Wall clock time and date at job start Tue Mar 31 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 H 1.08999 * 109.47184 * 55.00339 * 3 2 1 5 5 C 1.50705 * 109.46800 * 174.99896 * 3 2 1 6 6 H 1.08000 * 119.99693 * 120.00694 * 5 3 2 7 7 C 1.37872 * 120.00100 * 300.00015 * 5 3 2 8 8 N 1.31523 * 120.00087 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00176 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47305 * 119.99604 * 9 7 5 12 12 H 1.48501 * 109.47168 * 239.99814 * 9 7 5 13 13 N 1.46501 * 109.47219 * 294.99650 * 3 2 1 14 14 C 1.34774 * 119.99648 * 85.00082 * 13 3 2 15 15 O 1.21582 * 120.00094 * 359.97438 * 14 13 3 16 16 C 1.47642 * 120.00092 * 179.97438 * 14 13 3 17 17 C 1.39712 * 120.08158 * 179.97438 * 16 14 13 18 18 C 1.37715 * 119.92060 * 179.97438 * 17 16 14 19 19 C 1.39047 * 120.07812 * 0.02562 * 18 17 16 20 20 N 1.39830 * 119.92205 * 179.97438 * 19 18 17 21 21 C 1.37749 * 126.52097 * 310.02881 * 20 19 18 22 22 C 1.34402 * 106.90318 * 179.97438 * 21 20 19 23 23 N 1.34403 * 108.34670 * 359.97438 * 22 21 20 24 24 C 1.30994 * 109.37136 * 359.76018 * 23 22 21 25 25 O 1.35489 * 125.78717 * 180.26163 * 24 23 22 26 26 C 1.39059 * 120.16254 * 0.02562 * 19 18 17 27 27 C 1.37707 * 120.07562 * 359.97438 * 26 19 18 28 28 H 1.09005 * 109.46748 * 60.00242 * 1 2 3 29 29 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47387 * 299.99893 * 1 2 3 31 31 H 1.09004 * 109.47755 * 240.00103 * 2 1 3 32 32 H 1.08996 * 109.47275 * 120.00001 * 2 1 3 33 33 H 0.96994 * 119.99669 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00069 * 264.99946 * 13 3 2 35 35 H 1.08001 * 120.04210 * 359.96219 * 17 16 14 36 36 H 1.08001 * 119.96216 * 179.72275 * 18 17 16 37 37 H 1.07999 * 126.54912 * 359.97365 * 21 20 19 38 38 H 1.07995 * 125.82433 * 179.97438 * 22 21 20 39 39 H 0.96705 * 113.99661 * 270.14203 * 25 24 23 40 40 H 1.07996 * 119.96076 * 179.97438 * 26 19 18 41 41 H 1.08003 * 120.03658 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0049 0.8813 1.3819 10 1 6.5987 1.5463 0.1943 11 1 6.3989 1.6168 2.6102 12 1 6.4970 -0.5174 1.4631 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6318 -0.4321 16 6 0.0447 3.3250 -2.6283 17 6 -1.2170 3.9127 -2.7497 18 6 -1.5775 4.5284 -3.9276 19 6 -0.6877 4.5652 -4.9955 20 7 -1.0574 5.1908 -6.1901 21 6 -2.2221 4.9859 -6.8966 22 6 -2.1706 5.7858 -7.9754 23 7 -1.0125 6.4670 -7.9422 24 6 -0.3371 6.1239 -6.8735 25 8 0.8738 6.6117 -6.5109 26 6 0.5685 3.9804 -4.8787 27 6 0.9358 3.3629 -3.7039 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0618 2.9494 34 1 2.2720 2.1232 -1.9978 35 1 -1.9088 3.8839 -1.9209 36 1 -2.5543 4.9790 -4.0237 37 1 -3.0235 4.3114 -6.6337 38 1 -2.9302 5.8672 -8.7388 39 1 1.6215 6.1107 -6.8646 40 1 1.2568 4.0105 -5.7103 41 1 1.9117 2.9093 -3.6137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593604619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:09 Heat of formation + Delta-G solvation = -2.752392 kcal Electronic energy + Delta-G solvation = -25309.945945 eV Core-core repulsion = 21576.678007 eV Total energy + Delta-G solvation = -3733.267938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.34419 -41.23339 -39.54880 -38.32046 -36.96973 -35.26414 -34.34189 -32.97328 -32.17919 -30.80976 -29.70829 -28.84026 -25.64711 -24.74908 -24.05236 -22.70933 -22.30645 -21.95528 -21.17895 -20.03517 -19.50968 -18.34079 -17.81907 -17.33462 -16.85471 -16.50547 -16.30066 -15.99732 -15.85708 -15.52168 -15.20478 -14.80659 -14.69995 -14.58264 -14.51211 -14.16298 -13.64684 -13.62181 -13.38557 -13.17088 -12.90537 -12.88297 -12.71105 -12.37817 -12.15362 -12.06580 -11.61117 -11.46095 -11.12533 -11.04933 -10.83998 -10.54044 -10.23567 -9.91807 -9.63645 -9.41035 -8.16696 -6.33848 -0.55412 0.16599 0.80708 1.31645 1.44184 1.46078 1.56997 1.82771 1.92062 2.32536 2.55718 2.71700 2.83031 3.13503 3.61493 3.67788 3.76355 3.84219 4.11166 4.15369 4.44249 4.45470 4.49945 4.57036 4.57246 4.74559 4.78465 4.84763 4.94771 5.06917 5.15552 5.21931 5.29526 5.42746 5.44260 5.54423 5.57572 5.59946 5.78692 5.85558 5.90984 6.16135 6.65214 6.73745 6.83825 6.91693 7.31889 7.50011 8.88877 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002823 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.831303 B = 9916.655313 C =10855.406580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.696 5.696 14 C 0.538 3.462 15 O -0.581 6.581 16 C -0.133 4.133 17 C -0.052 4.052 18 C -0.114 4.114 19 C 0.131 3.869 20 N -0.422 5.422 21 C -0.032 4.032 22 C -0.024 4.024 23 N -0.513 5.513 24 C 0.370 3.630 25 O -0.449 6.449 26 C -0.111 4.111 27 C -0.063 4.063 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.214 0.786 38 H 0.206 0.794 39 H 0.420 0.580 40 H 0.158 0.842 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 6.121 -19.798 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.345 5.345 14 C 0.326 3.674 15 O -0.463 6.463 16 C -0.136 4.136 17 C -0.072 4.072 18 C -0.133 4.133 19 C 0.039 3.961 20 N -0.115 5.115 21 C -0.161 4.161 22 C -0.169 4.169 23 N -0.242 5.242 24 C 0.072 3.928 25 O -0.252 6.252 26 C -0.130 4.130 27 C -0.082 4.082 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.231 0.769 38 H 0.223 0.777 39 H 0.281 0.719 40 H 0.175 0.825 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.182 6.983 -19.149 21.964 hybrid contribution 1.236 -0.956 0.866 1.786 sum -6.947 6.028 -18.283 20.466 Atomic orbital electron populations 1.21685 0.96991 0.99206 1.00268 1.21791 0.93750 0.99035 1.01450 1.18427 0.93780 0.89245 0.81129 0.98163 1.21595 0.91302 1.38851 1.06733 0.90853 1.25748 1.03180 0.94416 0.95068 1.70052 1.36972 1.38356 1.09907 0.85348 0.79287 0.77785 0.78221 1.18286 1.21235 1.20531 1.46204 1.15143 1.55375 1.17764 1.18652 0.82220 0.78733 0.87797 1.90742 1.52458 1.61406 1.41737 1.20195 0.96807 1.02455 0.94132 1.21194 0.94857 0.93494 0.97611 1.21125 1.00969 1.00411 0.90770 1.17980 0.95856 0.97162 0.85091 1.43655 1.18250 1.31012 1.18553 1.23358 0.91384 1.06450 0.94920 1.22747 0.96431 0.97123 1.00607 1.70563 1.08624 1.27472 1.17541 1.20724 0.90029 0.92316 0.89747 1.84882 1.11573 1.54379 1.74405 1.21061 0.95406 0.97575 0.98972 1.21399 0.99512 0.96360 0.90935 0.93792 0.93555 0.95476 0.93869 0.90938 0.92610 0.76066 0.84283 0.82633 0.76934 0.77737 0.71936 0.82483 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.78 5.45 30.60 0.17 -5.61 16 3 C 0.28 13.70 2.24 44.25 0.10 13.80 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -27.82 8.73 25.60 0.22 -27.60 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.16 11.29 21.45 0.24 -50.92 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.94 16 10 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.70 -27.18 4.97 -449.15 -2.23 -29.41 16 14 C 0.54 20.39 6.33 86.73 0.55 20.94 16 15 O -0.58 -26.59 13.47 -3.98 -0.05 -26.65 16 16 C -0.13 -3.67 5.88 -20.08 -0.12 -3.79 16 17 C -0.05 -1.27 9.58 22.50 0.22 -1.05 16 18 C -0.11 -2.15 9.67 22.34 0.22 -1.94 16 19 C 0.13 2.41 5.98 38.26 0.23 2.64 16 20 N -0.42 -7.57 2.89 -461.41 -1.33 -8.91 16 21 C -0.03 -0.46 11.30 82.89 0.94 0.48 16 22 C -0.02 -0.38 11.84 83.42 0.99 0.60 16 23 N -0.51 -11.52 11.27 -313.83 -3.54 -15.06 16 24 C 0.37 7.69 8.85 179.73 1.59 9.28 16 25 O -0.45 -8.04 13.24 -87.89 -1.16 -9.21 16 26 C -0.11 -1.87 9.38 22.34 0.21 -1.66 16 27 C -0.06 -1.30 9.53 22.50 0.21 -1.09 16 28 H 0.04 1.84 5.64 -2.38 -0.01 1.83 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.27 7.84 -2.39 -0.02 1.26 16 31 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 33 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.40 12.93 6.56 -92.71 -0.61 12.32 16 35 H 0.14 3.57 7.64 -2.91 -0.02 3.55 16 36 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.42 3.07 9.06 -74.05 -0.67 2.40 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.16 2.67 6.39 -2.91 -0.02 2.65 16 Total: -1.00 -72.46 347.81 0.34 -72.12 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.19 Total: 23.61 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.58 Total: 1.49 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -6.86 Total: -104.30 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.22 Total: -35.85 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -72.46 0.34 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593604619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.367 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds