Wall clock time and date at job start Tue Mar 31 2020 10:41:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47062 * 2 1
4 4 C 1.52999 * 109.47203 * 176.21997 * 3 2 1
5 5 C 1.52997 * 109.46932 * 180.89077 * 4 3 2
6 6 C 1.53000 * 109.47178 * 296.22504 * 3 2 1
7 7 N 1.46507 * 109.46870 * 300.27723 * 6 3 2
8 8 C 1.46491 * 119.99837 * 278.58706 * 7 6 3
9 9 C 1.50698 * 109.47451 * 272.55668 * 8 7 6
10 10 H 1.08003 * 119.99647 * 0.02562 * 9 8 7
11 11 C 1.37877 * 120.00460 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00100 * 180.02562 * 11 9 8
13 13 Si 1.86798 * 120.00040 * 0.02562 * 11 9 8
14 14 H 1.48507 * 109.47233 * 89.99223 * 13 11 9
15 15 H 1.48497 * 109.47608 * 209.99734 * 13 11 9
16 16 H 1.48499 * 109.47065 * 329.99780 * 13 11 9
17 17 S 1.65602 * 119.99795 * 98.58520 * 7 6 3
18 18 O 1.42100 * 106.39803 * 151.50237 * 17 7 6
19 19 O 1.42097 * 106.40202 * 18.58715 * 17 7 6
20 20 C 1.76199 * 107.21788 * 265.04130 * 17 7 6
21 21 N 1.30502 * 125.64600 * 96.77482 * 20 17 7
22 22 C 1.34124 * 109.25535 * 180.02562 * 21 20 17
23 23 C 1.34669 * 108.02222 * 0.02562 * 22 21 20
24 24 N 1.35040 * 125.65512 * 276.79284 * 20 17 7
25 25 H 0.97001 * 126.39207 * 0.03080 * 24 20 17
26 26 H 1.09002 * 109.47478 * 63.79436 * 1 2 3
27 27 H 1.09010 * 109.46996 * 183.79191 * 1 2 3
28 28 H 1.09004 * 109.47332 * 303.78416 * 1 2 3
29 29 H 1.08997 * 109.47371 * 240.00064 * 2 1 3
30 30 H 1.09000 * 109.47091 * 120.00275 * 2 1 3
31 31 H 1.09007 * 109.46833 * 56.22513 * 3 2 1
32 32 H 1.09000 * 109.47441 * 300.89738 * 4 3 2
33 33 H 1.09004 * 109.46603 * 60.89304 * 4 3 2
34 34 H 1.08995 * 109.47424 * 299.99846 * 5 4 3
35 35 H 1.08995 * 109.47497 * 60.00701 * 5 4 3
36 36 H 1.09007 * 109.47000 * 180.02562 * 5 4 3
37 37 H 1.08994 * 109.46986 * 180.27935 * 6 3 2
38 38 H 1.08996 * 109.47087 * 60.27358 * 6 3 2
39 39 H 1.09003 * 109.47343 * 32.55961 * 8 7 6
40 40 H 1.09008 * 109.47317 * 152.55834 * 8 7 6
41 41 H 0.96998 * 119.99839 * 180.02562 * 12 11 9
42 42 H 1.07999 * 125.99189 * 179.72933 * 22 21 20
43 43 H 1.08000 * 126.59377 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5670 1.4436 0.0951
5 6 4.0755 2.8864 0.1175
6 6 1.6090 2.1358 -1.2940
7 7 2.1647 1.4155 -2.4424
8 6 3.5504 1.6522 -2.8546
9 6 3.5983 2.8154 -3.8114
10 1 2.6875 3.3275 -4.0848
11 6 4.8048 3.2266 -4.3371
12 7 4.8465 4.2420 -5.1717
13 14 6.3801 2.3413 -3.8637
14 1 6.6276 1.2283 -4.8152
15 1 7.5173 3.2950 -3.9110
16 1 6.2477 1.7966 -2.4886
17 16 1.2265 0.3339 -3.2744
18 8 1.7168 0.3202 -4.6080
19 8 -0.1223 0.6365 -2.9453
20 6 1.5553 -1.2633 -2.6069
21 7 0.8409 -1.8698 -1.6987
22 6 1.3869 -3.0655 -1.4321
23 6 2.4816 -3.2050 -2.2040
24 7 2.5884 -2.0624 -2.9500
25 1 3.2781 -1.8632 -3.6024
26 1 -0.3634 0.4538 -0.9220
27 1 -0.3633 -1.0255 0.0680
28 1 -0.3634 0.5715 0.8542
29 1 1.8933 -0.5138 -0.8899
30 1 1.8933 -0.5139 0.8900
31 1 1.6224 1.9755 0.8543
32 1 3.8745 0.9356 1.0092
33 1 3.9850 0.9243 -0.7673
34 1 3.7681 3.3942 -0.7966
35 1 3.6575 3.4057 0.9798
36 1 5.1635 2.8872 0.1848
37 1 1.9765 3.1619 -1.2962
38 1 0.5210 2.1394 -1.3593
39 1 4.1569 1.8780 -1.9775
40 1 3.9405 0.7609 -3.3463
41 1 5.6953 4.5310 -5.5418
42 1 1.0167 -3.7876 -0.7195
43 1 3.1470 -4.0553 -2.2299
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601337841.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:26
Heat of formation + Delta-G solvation = -14.336123 kcal
Electronic energy + Delta-G solvation = -27248.564346 eV
Core-core repulsion = 23650.238051 eV
Total energy + Delta-G solvation = -3598.326295 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-43.24240 -39.65441 -38.45531 -37.02184 -35.63669 -34.21985 -33.80813 -32.86379
-30.83441 -30.19783 -27.78481 -26.10636 -24.06732 -23.61103 -22.61105 -22.52208
-20.93720 -20.77190 -19.32099 -19.02913 -18.56111 -17.19111 -17.09316 -16.68350
-16.31303 -16.09837 -15.46808 -15.28907 -15.01820 -14.83179 -14.61140 -14.33344
-14.23902 -13.72683 -13.51067 -13.38636 -13.33270 -13.17664 -12.99059 -12.91768
-12.75492 -12.41155 -12.27115 -12.18822 -11.99082 -11.69322 -11.60668 -11.48928
-11.26171 -11.19397 -11.03044 -10.78566 -10.71116 -9.87596 -9.67597 -8.24867
-6.29210 -0.80245 0.48978 1.35438 1.37990 1.46971 1.77452 1.97479
2.16944 2.35821 2.63209 3.07985 3.31432 3.87610 3.92339 3.99407
4.06062 4.27202 4.32585 4.42467 4.54079 4.67528 4.69457 4.76554
4.81598 4.83430 4.85030 4.92857 5.02162 5.18051 5.21328 5.26765
5.39269 5.41869 5.46195 5.52728 5.57398 5.65492 5.67901 5.75738
5.87858 6.02217 6.34273 6.66488 6.74217 7.32021 8.92704
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.014313 B = 0.006914 C = 0.006227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.795872 B = 4048.780700 C = 4495.213283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.135 4.135
3 C -0.100 4.100
4 C -0.121 4.121
5 C -0.161 4.161
6 C 0.113 3.887
7 N -0.966 5.966
8 C 0.220 3.780
9 C -0.533 4.533
10 H 0.031 0.969
11 C 0.012 3.988
12 N -0.947 5.947
13 Si 0.928 3.072
14 H -0.266 1.266
15 H -0.283 1.283
16 H -0.225 1.225
17 S 2.714 3.286
18 O -0.978 6.978
19 O -0.959 6.959
20 C -0.378 4.378
21 N -0.389 5.389
22 C -0.055 4.055
23 C 0.025 3.975
24 N -0.512 5.512
25 H 0.436 0.564
26 H 0.056 0.944
27 H 0.061 0.939
28 H 0.050 0.950
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.096 0.904
32 H 0.073 0.927
33 H 0.058 0.942
34 H 0.049 0.951
35 H 0.067 0.933
36 H 0.050 0.950
37 H 0.084 0.916
38 H 0.087 0.913
39 H 0.084 0.916
40 H 0.026 0.974
41 H 0.266 0.734
42 H 0.210 0.790
43 H 0.237 0.763
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.648 -15.797 13.535 20.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.173 4.173
3 C -0.120 4.120
4 C -0.159 4.159
5 C -0.218 4.218
6 C -0.012 4.012
7 N -0.805 5.805
8 C 0.096 3.904
9 C -0.572 4.572
10 H 0.049 0.951
11 C -0.186 4.186
12 N -0.588 5.588
13 Si 0.750 3.250
14 H -0.191 1.191
15 H -0.209 1.209
16 H -0.148 1.148
17 S 2.800 3.200
18 O -0.968 6.968
19 O -0.948 6.948
20 C -0.716 4.716
21 N -0.112 5.112
22 C -0.210 4.210
23 C -0.116 4.116
24 N -0.116 5.116
25 H 0.277 0.723
26 H 0.075 0.925
27 H 0.080 0.920
28 H 0.069 0.931
29 H 0.085 0.915
30 H 0.084 0.916
31 H 0.114 0.886
32 H 0.091 0.909
33 H 0.077 0.923
34 H 0.068 0.932
35 H 0.086 0.914
36 H 0.069 0.931
37 H 0.102 0.898
38 H 0.105 0.895
39 H 0.101 0.899
40 H 0.044 0.956
41 H 0.075 0.925
42 H 0.226 0.774
43 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges -1.851 -15.119 13.102 20.091
hybrid contribution 1.876 -0.430 -0.840 2.100
sum 0.025 -15.549 12.262 19.802
Atomic orbital electron populations
1.21951 0.95423 1.02194 1.01698 1.22097 0.96729 0.95527 1.02933
1.21682 0.96100 0.97103 0.97141 1.21707 0.95009 0.97285 1.01865
1.21921 1.00704 0.97050 1.02169 1.21674 0.98764 0.96779 0.83973
1.56996 1.25148 1.53406 1.44937 1.19724 0.79111 0.95112 0.96483
1.21621 0.94010 1.15139 1.26416 0.95113 1.25807 1.02807 0.95560
0.94410 1.70064 1.27342 1.28647 1.32710 0.86012 0.78541 0.79115
0.81334 1.19077 1.20852 1.14778 1.01403 0.73255 0.72584 0.72732
1.93590 1.81574 1.86947 1.34685 1.93482 1.33716 1.83280 1.84302
1.36381 0.99553 1.21220 1.14442 1.70461 1.25726 1.06599 1.08385
1.23387 0.96628 0.95943 1.04998 1.24141 1.01725 0.91662 0.94078
1.43268 1.21775 1.14521 1.32018 0.72312 0.92468 0.91967 0.93126
0.91463 0.91628 0.88631 0.90879 0.92349 0.93211 0.91368 0.93054
0.89789 0.89491 0.89903 0.95597 0.92503 0.77356 0.74692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.37 8.10 71.98 0.58 -3.78 16
2 C -0.14 -3.59 4.37 30.59 0.13 -3.46 16
3 C -0.10 -2.70 2.27 -10.79 -0.02 -2.72 16
4 C -0.12 -3.21 4.85 30.59 0.15 -3.06 16
5 C -0.16 -4.48 8.69 71.98 0.63 -3.85 16
6 C 0.11 3.83 4.93 86.38 0.43 4.25 16
7 N -0.97 -37.58 2.19 -519.85 -1.14 -38.72 16
8 C 0.22 9.42 2.92 85.63 0.25 9.67 16
9 C -0.53 -29.48 9.94 25.60 0.25 -29.23 16
10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16
11 C 0.01 0.67 5.47 84.66 0.46 1.14 16
12 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16
13 Si 0.93 40.19 27.47 68.60 1.88 42.08 16
14 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
16 H -0.23 -8.31 6.54 99.48 0.65 -7.66 16
17 S 2.71 107.99 5.33 -56.49 -0.30 107.69 16
18 O -0.98 -45.85 17.22 -128.00 -2.20 -48.06 16
19 O -0.96 -40.52 13.96 -128.00 -1.79 -42.31 16
20 C -0.38 -11.68 5.74 180.26 1.03 -10.64 16
21 N -0.39 -11.04 6.47 -197.74 -1.28 -12.31 16
22 C -0.06 -1.08 11.84 83.52 0.99 -0.09 16
23 C 0.03 0.39 12.04 83.09 1.00 1.39 16
24 N -0.51 -11.95 6.15 -195.76 -1.20 -13.15 16
25 H 0.44 9.05 8.96 -92.71 -0.83 8.22 16
26 H 0.06 1.91 3.95 -2.39 -0.01 1.90 16
27 H 0.06 1.71 7.14 -2.38 -0.02 1.70 16
28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16
29 H 0.07 1.91 2.66 -2.39 -0.01 1.91 16
30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
31 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16
32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.06 1.71 5.22 -2.38 -0.01 1.70 16
34 H 0.05 1.68 5.49 -2.39 -0.01 1.67 16
35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
36 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16
37 H 0.08 2.96 6.42 -2.39 -0.02 2.94 16
38 H 0.09 2.95 5.52 -2.39 -0.01 2.94 16
39 H 0.08 3.24 2.52 -2.39 -0.01 3.23 16
40 H 0.03 1.06 7.26 -2.38 -0.02 1.05 16
41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16
42 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16
43 H 0.24 1.11 8.06 -2.91 -0.02 1.08 16
Total: -1.00 -76.43 331.12 0.32 -76.11
By element:
Atomic # 1 Polarization: 26.97 SS G_CDS: 0.17 Total: 27.13 kcal
Atomic # 6 Polarization: -46.26 SS G_CDS: 5.88 Total: -40.38 kcal
Atomic # 7 Polarization: -118.94 SS G_CDS: -3.32 Total: -122.27 kcal
Atomic # 8 Polarization: -86.37 SS G_CDS: -3.99 Total: -90.37 kcal
Atomic # 14 Polarization: 40.19 SS G_CDS: 1.88 Total: 42.08 kcal
Atomic # 16 Polarization: 107.99 SS G_CDS: -0.30 Total: 107.69 kcal
Total: -76.43 0.32 -76.11 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601337841.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.776 kcal
(2) G-P(sol) polarization free energy of solvation -76.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds