Wall clock time and date at job start Tue Mar 31 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46731 * 2 1 4 4 H 1.09005 * 109.46907 * 54.99701 * 3 2 1 5 5 C 1.50694 * 109.47019 * 175.00053 * 3 2 1 6 6 H 1.08000 * 120.00366 * 120.00002 * 5 3 2 7 7 C 1.37881 * 119.99973 * 299.99604 * 5 3 2 8 8 N 1.31520 * 119.99877 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99918 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47313 * 89.99732 * 9 7 5 11 11 H 1.48506 * 109.46982 * 209.99722 * 9 7 5 12 12 H 1.48505 * 109.47092 * 329.99535 * 9 7 5 13 13 N 1.46502 * 109.47215 * 294.99962 * 3 2 1 14 14 C 1.34773 * 120.00147 * 84.99584 * 13 3 2 15 15 O 1.21575 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.47746 * 120.00130 * 180.02562 * 14 13 3 17 17 C 1.41183 * 126.33070 * 180.02562 * 16 14 13 18 18 C 1.36719 * 105.43640 * 179.97438 * 17 16 14 19 19 C 1.47951 * 126.59581 * 180.02562 * 18 17 16 20 20 C 1.39447 * 120.16400 * 320.00034 * 19 18 17 21 21 C 1.37972 * 119.91574 * 180.02562 * 20 19 18 22 22 C 1.38405 * 120.25269 * 0.02562 * 21 20 19 23 23 C 1.38206 * 120.33467 * 359.97438 * 22 21 20 24 24 C 1.38545 * 120.07635 * 0.02562 * 23 22 21 25 25 O 1.35841 * 120.12940 * 179.97438 * 24 23 22 26 26 N 1.36365 * 106.80181 * 0.26511 * 18 17 16 27 27 H 0.97002 * 125.00875 * 179.70440 * 26 18 17 28 28 N 1.28449 * 109.98019 * 359.54515 * 26 18 17 29 29 H 1.08999 * 109.47757 * 299.99637 * 1 2 3 30 30 H 1.08996 * 109.47284 * 60.00592 * 1 2 3 31 31 H 1.09007 * 109.46619 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47256 * 240.00504 * 2 1 3 33 33 H 1.08996 * 109.47284 * 119.99408 * 2 1 3 34 34 H 0.96998 * 119.99727 * 180.02562 * 8 7 5 35 35 H 0.97008 * 119.99705 * 265.00387 * 13 3 2 36 36 H 1.08007 * 127.28214 * 359.96324 * 17 16 14 37 37 H 1.07997 * 120.04769 * 0.04881 * 20 19 18 38 38 H 1.08001 * 119.87710 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.83411 * 179.72357 * 22 21 20 40 40 H 1.07993 * 119.96707 * 179.97438 * 23 22 21 41 41 H 0.96704 * 113.99907 * 269.99780 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5417 1.4445 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8787 1.2280 8 7 5.4539 0.8799 1.3358 9 14 3.0963 0.1091 2.5701 10 1 2.8755 -1.3270 2.2635 11 1 3.7936 0.2351 3.8752 12 1 1.7875 0.8076 2.6387 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4320 16 6 0.0439 3.3244 -2.6297 17 6 -1.1898 3.9574 -2.8954 18 6 -1.0937 4.4173 -4.1793 19 6 -2.1314 5.1567 -4.9313 20 6 -3.4726 4.7924 -4.8174 21 6 -4.4360 5.4851 -5.5214 22 6 -4.0765 6.5406 -6.3413 23 6 -2.7503 6.9105 -6.4620 24 6 -1.7716 6.2245 -5.7613 25 8 -0.4678 6.5868 -5.8794 26 7 0.1404 4.0588 -4.6351 27 1 0.4838 4.2512 -5.5217 28 7 0.7826 3.4316 -3.7163 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 5.8770 0.4815 2.1124 35 1 2.2719 2.1232 -1.9978 36 1 -2.0315 4.0571 -2.2260 37 1 -3.7570 3.9693 -4.1786 38 1 -5.4746 5.2027 -5.4324 39 1 -4.8357 7.0753 -6.8928 40 1 -2.4764 7.7348 -7.1037 41 1 0.0035 6.1331 -6.5916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600819107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:21 Heat of formation + Delta-G solvation = 22.188422 kcal Electronic energy + Delta-G solvation = -25310.107863 eV Core-core repulsion = 21577.921441 eV Total energy + Delta-G solvation = -3732.186423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.58392 -40.01876 -38.85772 -37.16319 -35.25889 -33.03480 -32.35604 -31.95577 -31.09556 -30.44982 -28.94911 -27.47731 -24.08268 -23.66191 -22.92527 -22.43129 -21.11267 -20.33640 -19.44439 -18.99256 -18.14541 -17.25085 -16.37107 -16.15034 -15.98511 -15.67351 -15.38980 -15.14872 -14.55131 -14.40576 -14.12988 -13.69906 -13.62945 -13.26882 -12.93268 -12.76600 -12.60659 -12.30046 -12.11827 -11.85803 -11.72986 -11.09436 -10.99667 -10.88254 -10.84369 -10.57196 -9.97276 -9.86518 -9.59773 -9.29416 -9.25118 -9.23619 -9.15681 -8.69719 -8.53566 -7.99506 -6.15287 -4.17339 0.50317 0.81686 1.81038 2.20236 2.70760 3.22623 3.28040 3.39775 3.45384 3.63481 3.84574 3.94187 4.26801 4.36882 4.44886 4.56320 4.68419 4.86586 5.00544 5.18126 5.22262 5.39278 5.45462 5.62628 5.74240 5.84045 5.97923 6.01809 6.03304 6.08713 6.23466 6.29723 6.38058 6.72347 6.75190 6.85566 6.90567 7.02394 7.10429 7.33734 7.34988 7.56599 7.83245 8.24925 8.61020 8.82498 8.98607 9.45408 10.96874 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.002774 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.085450 B =10090.658710 C =10736.874364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.684 5.684 14 C 0.588 3.412 15 O -0.542 6.542 16 C 0.001 3.999 17 C -0.156 4.156 18 C 0.048 3.952 19 C -0.044 4.044 20 C -0.078 4.078 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.141 4.141 24 C 0.112 3.888 25 O -0.491 6.491 26 N -0.376 5.376 27 H 0.439 0.561 28 N -0.246 5.246 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.401 0.599 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.410 9.122 -19.173 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.331 5.331 14 C 0.371 3.629 15 O -0.418 6.418 16 C -0.159 4.159 17 C -0.184 4.184 18 C -0.077 4.077 19 C -0.047 4.047 20 C -0.097 4.097 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.160 4.160 24 C 0.067 3.933 25 O -0.300 6.300 26 N -0.091 5.091 27 H 0.283 0.717 28 N -0.082 5.082 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.235 0.765 36 H 0.181 0.819 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -17.828 9.090 -18.244 27.080 hybrid contribution -0.437 -0.354 -0.244 0.613 sum -18.265 8.736 -18.488 27.418 Atomic orbital electron populations 1.21885 0.96914 0.99065 1.02330 1.22289 0.94410 0.99863 1.01161 1.19215 0.95760 0.88558 0.82657 0.93091 1.21056 0.88563 1.39643 1.07841 0.90110 1.24833 0.94873 0.95179 0.97651 1.69875 1.08684 1.44619 1.29817 0.86906 0.81047 0.79955 0.80855 1.20242 1.22218 1.18330 1.46065 1.14320 1.54607 1.18146 1.16883 0.82884 0.78635 0.84503 1.90761 1.51983 1.60517 1.38588 1.22217 0.93708 1.05426 0.94580 1.21727 0.99538 1.02470 0.94615 1.19618 0.87951 1.04975 0.95135 1.18298 0.92359 0.95104 0.98918 1.21199 0.90628 0.99499 0.98404 1.21163 0.99793 0.96087 0.97106 1.21168 0.95624 0.96805 0.98200 1.21357 0.92963 1.01098 1.00559 1.18536 0.84325 0.93599 0.96887 1.84922 1.20074 1.67644 1.57409 1.43464 1.10526 1.41311 1.13782 0.71675 1.73561 1.22849 1.13591 0.98154 0.92772 0.92903 0.94948 0.92220 0.92707 0.92336 0.76457 0.81859 0.84590 0.85066 0.85273 0.84978 0.75904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.14 -3.16 5.11 -26.73 -0.14 -3.30 16 3 C 0.24 5.92 1.83 -69.08 -0.13 5.79 16 4 H 0.05 1.36 6.63 -51.93 -0.34 1.02 16 5 C -0.53 -14.80 9.31 -34.44 -0.32 -15.12 16 6 H 0.08 2.37 7.98 -52.49 -0.42 1.96 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.88 22.05 24.41 -169.99 -4.15 17.90 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.38 6.53 56.52 0.37 -6.02 16 13 N -0.68 -14.69 5.02 -55.90 -0.28 -14.97 16 14 C 0.59 12.10 6.39 -12.38 -0.08 12.02 16 15 O -0.54 -12.31 14.05 5.30 0.07 -12.23 16 16 C 0.00 0.03 7.11 -82.86 -0.59 -0.56 16 17 C -0.16 -2.28 10.53 -39.01 -0.41 -2.69 16 18 C 0.05 0.57 6.43 -82.42 -0.53 0.04 16 19 C -0.04 -0.43 5.84 -104.83 -0.61 -1.04 16 20 C -0.08 -0.63 9.62 -39.23 -0.38 -1.01 16 21 C -0.12 -0.78 10.03 -39.62 -0.40 -1.18 16 22 C -0.10 -0.59 10.03 -39.53 -0.40 -0.99 16 23 C -0.14 -0.97 9.98 -39.48 -0.39 -1.36 16 24 C 0.11 0.95 6.71 -38.83 -0.26 0.69 16 25 O -0.49 -3.89 12.28 -19.24 -0.24 -4.12 16 26 N -0.38 -4.28 6.53 33.31 0.22 -4.07 16 27 H 0.44 3.19 8.02 -190.45 -1.53 1.67 16 28 N -0.25 -3.74 11.89 33.37 0.40 -3.34 16 29 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16 30 H 0.05 1.08 5.64 -51.93 -0.29 0.79 16 31 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.30 3.21 -51.93 -0.17 1.14 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.40 8.10 8.26 -40.82 -0.34 7.76 16 36 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.14 1.00 8.03 -52.49 -0.42 0.57 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.39 1.11 8.53 45.56 0.39 1.50 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -34.95 342.46 -7.70 -42.65 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.25 Total: 8.38 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -4.41 Total: -9.24 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 1.11 Total: -48.50 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.16 Total: -16.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.15 Total: 17.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.95 -7.70 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600819107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.842 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds