Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46731 * 2 1 4 4 H 1.09005 * 109.46907 * 54.99701 * 3 2 1 5 5 C 1.50694 * 109.47019 * 175.00053 * 3 2 1 6 6 H 1.08000 * 120.00366 * 120.00002 * 5 3 2 7 7 C 1.37881 * 119.99973 * 299.99604 * 5 3 2 8 8 N 1.31520 * 119.99877 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99918 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47313 * 89.99732 * 9 7 5 11 11 H 1.48506 * 109.46982 * 209.99722 * 9 7 5 12 12 H 1.48505 * 109.47092 * 329.99535 * 9 7 5 13 13 N 1.46502 * 109.47215 * 294.99962 * 3 2 1 14 14 C 1.34773 * 120.00147 * 84.99584 * 13 3 2 15 15 O 1.21575 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.47746 * 120.00130 * 180.02562 * 14 13 3 17 17 C 1.41183 * 126.33070 * 180.02562 * 16 14 13 18 18 C 1.36719 * 105.43640 * 179.97438 * 17 16 14 19 19 C 1.47951 * 126.59581 * 180.02562 * 18 17 16 20 20 C 1.39447 * 120.16400 * 320.00034 * 19 18 17 21 21 C 1.37972 * 119.91574 * 180.02562 * 20 19 18 22 22 C 1.38405 * 120.25269 * 0.02562 * 21 20 19 23 23 C 1.38206 * 120.33467 * 359.97438 * 22 21 20 24 24 C 1.38545 * 120.07635 * 0.02562 * 23 22 21 25 25 O 1.35841 * 120.12940 * 179.97438 * 24 23 22 26 26 N 1.36365 * 106.80181 * 0.26511 * 18 17 16 27 27 H 0.97002 * 125.00875 * 179.70440 * 26 18 17 28 28 N 1.28449 * 109.98019 * 359.54515 * 26 18 17 29 29 H 1.08999 * 109.47757 * 299.99637 * 1 2 3 30 30 H 1.08996 * 109.47284 * 60.00592 * 1 2 3 31 31 H 1.09007 * 109.46619 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47256 * 240.00504 * 2 1 3 33 33 H 1.08996 * 109.47284 * 119.99408 * 2 1 3 34 34 H 0.96998 * 119.99727 * 180.02562 * 8 7 5 35 35 H 0.97008 * 119.99705 * 265.00387 * 13 3 2 36 36 H 1.08007 * 127.28214 * 359.96324 * 17 16 14 37 37 H 1.07997 * 120.04769 * 0.04881 * 20 19 18 38 38 H 1.08001 * 119.87710 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.83411 * 179.72357 * 22 21 20 40 40 H 1.07993 * 119.96707 * 179.97438 * 23 22 21 41 41 H 0.96704 * 113.99907 * 269.99780 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5417 1.4445 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8787 1.2280 8 7 5.4539 0.8799 1.3358 9 14 3.0963 0.1091 2.5701 10 1 2.8755 -1.3270 2.2635 11 1 3.7936 0.2351 3.8752 12 1 1.7875 0.8076 2.6387 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4320 16 6 0.0439 3.3244 -2.6297 17 6 -1.1898 3.9574 -2.8954 18 6 -1.0937 4.4173 -4.1793 19 6 -2.1314 5.1567 -4.9313 20 6 -3.4726 4.7924 -4.8174 21 6 -4.4360 5.4851 -5.5214 22 6 -4.0765 6.5406 -6.3413 23 6 -2.7503 6.9105 -6.4620 24 6 -1.7716 6.2245 -5.7613 25 8 -0.4678 6.5868 -5.8794 26 7 0.1404 4.0588 -4.6351 27 1 0.4838 4.2512 -5.5217 28 7 0.7826 3.4316 -3.7163 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 5.8770 0.4815 2.1124 35 1 2.2719 2.1232 -1.9978 36 1 -2.0315 4.0571 -2.2260 37 1 -3.7570 3.9693 -4.1786 38 1 -5.4746 5.2027 -5.4324 39 1 -4.8357 7.0753 -6.8928 40 1 -2.4764 7.7348 -7.1037 41 1 0.0035 6.1331 -6.5916 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600819107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = -5.006401 kcal Electronic energy + Delta-G solvation = -25311.287119 eV Core-core repulsion = 21577.921441 eV Total energy + Delta-G solvation = -3733.365679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.67170 -40.73126 -40.41804 -37.70775 -37.11455 -34.45667 -33.85494 -33.40115 -32.53660 -31.01503 -29.86067 -29.35487 -25.62500 -24.43432 -24.25682 -23.47363 -22.13422 -21.94687 -21.09668 -19.77989 -19.02194 -18.85460 -17.72528 -17.51874 -17.03325 -16.79354 -16.42486 -16.23013 -15.98493 -15.82021 -15.08718 -15.00292 -14.89892 -14.65675 -14.34795 -14.06667 -13.72990 -13.65244 -13.35047 -13.15908 -12.96447 -12.75924 -12.61573 -12.39775 -12.03350 -11.84225 -11.55814 -11.42645 -11.24694 -11.02567 -10.84878 -10.77662 -10.45578 -9.79605 -9.77365 -9.33077 -8.37474 -6.43712 -0.14038 0.30253 0.55127 1.19559 1.28648 1.36482 1.47328 1.78689 2.27413 2.37810 2.42781 2.67977 2.97931 3.12519 3.31097 3.48860 3.91048 4.12455 4.18834 4.24658 4.32848 4.37599 4.41165 4.48147 4.50176 4.67420 4.80358 4.84958 4.98511 5.00854 5.12314 5.19834 5.24396 5.36170 5.38158 5.39856 5.51395 5.52432 5.61416 5.84168 5.96049 6.14566 6.56558 6.66558 6.69576 6.91355 7.17510 7.36052 8.78005 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.002774 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.085450 B =10090.658710 C =10736.874364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.028 0.972 5 C -0.536 4.536 6 H 0.051 0.949 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.257 1.257 13 N -0.688 5.688 14 C 0.590 3.410 15 O -0.567 6.567 16 C -0.027 4.027 17 C -0.177 4.177 18 C 0.075 3.925 19 C -0.074 4.074 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.148 4.148 24 C 0.110 3.890 25 O -0.508 6.508 26 N -0.354 5.354 27 H 0.458 0.542 28 N -0.258 5.258 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.271 0.729 35 H 0.406 0.594 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.102 9.594 -21.052 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.046 0.954 5 C -0.574 4.574 6 H 0.070 0.930 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.181 1.181 13 N -0.336 5.336 14 C 0.375 3.625 15 O -0.446 6.446 16 C -0.186 4.186 17 C -0.204 4.204 18 C -0.051 4.051 19 C -0.076 4.076 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.166 4.166 24 C 0.064 3.936 25 O -0.320 6.320 26 N -0.072 5.072 27 H 0.306 0.694 28 N -0.095 5.095 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -20.513 9.561 -20.176 30.320 hybrid contribution 0.363 -0.334 0.122 0.508 sum -20.150 9.227 -20.054 29.889 Atomic orbital electron populations 1.21770 0.95013 1.00779 1.01636 1.22203 0.96046 0.98122 1.01149 1.18899 0.93405 0.89915 0.83367 0.95410 1.21256 0.90252 1.38822 1.07053 0.93043 1.25586 0.95853 0.95768 0.99873 1.69987 1.10359 1.46075 1.30904 0.85997 0.79377 0.80047 0.78050 1.18228 1.21916 1.18119 1.45919 1.15144 1.55194 1.17295 1.17220 0.81932 0.77846 0.85462 1.90726 1.52507 1.61399 1.39952 1.21732 0.95316 1.07528 0.94036 1.21824 0.98981 1.03609 0.96019 1.19853 0.88033 1.03013 0.94190 1.18334 0.92256 0.96422 1.00585 1.21362 0.90446 0.99864 0.98671 1.21472 1.00595 0.95788 0.96433 1.21576 0.95912 0.96079 0.97185 1.21612 0.93061 1.01346 1.00558 1.18658 0.84873 0.93345 0.96685 1.84865 1.20241 1.68219 1.58714 1.43520 1.10272 1.39497 1.13905 0.69421 1.73471 1.23302 1.14392 0.98351 0.93972 0.93129 0.91935 0.91492 0.93350 0.92011 0.75925 0.81547 0.84447 0.82670 0.82384 0.83285 0.73552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.14 -6.15 5.11 30.60 0.16 -6.00 16 3 C 0.25 12.42 1.83 44.25 0.08 12.50 16 4 H 0.03 1.53 6.63 -2.38 -0.02 1.51 16 5 C -0.54 -30.65 9.31 25.60 0.24 -30.41 16 6 H 0.05 3.17 7.98 -2.91 -0.02 3.14 16 7 C 0.03 1.68 5.45 84.65 0.46 2.14 16 8 N -0.93 -57.55 13.96 21.45 0.30 -57.25 16 9 Si 0.94 45.68 24.41 68.60 1.67 47.35 16 10 H -0.26 -11.66 6.83 99.48 0.68 -10.98 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 13 N -0.69 -30.35 5.02 -449.05 -2.25 -32.60 16 14 C 0.59 24.85 6.39 86.76 0.55 25.40 16 15 O -0.57 -26.33 14.05 -3.95 -0.06 -26.39 16 16 C -0.03 -0.95 7.11 42.38 0.30 -0.65 16 17 C -0.18 -5.16 10.53 22.64 0.24 -4.93 16 18 C 0.07 1.71 6.43 40.66 0.26 1.97 16 19 C -0.07 -1.29 5.84 -20.00 -0.12 -1.41 16 20 C -0.08 -1.20 9.62 22.50 0.22 -0.99 16 21 C -0.13 -1.19 10.03 22.25 0.22 -0.97 16 22 C -0.09 -0.72 10.03 22.30 0.22 -0.50 16 23 C -0.15 -1.56 9.98 22.34 0.22 -1.34 16 24 C 0.11 1.62 6.71 22.76 0.15 1.77 16 25 O -0.51 -7.01 12.28 -91.76 -1.13 -8.14 16 26 N -0.35 -7.70 6.53 -48.54 -0.32 -8.02 16 27 H 0.46 5.89 8.02 -220.00 -1.76 4.13 16 28 N -0.26 -7.81 11.89 -48.34 -0.57 -8.39 16 29 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16 30 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.05 2.23 3.21 -2.39 -0.01 2.23 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.41 16.97 8.26 -92.70 -0.77 16.20 16 36 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.14 1.84 8.03 -2.91 -0.02 1.81 16 38 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 39 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.41 1.45 8.53 -74.05 -0.63 0.81 16 Total: -1.00 -76.94 342.46 -0.66 -77.60 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -2.13 Total: 24.02 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 3.83 Total: -8.18 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.85 Total: -106.26 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.18 Total: -34.53 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal Total: -76.94 -0.66 -77.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600819107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.594 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds