Wall clock time and date at job start Tue Mar 31 2020 11:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 C 1.50704 * 109.46588 * 240.00564 * 2 1 3 5 5 H 1.08002 * 119.99983 * 241.34041 * 4 2 1 6 6 C 1.37874 * 120.00540 * 61.34875 * 4 2 1 7 7 N 1.31509 * 120.00641 * 193.97557 * 6 4 2 8 8 Si 1.86804 * 119.99614 * 13.97033 * 6 4 2 9 9 H 1.48503 * 109.46936 * 84.55634 * 8 6 4 10 10 H 1.48499 * 109.47020 * 204.55143 * 8 6 4 11 11 H 1.48502 * 109.47495 * 324.55238 * 8 6 4 12 12 C 1.52992 * 109.47623 * 120.00782 * 2 1 3 13 13 N 1.46504 * 109.47060 * 299.99584 * 12 2 1 14 14 C 1.34771 * 120.00445 * 179.97438 * 13 12 2 15 15 O 1.21626 * 119.99937 * 0.02562 * 14 13 12 16 16 C 1.47281 * 120.00119 * 180.02562 * 14 13 12 17 17 N 1.31440 * 126.26214 * 0.02633 * 16 14 13 18 18 N 1.28671 * 109.34083 * 179.97438 * 17 16 14 19 19 C 1.31875 * 109.32156 * 0.02562 * 18 17 16 20 20 C 1.47684 * 126.28055 * 180.02562 * 19 18 17 21 21 C 1.39652 * 120.15152 * 179.69755 * 20 19 18 22 22 C 1.37938 * 119.84689 * 179.76930 * 21 20 19 23 23 C 1.38376 * 120.14777 * 0.50940 * 22 21 20 24 24 C 1.38373 * 120.30855 * 359.74463 * 23 22 21 25 25 C 1.37936 * 120.15260 * 0.02562 * 24 23 22 26 26 O 1.34488 * 107.44021 * 359.73345 * 19 18 17 27 27 H 1.09003 * 109.46492 * 309.36084 * 1 2 3 28 28 H 1.08995 * 109.47309 * 69.35831 * 1 2 3 29 29 H 1.09001 * 109.47196 * 189.36481 * 1 2 3 30 30 H 1.08996 * 109.47125 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47372 * 300.00748 * 3 2 1 32 32 H 1.08999 * 109.46603 * 60.00358 * 3 2 1 33 33 H 0.96997 * 120.00492 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47616 * 180.02562 * 12 2 1 35 35 H 1.08996 * 109.47612 * 59.99205 * 12 2 1 36 36 H 0.97006 * 119.99679 * 0.02562 * 13 12 2 37 37 H 1.07999 * 120.07527 * 0.02562 * 21 20 19 38 38 H 1.07992 * 119.92773 * 180.24973 * 22 21 20 39 39 H 1.07997 * 119.84332 * 179.75874 * 23 22 21 40 40 H 1.08002 * 119.92160 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.07954 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6351 -1.6009 -1.1318 6 6 1.7222 -0.2232 -2.4826 7 7 1.9155 -0.9723 -3.5461 8 14 1.0274 1.5008 -2.6683 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5868 -3.9286 11 1 0.1416 1.8044 -1.5157 12 6 2.0401 -0.7214 1.2490 13 7 1.5519 -0.0308 2.4454 14 6 1.8771 -0.4916 3.6694 15 8 2.5763 -1.4805 3.7809 16 6 1.3858 0.2023 4.8720 17 7 0.6266 1.2750 4.8950 18 7 0.3921 1.6050 6.1164 19 6 0.9953 0.7529 6.9221 20 6 0.9738 0.7812 8.3985 21 6 1.6564 -0.1940 9.1288 22 6 1.6360 -0.1588 10.5076 23 6 0.9326 0.8337 11.1671 24 6 0.2496 1.8000 10.4498 25 6 0.2654 1.7795 9.0707 26 8 1.6283 -0.1504 6.1526 27 1 -0.3632 0.6518 0.7946 28 1 -0.3634 0.3623 -0.9616 29 1 -0.3634 -1.0140 0.1672 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6971 -0.6297 -4.4269 34 1 3.1300 -0.7210 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.9939 0.7577 2.3564 37 1 2.2024 -0.9715 8.6152 38 1 2.1667 -0.9099 11.0736 39 1 0.9167 0.8543 12.2468 40 1 -0.2970 2.5720 10.9710 41 1 -0.2677 2.5345 8.5120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601213893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:14 Heat of formation + Delta-G solvation = 25.333065 kcal Electronic energy + Delta-G solvation = -24988.008423 eV Core-core repulsion = 21255.958362 eV Total energy + Delta-G solvation = -3732.050061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -45.52247 -41.10041 -40.10637 -38.57258 -37.67217 -35.29172 -34.15963 -33.47846 -32.05898 -31.20998 -28.20832 -27.99222 -27.08859 -25.93378 -25.54235 -23.47468 -22.84376 -22.42502 -21.12038 -19.82627 -18.88638 -18.71221 -18.09563 -17.78857 -17.13171 -16.96181 -16.61914 -16.53173 -15.85302 -15.52273 -15.03009 -14.97357 -14.74537 -14.48755 -14.47169 -14.06645 -14.03793 -13.89394 -13.76580 -13.46927 -13.05175 -12.95016 -12.47044 -12.40060 -12.24271 -12.09164 -11.97214 -11.78988 -11.77502 -11.64059 -11.07295 -10.62505 -10.43254 -10.35530 -10.04773 -9.75922 -8.29317 -6.30840 -1.06986 -0.02153 0.33458 0.38215 0.99577 1.38265 1.40001 1.51538 1.59940 1.88649 2.35416 2.62293 2.71294 2.81233 3.06712 3.56860 3.77557 3.84511 3.92890 3.97854 4.00882 4.22758 4.27582 4.37572 4.38330 4.47447 4.69081 4.76195 4.77333 4.83078 4.89204 4.97603 5.01159 5.04979 5.25771 5.27628 5.36972 5.45088 5.46819 5.67890 5.75667 5.84434 6.04268 6.29906 6.61274 6.72241 6.75472 7.34003 8.87056 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.037506 B = 0.002438 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.362553 B =11482.777216 C =12022.919274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.027 3.973 3 C -0.152 4.152 4 C -0.513 4.513 5 H 0.037 0.963 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.939 3.061 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.207 1.207 12 C 0.153 3.847 13 N -0.671 5.671 14 C 0.614 3.386 15 O -0.543 6.543 16 C 0.118 3.882 17 N -0.230 5.230 18 N -0.293 5.293 19 C 0.240 3.760 20 C -0.065 4.065 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.120 4.120 25 C -0.067 4.067 26 O -0.196 6.196 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 7.666 32.153 33.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.551 4.551 5 H 0.055 0.945 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.769 3.231 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.131 1.131 12 C 0.031 3.969 13 N -0.324 5.324 14 C 0.394 3.606 15 O -0.419 6.419 16 C -0.093 4.093 17 N -0.085 5.085 18 N -0.143 5.143 19 C 0.036 3.964 20 C -0.067 4.067 21 C -0.108 4.108 22 C -0.140 4.140 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.087 4.087 26 O -0.073 6.073 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.702 7.876 31.566 32.872 hybrid contribution 0.538 -0.377 -0.943 1.149 sum -4.164 7.499 30.624 31.802 Atomic orbital electron populations 1.22279 0.96127 1.00959 1.01005 1.18687 0.93833 0.93133 0.91738 1.22350 1.01433 0.96867 1.00264 1.20927 1.32967 1.11219 0.90001 0.94484 1.25782 0.95410 1.01259 0.95373 1.70088 1.50531 1.38123 0.99380 0.86416 0.79439 0.80397 0.76871 1.20942 1.24585 1.13114 1.21467 0.98742 0.95602 0.81047 1.45790 1.51292 1.31841 1.03480 1.15877 0.80856 0.83036 0.80824 1.90893 1.38738 1.26278 1.85993 1.27028 1.01289 0.96260 0.84768 1.74727 1.10630 1.09011 1.14128 1.74962 1.21317 1.23165 0.94868 1.26511 0.89833 0.84092 0.96005 1.17512 1.06463 1.01737 0.80998 1.21510 0.96823 0.96666 0.95818 1.21481 0.99760 1.00098 0.92639 1.21955 0.92977 0.92284 1.02377 1.21532 0.99787 1.00240 0.92216 1.21417 0.95652 0.95841 0.95761 1.84908 1.58440 1.47354 1.16606 0.92064 0.93380 0.93414 0.92779 0.94556 0.91272 0.92667 0.91632 0.91824 0.74102 0.85156 0.82337 0.81696 0.81800 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 7.53 71.98 0.54 -4.99 16 2 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 3 C -0.15 -5.69 7.52 71.98 0.54 -5.14 16 4 C -0.51 -27.37 8.62 25.60 0.22 -27.15 16 5 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 6 C 0.02 1.10 5.32 84.65 0.45 1.55 16 7 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 8 Si 0.94 42.52 22.79 68.60 1.56 44.08 16 9 H -0.28 -12.56 7.10 99.48 0.71 -11.85 16 10 H -0.32 -14.85 7.11 99.48 0.71 -14.14 16 11 H -0.21 -8.04 4.65 99.48 0.46 -7.58 16 12 C 0.15 5.80 4.49 86.38 0.39 6.19 16 13 N -0.67 -21.45 5.00 -466.53 -2.33 -23.78 16 14 C 0.61 20.69 7.81 86.62 0.68 21.37 16 15 O -0.54 -21.59 17.11 -0.05 0.00 -21.59 16 16 C 0.12 3.65 8.20 87.13 0.71 4.37 16 17 N -0.23 -6.88 11.93 -166.28 -1.98 -8.86 16 18 N -0.29 -8.18 11.94 -166.13 -1.98 -10.17 16 19 C 0.24 6.09 7.98 87.18 0.70 6.78 16 20 C -0.07 -1.20 5.87 -20.10 -0.12 -1.32 16 21 C -0.09 -1.30 9.73 22.54 0.22 -1.08 16 22 C -0.12 -1.03 10.03 22.23 0.22 -0.81 16 23 C -0.08 -0.44 10.04 22.33 0.22 -0.21 16 24 C -0.12 -0.90 10.03 22.23 0.22 -0.68 16 25 C -0.07 -0.92 9.70 22.54 0.22 -0.70 16 26 O -0.20 -5.72 10.67 -7.48 -0.08 -5.80 16 27 H 0.06 1.88 7.13 -2.39 -0.02 1.86 16 28 H 0.05 1.93 4.30 -2.39 -0.01 1.91 16 29 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.42 2.25 -2.39 -0.01 1.42 16 32 H 0.07 2.07 6.86 -2.39 -0.02 2.06 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.42 11.87 5.96 -92.70 -0.55 11.31 16 37 H 0.13 1.96 7.93 -2.91 -0.02 1.93 16 38 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 39 H 0.17 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.14 1.89 7.86 -2.91 -0.02 1.87 16 Total: -1.00 -70.04 340.93 0.96 -69.08 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.29 Total: 14.99 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.19 Total: -0.73 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -6.00 Total: -100.03 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.08 Total: -27.39 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.56 Total: 44.08 kcal Total: -70.04 0.96 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601213893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.409 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds