Wall clock time and date at job start Tue Mar 31 2020 11:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 H 1.08999 * 109.47184 * 55.00339 * 3 2 1 5 5 C 1.50705 * 109.46800 * 174.99896 * 3 2 1 6 6 H 1.08000 * 119.99693 * 120.00694 * 5 3 2 7 7 C 1.37872 * 120.00100 * 300.00015 * 5 3 2 8 8 N 1.31523 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47305 * 119.99604 * 9 7 5 12 12 H 1.48501 * 109.47168 * 239.99814 * 9 7 5 13 13 N 1.46501 * 109.47219 * 294.99650 * 3 2 1 14 14 C 1.34774 * 119.99648 * 85.00082 * 13 3 2 15 15 O 1.21582 * 120.00094 * 359.97438 * 14 13 3 16 16 C 1.47642 * 120.00092 * 179.97438 * 14 13 3 17 17 C 1.39712 * 120.08158 * 179.97438 * 16 14 13 18 18 C 1.37715 * 119.92060 * 179.97438 * 17 16 14 19 19 C 1.39047 * 120.07812 * 0.02562 * 18 17 16 20 20 N 1.39830 * 119.92205 * 179.97438 * 19 18 17 21 21 C 1.37749 * 126.52097 * 310.02881 * 20 19 18 22 22 C 1.34402 * 106.90318 * 179.97438 * 21 20 19 23 23 N 1.34403 * 108.34670 * 359.97438 * 22 21 20 24 24 C 1.30994 * 109.37136 * 359.76018 * 23 22 21 25 25 O 1.35489 * 125.78717 * 180.26163 * 24 23 22 26 26 C 1.39059 * 120.16254 * 0.02562 * 19 18 17 27 27 C 1.37707 * 120.07562 * 359.97438 * 26 19 18 28 28 H 1.09005 * 109.46748 * 60.00242 * 1 2 3 29 29 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47387 * 299.99893 * 1 2 3 31 31 H 1.09004 * 109.47755 * 240.00103 * 2 1 3 32 32 H 1.08996 * 109.47275 * 120.00001 * 2 1 3 33 33 H 0.96994 * 119.99669 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00069 * 264.99946 * 13 3 2 35 35 H 1.08001 * 120.04210 * 359.96219 * 17 16 14 36 36 H 1.08001 * 119.96216 * 179.72275 * 18 17 16 37 37 H 1.07999 * 126.54912 * 359.97365 * 21 20 19 38 38 H 1.07995 * 125.82433 * 179.97438 * 22 21 20 39 39 H 0.96705 * 113.99661 * 270.14203 * 25 24 23 40 40 H 1.07996 * 119.96076 * 179.97438 * 26 19 18 41 41 H 1.08003 * 120.03658 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.5987 1.5463 0.1943 11 1 6.3989 1.6168 2.6102 12 1 6.4970 -0.5174 1.4631 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6318 -0.4321 16 6 0.0447 3.3250 -2.6283 17 6 -1.2170 3.9127 -2.7497 18 6 -1.5775 4.5284 -3.9276 19 6 -0.6877 4.5652 -4.9955 20 7 -1.0574 5.1908 -6.1901 21 6 -2.2221 4.9859 -6.8966 22 6 -2.1706 5.7858 -7.9754 23 7 -1.0125 6.4670 -7.9422 24 6 -0.3371 6.1239 -6.8735 25 8 0.8738 6.6117 -6.5109 26 6 0.5685 3.9804 -4.8787 27 6 0.9358 3.3629 -3.7039 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0618 2.9494 34 1 2.2720 2.1232 -1.9978 35 1 -1.9088 3.8839 -1.9209 36 1 -2.5543 4.9790 -4.0237 37 1 -3.0235 4.3114 -6.6337 38 1 -2.9302 5.8672 -8.7388 39 1 1.6215 6.1107 -6.8646 40 1 1.2568 4.0105 -5.7103 41 1 1.9117 2.9093 -3.6137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593604619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:10 Heat of formation + Delta-G solvation = 20.578946 kcal Electronic energy + Delta-G solvation = -25308.934222 eV Core-core repulsion = 21576.678007 eV Total energy + Delta-G solvation = -3732.256215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.59978 -39.98996 -38.33498 -37.61190 -35.21953 -34.32806 -32.59766 -31.48023 -31.03651 -29.74884 -28.95695 -27.04000 -24.41612 -23.35275 -22.91046 -21.72939 -21.55983 -20.60800 -19.56702 -19.17848 -18.09105 -17.49585 -16.26259 -15.96937 -15.80107 -15.19091 -15.08935 -14.86415 -14.66656 -14.43591 -14.14199 -13.88343 -13.85335 -13.36739 -13.04713 -12.78783 -12.55691 -12.19687 -12.07744 -11.60868 -11.49600 -11.32908 -11.03479 -10.92041 -10.62263 -10.38561 -10.34623 -10.26577 -9.71825 -9.37648 -9.27897 -9.12557 -8.98329 -8.68495 -8.58301 -7.95382 -6.19834 -4.29767 0.39711 1.02704 1.56068 2.06710 2.61904 2.95325 3.18718 3.27027 3.28938 3.50804 3.85916 3.92284 4.29492 4.41273 4.46069 4.49646 4.87989 4.97769 5.05491 5.11706 5.18049 5.25842 5.29643 5.59671 5.61610 5.88728 5.96993 6.16266 6.20193 6.29968 6.32000 6.37941 6.56449 6.58095 6.95829 7.11162 7.25325 7.30130 7.31893 7.53039 7.55896 7.63296 7.80706 8.09267 8.50854 8.67404 8.95453 9.37649 10.85536 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002823 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.831303 B = 9916.655313 C =10855.406580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.698 5.698 14 C 0.539 3.461 15 O -0.540 6.540 16 C -0.110 4.110 17 C -0.048 4.048 18 C -0.120 4.120 19 C 0.124 3.876 20 N -0.418 5.418 21 C -0.037 4.037 22 C -0.014 4.014 23 N -0.481 5.481 24 C 0.384 3.616 25 O -0.437 6.437 26 C -0.118 4.118 27 C -0.071 4.071 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.401 0.599 40 H 0.129 0.871 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 5.822 -17.062 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.345 5.345 14 C 0.324 3.676 15 O -0.419 6.419 16 C -0.113 4.113 17 C -0.068 4.068 18 C -0.139 4.139 19 C 0.033 3.967 20 N -0.110 5.110 21 C -0.167 4.167 22 C -0.160 4.160 23 N -0.209 5.209 24 C 0.085 3.915 25 O -0.237 6.237 26 C -0.138 4.138 27 C -0.090 4.090 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.201 0.799 38 H 0.198 0.802 39 H 0.258 0.742 40 H 0.146 0.854 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.521 6.675 -16.352 19.610 hybrid contribution 1.413 -0.942 0.112 1.702 sum -7.108 5.732 -16.241 18.632 Atomic orbital electron populations 1.21847 0.98321 0.98168 1.01204 1.21943 0.92642 0.99641 1.02427 1.18869 0.94408 0.89257 0.80677 0.93044 1.21237 0.90545 1.39214 1.06426 0.92016 1.24884 0.98689 0.94715 0.95337 1.69899 1.35115 1.37453 1.09345 0.86396 0.84727 0.77816 0.78184 1.19727 1.20830 1.20838 1.46494 1.14176 1.55157 1.18721 1.18030 0.83253 0.79654 0.86675 1.90768 1.51438 1.59969 1.39749 1.20563 0.95148 1.00243 0.95347 1.21225 0.95472 0.93152 0.96902 1.21014 1.00000 1.01158 0.91765 1.17827 0.95725 0.98109 0.85041 1.43589 1.17690 1.31008 1.18705 1.22790 0.91607 1.06672 0.95618 1.22226 0.96673 0.97463 0.99626 1.70578 1.07256 1.26374 1.16733 1.20584 0.89466 0.91864 0.89558 1.84932 1.11162 1.53522 1.74117 1.20806 0.95168 0.98900 0.98884 1.21297 0.99553 0.96715 0.91453 0.94377 0.95740 0.93060 0.94964 0.88133 0.92523 0.77897 0.83474 0.84733 0.79913 0.80247 0.74220 0.85350 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.45 2.24 -69.08 -0.15 6.30 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.70 -13.53 4.97 -55.94 -0.28 -13.81 16 14 C 0.54 10.05 6.33 -12.42 -0.08 9.97 16 15 O -0.54 -11.84 13.47 5.29 0.07 -11.77 16 16 C -0.11 -1.56 5.88 -104.95 -0.62 -2.18 16 17 C -0.05 -0.61 9.58 -39.22 -0.38 -0.98 16 18 C -0.12 -1.28 9.67 -39.47 -0.38 -1.66 16 19 C 0.12 1.33 5.98 -83.60 -0.50 0.83 16 20 N -0.42 -4.38 2.89 -62.15 -0.18 -4.56 16 21 C -0.04 -0.32 11.30 -16.25 -0.18 -0.51 16 22 C -0.01 -0.13 11.84 -17.78 -0.21 -0.34 16 23 N -0.48 -5.88 11.27 -14.64 -0.17 -6.04 16 24 C 0.38 4.43 8.85 -88.85 -0.79 3.64 16 25 O -0.44 -4.39 13.24 -18.16 -0.24 -4.63 16 26 C -0.12 -1.19 9.38 -39.47 -0.37 -1.56 16 27 C -0.07 -0.81 9.53 -39.22 -0.37 -1.19 16 28 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.39 6.39 6.56 -40.82 -0.27 6.12 16 35 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.40 1.95 9.06 45.56 0.41 2.37 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.14 1.40 6.39 -52.48 -0.34 1.06 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -32.42 347.81 -8.27 -40.69 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.07 Total: 8.85 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.26 Total: -5.63 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.00 Total: -47.72 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.17 Total: -16.39 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.42 -8.27 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593604619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.271 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds