Wall clock time and date at job start Tue Mar 31 2020 10:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.52999 * 109.47203 * 176.21997 * 3 2 1 5 5 C 1.52997 * 109.46932 * 180.89077 * 4 3 2 6 6 C 1.53000 * 109.47178 * 296.22504 * 3 2 1 7 7 N 1.46507 * 109.46870 * 300.27723 * 6 3 2 8 8 C 1.46491 * 119.99837 * 278.58706 * 7 6 3 9 9 C 1.50698 * 109.47451 * 272.55668 * 8 7 6 10 10 H 1.08003 * 119.99647 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00460 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00100 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00040 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47233 * 89.99223 * 13 11 9 15 15 H 1.48497 * 109.47608 * 209.99734 * 13 11 9 16 16 H 1.48499 * 109.47065 * 329.99780 * 13 11 9 17 17 S 1.65602 * 119.99795 * 98.58520 * 7 6 3 18 18 O 1.42100 * 106.39803 * 151.50237 * 17 7 6 19 19 O 1.42097 * 106.40202 * 18.58715 * 17 7 6 20 20 C 1.76199 * 107.21788 * 265.04130 * 17 7 6 21 21 N 1.30502 * 125.64600 * 96.77482 * 20 17 7 22 22 C 1.34124 * 109.25535 * 180.02562 * 21 20 17 23 23 C 1.34669 * 108.02222 * 0.02562 * 22 21 20 24 24 N 1.35040 * 125.65512 * 276.79284 * 20 17 7 25 25 H 0.97001 * 126.39207 * 0.03080 * 24 20 17 26 26 H 1.09002 * 109.47478 * 63.79436 * 1 2 3 27 27 H 1.09010 * 109.46996 * 183.79191 * 1 2 3 28 28 H 1.09004 * 109.47332 * 303.78416 * 1 2 3 29 29 H 1.08997 * 109.47371 * 240.00064 * 2 1 3 30 30 H 1.09000 * 109.47091 * 120.00275 * 2 1 3 31 31 H 1.09007 * 109.46833 * 56.22513 * 3 2 1 32 32 H 1.09000 * 109.47441 * 300.89738 * 4 3 2 33 33 H 1.09004 * 109.46603 * 60.89304 * 4 3 2 34 34 H 1.08995 * 109.47424 * 299.99846 * 5 4 3 35 35 H 1.08995 * 109.47497 * 60.00701 * 5 4 3 36 36 H 1.09007 * 109.47000 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.46986 * 180.27935 * 6 3 2 38 38 H 1.08996 * 109.47087 * 60.27358 * 6 3 2 39 39 H 1.09003 * 109.47343 * 32.55961 * 8 7 6 40 40 H 1.09008 * 109.47317 * 152.55834 * 8 7 6 41 41 H 0.96998 * 119.99839 * 180.02562 * 12 11 9 42 42 H 1.07999 * 125.99189 * 179.72933 * 22 21 20 43 43 H 1.08000 * 126.59377 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.4436 0.0951 5 6 4.0755 2.8864 0.1175 6 6 1.6090 2.1358 -1.2940 7 7 2.1647 1.4155 -2.4424 8 6 3.5504 1.6522 -2.8546 9 6 3.5983 2.8154 -3.8114 10 1 2.6875 3.3275 -4.0848 11 6 4.8048 3.2266 -4.3371 12 7 4.8465 4.2420 -5.1717 13 14 6.3801 2.3413 -3.8637 14 1 6.6276 1.2283 -4.8152 15 1 7.5173 3.2950 -3.9110 16 1 6.2477 1.7966 -2.4886 17 16 1.2265 0.3339 -3.2744 18 8 1.7168 0.3202 -4.6080 19 8 -0.1223 0.6365 -2.9453 20 6 1.5553 -1.2633 -2.6069 21 7 0.8409 -1.8698 -1.6987 22 6 1.3869 -3.0655 -1.4321 23 6 2.4816 -3.2050 -2.2040 24 7 2.5884 -2.0624 -2.9500 25 1 3.2781 -1.8632 -3.6024 26 1 -0.3634 0.4538 -0.9220 27 1 -0.3633 -1.0255 0.0680 28 1 -0.3634 0.5715 0.8542 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6224 1.9755 0.8543 32 1 3.8745 0.9356 1.0092 33 1 3.9850 0.9243 -0.7673 34 1 3.7681 3.3942 -0.7966 35 1 3.6575 3.4057 0.9798 36 1 5.1635 2.8872 0.1848 37 1 1.9765 3.1619 -1.2962 38 1 0.5210 2.1394 -1.3593 39 1 4.1569 1.8780 -1.9775 40 1 3.9405 0.7609 -3.3463 41 1 5.6953 4.5310 -5.5418 42 1 1.0167 -3.7876 -0.7195 43 1 3.1470 -4.0553 -2.2299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:27 Heat of formation + Delta-G solvation = 9.465381 kcal Electronic energy + Delta-G solvation = -27247.532235 eV Core-core repulsion = 23650.238051 eV Total energy + Delta-G solvation = -3597.294184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24690 -38.34137 -36.87541 -35.43073 -34.07752 -32.80030 -32.29226 -31.70325 -29.81336 -28.57380 -26.33471 -24.76941 -22.72385 -22.07331 -21.61353 -21.37770 -19.72318 -19.65666 -17.81853 -17.22966 -16.98570 -15.91966 -15.63723 -15.46756 -14.90713 -14.46936 -14.25683 -14.15048 -13.84545 -13.55789 -13.48341 -12.83549 -12.55932 -12.36801 -12.16163 -11.98286 -11.73595 -11.66005 -11.48936 -11.42364 -11.26099 -11.08468 -10.85152 -10.71057 -10.57025 -10.34607 -10.20258 -10.17121 -9.97073 -9.88176 -9.70292 -9.57358 -8.85917 -8.66019 -8.16421 -6.15224 -4.14170 0.64907 1.53480 2.76875 2.94663 3.16287 3.20982 3.25149 3.50643 4.05585 4.28908 4.55487 4.92430 5.08440 5.12941 5.14396 5.21310 5.23845 5.34752 5.61542 5.68131 5.72870 5.85070 5.92622 5.95570 6.05151 6.16839 6.25035 6.34970 6.40665 6.41565 6.45354 6.49924 6.63286 6.69133 6.79474 6.83806 6.93970 6.99338 7.04497 7.27502 7.48913 7.64450 8.41315 8.91708 9.42995 10.98231 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.006914 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.795872 B = 4048.780700 C = 4495.213283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.161 4.161 6 C 0.120 3.880 7 N -0.960 5.960 8 C 0.210 3.790 9 C -0.528 4.528 10 H 0.082 0.918 11 C 0.077 3.923 12 N -0.891 5.891 13 Si 0.862 3.138 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.263 1.263 17 S 2.704 3.296 18 O -0.932 6.932 19 O -0.936 6.936 20 C -0.342 4.342 21 N -0.378 5.378 22 C -0.041 4.041 23 C -0.012 4.012 24 N -0.513 5.513 25 H 0.431 0.569 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.265 0.735 42 H 0.178 0.822 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -12.247 10.538 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C -0.129 4.129 4 C -0.161 4.161 5 C -0.218 4.218 6 C -0.006 4.006 7 N -0.800 5.800 8 C 0.087 3.913 9 C -0.567 4.567 10 H 0.100 0.900 11 C -0.126 4.126 12 N -0.529 5.529 13 Si 0.688 3.312 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.187 1.187 17 S 2.783 3.217 18 O -0.921 6.921 19 O -0.925 6.925 20 C -0.678 4.678 21 N -0.099 5.099 22 C -0.194 4.194 23 C -0.152 4.152 24 N -0.115 5.115 25 H 0.271 0.729 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.195 0.805 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.523 -11.646 10.116 15.824 hybrid contribution 2.540 -1.416 0.056 2.908 sum -0.984 -13.062 10.172 16.585 Atomic orbital electron populations 1.22009 0.94923 1.02225 1.02390 1.22117 0.97207 0.95726 1.02467 1.21734 0.95847 0.96970 0.98307 1.21738 0.95347 0.97649 1.01398 1.21937 1.00359 0.96751 1.02769 1.21518 0.98910 0.96964 0.83215 1.57138 1.26227 1.52235 1.44400 1.19910 0.77351 0.96985 0.97036 1.21329 0.95771 1.13947 1.25663 0.90030 1.24815 0.98504 0.94749 0.94563 1.69876 1.26260 1.26192 1.30545 0.87083 0.84180 0.80331 0.79570 1.20016 1.20782 1.18742 1.02416 0.73893 0.71793 0.73588 1.93653 1.81038 1.85723 1.31688 1.93514 1.32674 1.82173 1.84166 1.37776 0.96679 1.21826 1.11545 1.70517 1.25466 1.05098 1.08824 1.22693 0.96171 0.96586 1.03990 1.23249 1.02455 0.92197 0.97319 1.43146 1.22474 1.14084 1.31812 0.72946 0.90070 0.91997 0.94485 0.90993 0.93195 0.90623 0.93262 0.90934 0.90231 0.93351 0.93433 0.88780 0.89233 0.92012 0.96757 0.92459 0.80507 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.10 37.16 0.30 -2.05 16 2 C -0.14 -2.00 4.37 -26.73 -0.12 -2.12 16 3 C -0.11 -1.57 2.27 -90.62 -0.21 -1.77 16 4 C -0.12 -1.83 4.85 -26.73 -0.13 -1.96 16 5 C -0.16 -2.41 8.69 37.16 0.32 -2.08 16 6 C 0.12 1.99 4.93 -4.04 -0.02 1.97 16 7 N -0.96 -18.30 2.19 -115.66 -0.25 -18.56 16 8 C 0.21 4.49 2.92 -5.20 -0.02 4.48 16 9 C -0.53 -13.97 9.94 -34.44 -0.34 -14.31 16 10 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 13 Si 0.86 19.70 27.47 -169.99 -4.67 15.03 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 17 S 2.70 52.20 5.33 -107.50 -0.57 51.63 16 18 O -0.93 -20.83 17.22 -57.17 -0.98 -21.81 16 19 O -0.94 -18.91 13.96 -57.17 -0.80 -19.71 16 20 C -0.34 -5.52 5.74 -90.38 -0.52 -6.03 16 21 N -0.38 -5.78 6.47 -13.85 -0.09 -5.87 16 22 C -0.04 -0.49 11.84 -17.81 -0.21 -0.70 16 23 C -0.01 -0.12 12.04 -16.56 -0.20 -0.32 16 24 N -0.51 -6.72 6.15 -13.23 -0.08 -6.80 16 25 H 0.43 4.99 8.96 -40.82 -0.37 4.62 16 26 H 0.08 1.36 3.95 -51.93 -0.21 1.15 16 27 H 0.06 0.91 7.14 -51.92 -0.37 0.54 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.11 2.66 -51.93 -0.14 0.97 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.17 5.22 -51.93 -0.27 0.90 16 34 H 0.08 1.36 5.49 -51.93 -0.28 1.07 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.09 1.58 6.42 -51.93 -0.33 1.25 16 38 H 0.09 1.45 5.52 -51.93 -0.29 1.17 16 39 H 0.06 1.25 2.52 -51.93 -0.13 1.12 16 40 H 0.01 0.30 7.26 -51.92 -0.38 -0.07 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -32.71 331.12 -8.65 -41.37 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.74 Total: 8.05 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.23 Total: -22.89 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.35 Total: -56.65 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.78 Total: -41.52 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.57 Total: 51.63 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.71 -8.65 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.831 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds