Wall clock time and date at job start Tue Mar 31 2020 11:53:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53007 * 109.46731 * 2 1
4 4 H 1.09005 * 109.46907 * 54.99701 * 3 2 1
5 5 C 1.50694 * 109.47019 * 175.00053 * 3 2 1
6 6 H 1.08000 * 120.00366 * 120.00002 * 5 3 2
7 7 C 1.37881 * 119.99973 * 299.99604 * 5 3 2
8 8 N 1.31520 * 119.99877 * 179.97438 * 7 5 3
9 9 Si 1.86797 * 119.99918 * 0.02562 * 7 5 3
10 10 H 1.48504 * 109.47313 * 89.99732 * 9 7 5
11 11 H 1.48506 * 109.46982 * 209.99722 * 9 7 5
12 12 H 1.48505 * 109.47092 * 329.99535 * 9 7 5
13 13 N 1.46502 * 109.47215 * 294.99962 * 3 2 1
14 14 C 1.34773 * 120.00147 * 84.99584 * 13 3 2
15 15 O 1.21575 * 119.99970 * 0.02562 * 14 13 3
16 16 C 1.47746 * 120.00130 * 180.02562 * 14 13 3
17 17 C 1.41183 * 126.33070 * 180.02562 * 16 14 13
18 18 C 1.36719 * 105.43640 * 179.97438 * 17 16 14
19 19 C 1.47951 * 126.59581 * 180.02562 * 18 17 16
20 20 C 1.39447 * 120.16400 * 320.00034 * 19 18 17
21 21 C 1.37972 * 119.91574 * 180.02562 * 20 19 18
22 22 C 1.38405 * 120.25269 * 0.02562 * 21 20 19
23 23 C 1.38206 * 120.33467 * 359.97438 * 22 21 20
24 24 C 1.38545 * 120.07635 * 0.02562 * 23 22 21
25 25 O 1.35841 * 120.12940 * 179.97438 * 24 23 22
26 26 N 1.36365 * 106.80181 * 0.26511 * 18 17 16
27 27 H 0.97002 * 125.00875 * 179.70440 * 26 18 17
28 28 N 1.28449 * 109.98019 * 359.54515 * 26 18 17
29 29 H 1.08999 * 109.47757 * 299.99637 * 1 2 3
30 30 H 1.08996 * 109.47284 * 60.00592 * 1 2 3
31 31 H 1.09007 * 109.46619 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47256 * 240.00504 * 2 1 3
33 33 H 1.08996 * 109.47284 * 119.99408 * 2 1 3
34 34 H 0.96998 * 119.99727 * 180.02562 * 8 7 5
35 35 H 0.97008 * 119.99705 * 265.00387 * 13 3 2
36 36 H 1.08007 * 127.28214 * 359.96324 * 17 16 14
37 37 H 1.07997 * 120.04769 * 0.04881 * 20 19 18
38 38 H 1.08001 * 119.87710 * 180.02562 * 21 20 19
39 39 H 1.08004 * 119.83411 * 179.72357 * 22 21 20
40 40 H 1.07993 * 119.96707 * 179.97438 * 23 22 21
41 41 H 0.96704 * 113.99907 * 269.99780 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6052 1.9816 0.8418
5 6 3.5417 1.4445 0.1238
6 1 4.1471 1.8891 -0.6523
7 6 4.1432 0.8787 1.2280
8 7 5.4539 0.8799 1.3358
9 14 3.0963 0.1091 2.5701
10 1 2.8755 -1.3270 2.2635
11 1 3.7936 0.2351 3.8752
12 1 1.7875 0.8076 2.6387
13 7 1.6523 2.0976 -1.2518
14 6 0.4350 2.6643 -1.3670
15 8 -0.3413 2.6325 -0.4320
16 6 0.0439 3.3244 -2.6297
17 6 -1.1898 3.9574 -2.8954
18 6 -1.0937 4.4173 -4.1793
19 6 -2.1314 5.1567 -4.9313
20 6 -3.4726 4.7924 -4.8174
21 6 -4.4360 5.4851 -5.5214
22 6 -4.0765 6.5406 -6.3413
23 6 -2.7503 6.9105 -6.4620
24 6 -1.7716 6.2245 -5.7613
25 8 -0.4678 6.5868 -5.8794
26 7 0.1404 4.0588 -4.6351
27 1 0.4838 4.2512 -5.5217
28 7 0.7826 3.4316 -3.7163
29 1 -0.3634 0.5137 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3633 -1.0278 -0.0005
32 1 1.8933 -0.5137 -0.8900
33 1 1.8933 -0.5137 0.8900
34 1 5.8770 0.4815 2.1124
35 1 2.2719 2.1232 -1.9978
36 1 -2.0315 4.0571 -2.2260
37 1 -3.7570 3.9693 -4.1786
38 1 -5.4746 5.2027 -5.4324
39 1 -4.8357 7.0753 -6.8928
40 1 -2.4764 7.7348 -7.1037
41 1 0.0035 6.1331 -6.5916
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600819107.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:53:20
Heat of formation + Delta-G solvation = -5.006401 kcal
Electronic energy + Delta-G solvation = -25311.287119 eV
Core-core repulsion = 21577.921441 eV
Total energy + Delta-G solvation = -3733.365679 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.67170 -40.73126 -40.41804 -37.70775 -37.11455 -34.45667 -33.85494 -33.40115
-32.53660 -31.01503 -29.86067 -29.35487 -25.62500 -24.43432 -24.25682 -23.47363
-22.13422 -21.94687 -21.09668 -19.77989 -19.02194 -18.85460 -17.72528 -17.51874
-17.03325 -16.79354 -16.42486 -16.23013 -15.98493 -15.82021 -15.08718 -15.00292
-14.89892 -14.65675 -14.34795 -14.06667 -13.72990 -13.65244 -13.35047 -13.15908
-12.96447 -12.75924 -12.61573 -12.39775 -12.03350 -11.84225 -11.55814 -11.42645
-11.24694 -11.02567 -10.84878 -10.77662 -10.45578 -9.79605 -9.77365 -9.33077
-8.37474 -6.43712 -0.14038 0.30253 0.55127 1.19559 1.28648 1.36482
1.47328 1.78689 2.27413 2.37810 2.42781 2.67977 2.97931 3.12519
3.31097 3.48860 3.91048 4.12455 4.18834 4.24658 4.32848 4.37599
4.41165 4.48147 4.50176 4.67420 4.80358 4.84958 4.98511 5.00854
5.12314 5.19834 5.24396 5.36170 5.38158 5.39856 5.51395 5.52432
5.61416 5.84168 5.96049 6.14566 6.56558 6.66558 6.69576 6.91355
7.17510 7.36052 8.78005
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.029714 B = 0.002774 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.085450 B =10090.658710 C =10736.874364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.137 4.137
3 C 0.249 3.751
4 H 0.028 0.972
5 C -0.536 4.536
6 H 0.051 0.949
7 C 0.029 3.971
8 N -0.934 5.934
9 Si 0.939 3.061
10 H -0.257 1.257
11 H -0.292 1.292
12 H -0.257 1.257
13 N -0.688 5.688
14 C 0.590 3.410
15 O -0.567 6.567
16 C -0.027 4.027
17 C -0.177 4.177
18 C 0.075 3.925
19 C -0.074 4.074
20 C -0.084 4.084
21 C -0.125 4.125
22 C -0.089 4.089
23 C -0.148 4.148
24 C 0.110 3.890
25 O -0.508 6.508
26 N -0.354 5.354
27 H 0.458 0.542
28 N -0.258 5.258
29 H 0.041 0.959
30 H 0.050 0.950
31 H 0.062 0.938
32 H 0.066 0.934
33 H 0.048 0.952
34 H 0.271 0.729
35 H 0.406 0.594
36 H 0.167 0.833
37 H 0.138 0.862
38 H 0.156 0.844
39 H 0.159 0.841
40 H 0.149 0.851
41 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.102 9.594 -21.052 31.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.175 4.175
3 C 0.144 3.856
4 H 0.046 0.954
5 C -0.574 4.574
6 H 0.070 0.930
7 C -0.171 4.171
8 N -0.573 5.573
9 Si 0.765 3.235
10 H -0.182 1.182
11 H -0.219 1.219
12 H -0.181 1.181
13 N -0.336 5.336
14 C 0.375 3.625
15 O -0.446 6.446
16 C -0.186 4.186
17 C -0.204 4.204
18 C -0.051 4.051
19 C -0.076 4.076
20 C -0.103 4.103
21 C -0.143 4.143
22 C -0.108 4.108
23 C -0.166 4.166
24 C 0.064 3.936
25 O -0.320 6.320
26 N -0.072 5.072
27 H 0.306 0.694
28 N -0.095 5.095
29 H 0.060 0.940
30 H 0.069 0.931
31 H 0.081 0.919
32 H 0.085 0.915
33 H 0.067 0.933
34 H 0.080 0.920
35 H 0.241 0.759
36 H 0.185 0.815
37 H 0.156 0.844
38 H 0.173 0.827
39 H 0.176 0.824
40 H 0.167 0.833
41 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges -20.513 9.561 -20.176 30.320
hybrid contribution 0.363 -0.334 0.122 0.508
sum -20.150 9.227 -20.054 29.889
Atomic orbital electron populations
1.21770 0.95013 1.00779 1.01636 1.22203 0.96046 0.98122 1.01149
1.18899 0.93405 0.89915 0.83367 0.95410 1.21256 0.90252 1.38822
1.07053 0.93043 1.25586 0.95853 0.95768 0.99873 1.69987 1.10359
1.46075 1.30904 0.85997 0.79377 0.80047 0.78050 1.18228 1.21916
1.18119 1.45919 1.15144 1.55194 1.17295 1.17220 0.81932 0.77846
0.85462 1.90726 1.52507 1.61399 1.39952 1.21732 0.95316 1.07528
0.94036 1.21824 0.98981 1.03609 0.96019 1.19853 0.88033 1.03013
0.94190 1.18334 0.92256 0.96422 1.00585 1.21362 0.90446 0.99864
0.98671 1.21472 1.00595 0.95788 0.96433 1.21576 0.95912 0.96079
0.97185 1.21612 0.93061 1.01346 1.00558 1.18658 0.84873 0.93345
0.96685 1.84865 1.20241 1.68219 1.58714 1.43520 1.10272 1.39497
1.13905 0.69421 1.73471 1.23302 1.14392 0.98351 0.93972 0.93129
0.91935 0.91492 0.93350 0.92011 0.75925 0.81547 0.84447 0.82670
0.82384 0.83285 0.73552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.40 8.51 71.98 0.61 -4.78 16
2 C -0.14 -6.15 5.11 30.60 0.16 -6.00 16
3 C 0.25 12.42 1.83 44.25 0.08 12.50 16
4 H 0.03 1.53 6.63 -2.38 -0.02 1.51 16
5 C -0.54 -30.65 9.31 25.60 0.24 -30.41 16
6 H 0.05 3.17 7.98 -2.91 -0.02 3.14 16
7 C 0.03 1.68 5.45 84.65 0.46 2.14 16
8 N -0.93 -57.55 13.96 21.45 0.30 -57.25 16
9 Si 0.94 45.68 24.41 68.60 1.67 47.35 16
10 H -0.26 -11.66 6.83 99.48 0.68 -10.98 16
11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
12 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16
13 N -0.69 -30.35 5.02 -449.05 -2.25 -32.60 16
14 C 0.59 24.85 6.39 86.76 0.55 25.40 16
15 O -0.57 -26.33 14.05 -3.95 -0.06 -26.39 16
16 C -0.03 -0.95 7.11 42.38 0.30 -0.65 16
17 C -0.18 -5.16 10.53 22.64 0.24 -4.93 16
18 C 0.07 1.71 6.43 40.66 0.26 1.97 16
19 C -0.07 -1.29 5.84 -20.00 -0.12 -1.41 16
20 C -0.08 -1.20 9.62 22.50 0.22 -0.99 16
21 C -0.13 -1.19 10.03 22.25 0.22 -0.97 16
22 C -0.09 -0.72 10.03 22.30 0.22 -0.50 16
23 C -0.15 -1.56 9.98 22.34 0.22 -1.34 16
24 C 0.11 1.62 6.71 22.76 0.15 1.77 16
25 O -0.51 -7.01 12.28 -91.76 -1.13 -8.14 16
26 N -0.35 -7.70 6.53 -48.54 -0.32 -8.02 16
27 H 0.46 5.89 8.02 -220.00 -1.76 4.13 16
28 N -0.26 -7.81 11.89 -48.34 -0.57 -8.39 16
29 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16
30 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16
31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16
32 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16
33 H 0.05 2.23 3.21 -2.39 -0.01 2.23 16
34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16
35 H 0.41 16.97 8.26 -92.70 -0.77 16.20 16
36 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16
37 H 0.14 1.84 8.03 -2.91 -0.02 1.81 16
38 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16
39 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16
40 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16
41 H 0.41 1.45 8.53 -74.05 -0.63 0.81 16
Total: -1.00 -76.94 342.46 -0.66 -77.60
By element:
Atomic # 1 Polarization: 26.15 SS G_CDS: -2.13 Total: 24.02 kcal
Atomic # 6 Polarization: -12.01 SS G_CDS: 3.83 Total: -8.18 kcal
Atomic # 7 Polarization: -103.42 SS G_CDS: -2.85 Total: -106.26 kcal
Atomic # 8 Polarization: -33.34 SS G_CDS: -1.18 Total: -34.53 kcal
Atomic # 14 Polarization: 45.68 SS G_CDS: 1.67 Total: 47.35 kcal
Total: -76.94 -0.66 -77.60 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600819107.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.594 kcal
(2) G-P(sol) polarization free energy of solvation -76.944 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds