0.171 1.171 25 C 0.280 3.720 26 N -0.392 5.392 27 O -0.469 6.469 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.263 0.737 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.170 -7.757 -7.120 10.996 hybrid contribution 0.535 1.098 -1.238 1.739 sum -2.634 -6.659 -8.359 11.007 Atomic orbital electron populations 1.21791 0.93761 1.03400 1.02008 1.21836 0.97947 0.90418 1.05298 1.21280 0.90159 0.97708 0.89981 0.86320 1.46386 1.66857 1.06075 1.16236 1.17198 0.75363 0.82675 0.86078 1.90644 1.54149 1.66491 1.34943 1.20596 1.12941 0.93457 0.89413 1.20639 1.10676 0.93405 0.96058 1.18392 1.09231 0.93797 0.94033 1.20553 0.99420 0.96084 0.94313 1.20821 1.03385 0.97999 0.94712 1.21084 1.01567 0.91422 1.00012 1.20221 1.03021 0.99051 0.90935 1.18886 1.06675 0.88400 0.92914 1.40274 1.42700 1.05069 1.05989 1.20676 1.45633 0.81036 1.11972 0.87186 1.28306 0.92218 1.07723 0.92906 1.70738 1.16406 1.18092 1.40581 0.82994 0.76589 0.69813 0.77430 1.20244 1.18351 1.17086 1.21558 0.91888 0.76673 0.81835 1.43542 1.11725 1.60424 1.23465 1.90782 1.68403 1.46723 1.40970 0.91375 0.89525 0.94695 0.85568 0.91391 0.73714 0.84153 0.84506 0.82961 0.83776 0.88023 0.92443 0.74680 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.78 71.98 0.70 -2.31 16 2 C -0.12 -2.38 5.40 30.59 0.17 -2.22 16 3 C 0.12 3.60 2.41 44.24 0.11 3.70 16 4 H 0.12 3.44 7.57 -2.39 -0.02 3.42 16 5 N -0.70 -28.99 3.98 -449.88 -1.79 -30.79 16 6 C 0.60 29.52 7.50 86.51 0.65 30.17 16 7 O -0.58 -29.76 16.51 -4.22 -0.07 -29.83 16 8 C -0.05 -2.62 6.77 39.91 0.27 -2.35 16 9 C -0.18 -9.09 10.55 22.63 0.24 -8.85 16 10 C -0.15 -7.27 6.16 -21.33 -0.13 -7.40 16 11 C -0.09 -3.36 10.06 22.32 0.22 -3.13 16 12 C -0.15 -5.27 9.97 22.03 0.22 -5.05 16 13 C -0.12 -4.62 10.02 22.32 0.22 -4.39 16 14 C -0.11 -5.27 8.93 22.38 0.20 -5.07 16 15 C 0.05 2.33 5.60 39.06 0.22 2.55 16 16 N -0.28 -14.60 2.52 -331.35 -0.84 -15.44 16 17 C -0.47 -23.43 7.69 84.09 0.65 -22.78 16 18 H 0.11 5.11 6.35 -2.91 -0.02 5.09 16 19 C 0.00 0.00 4.14 84.95 0.35 0.35 16 20 N -0.83 -45.67 12.48 21.67 0.27 -45.40 16 21 Si 1.12 40.99 29.99 68.60 2.06 43.05 16 22 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 24 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 25 C 0.50 16.45 7.44 87.66 0.65 17.10 16 26 N -0.83 -15.98 8.75 -173.54 -1.52 -17.50 16 27 O -0.59 -27.57 17.09 -3.02 -0.05 -27.63 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.03 0.89 7.61 -2.38 -0.02 0.88 16 31 H 0.13 1.39 7.48 -2.38 -0.02 1.37 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 17.89 4.26 -92.71 -0.39 17.49 16 34 H 0.14 6.60 8.06 -2.91 -0.02 6.57 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 38 H 0.10 4.94 7.01 -2.91 -0.02 4.92 16 39 H 0.27 15.98 7.50 -92.71 -0.70 15.29 16 40 H 0.42 4.28 8.21 -92.71 -0.76 3.52 16 41 H 0.41 7.15 8.93 -92.71 -0.83 6.32 16 Total: -1.00 -78.63 346.65 2.00 -76.63 By element: Atomic # 1 Polarization: 57.39 SS G_CDS: -0.80 Total: 56.58 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.74 Total: -9.67 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -3.87 Total: -109.13 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.12 Total: -57.45 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.06 Total: 43.05 kcal Total: -78.63 2.00 -76.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589818864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.500 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds