Wall clock time and date at job start Tue Mar 31 2020 10:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.52999 * 109.47203 * 176.21997 * 3 2 1 5 5 C 1.52997 * 109.46932 * 180.89077 * 4 3 2 6 6 C 1.53000 * 109.47178 * 296.22504 * 3 2 1 7 7 N 1.46507 * 109.46870 * 300.27723 * 6 3 2 8 8 C 1.46491 * 119.99837 * 278.58706 * 7 6 3 9 9 C 1.50698 * 109.47451 * 272.55668 * 8 7 6 10 10 H 1.08003 * 119.99647 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00460 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00100 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00040 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47233 * 89.99223 * 13 11 9 15 15 H 1.48497 * 109.47608 * 209.99734 * 13 11 9 16 16 H 1.48499 * 109.47065 * 329.99780 * 13 11 9 17 17 S 1.65602 * 119.99795 * 98.58520 * 7 6 3 18 18 O 1.42100 * 106.39803 * 151.50237 * 17 7 6 19 19 O 1.42097 * 106.40202 * 18.58715 * 17 7 6 20 20 C 1.76199 * 107.21788 * 265.04130 * 17 7 6 21 21 N 1.30502 * 125.64600 * 96.77482 * 20 17 7 22 22 C 1.34124 * 109.25535 * 180.02562 * 21 20 17 23 23 C 1.34669 * 108.02222 * 0.02562 * 22 21 20 24 24 N 1.35040 * 125.65512 * 276.79284 * 20 17 7 25 25 H 0.97001 * 126.39207 * 0.03080 * 24 20 17 26 26 H 1.09002 * 109.47478 * 63.79436 * 1 2 3 27 27 H 1.09010 * 109.46996 * 183.79191 * 1 2 3 28 28 H 1.09004 * 109.47332 * 303.78416 * 1 2 3 29 29 H 1.08997 * 109.47371 * 240.00064 * 2 1 3 30 30 H 1.09000 * 109.47091 * 120.00275 * 2 1 3 31 31 H 1.09007 * 109.46833 * 56.22513 * 3 2 1 32 32 H 1.09000 * 109.47441 * 300.89738 * 4 3 2 33 33 H 1.09004 * 109.46603 * 60.89304 * 4 3 2 34 34 H 1.08995 * 109.47424 * 299.99846 * 5 4 3 35 35 H 1.08995 * 109.47497 * 60.00701 * 5 4 3 36 36 H 1.09007 * 109.47000 * 180.02562 * 5 4 3 37 37 H 1.08994 * 109.46986 * 180.27935 * 6 3 2 38 38 H 1.08996 * 109.47087 * 60.27358 * 6 3 2 39 39 H 1.09003 * 109.47343 * 32.55961 * 8 7 6 40 40 H 1.09008 * 109.47317 * 152.55834 * 8 7 6 41 41 H 0.96998 * 119.99839 * 180.02562 * 12 11 9 42 42 H 1.07999 * 125.99189 * 179.72933 * 22 21 20 43 43 H 1.08000 * 126.59377 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.4436 0.0951 5 6 4.0755 2.8864 0.1175 6 6 1.6090 2.1358 -1.2940 7 7 2.1647 1.4155 -2.4424 8 6 3.5504 1.6522 -2.8546 9 6 3.5983 2.8154 -3.8114 10 1 2.6875 3.3275 -4.0848 11 6 4.8048 3.2266 -4.3371 12 7 4.8465 4.2420 -5.1717 13 14 6.3801 2.3413 -3.8637 14 1 6.6276 1.2283 -4.8152 15 1 7.5173 3.2950 -3.9110 16 1 6.2477 1.7966 -2.4886 17 16 1.2265 0.3339 -3.2744 18 8 1.7168 0.3202 -4.6080 19 8 -0.1223 0.6365 -2.9453 20 6 1.5553 -1.2633 -2.6069 21 7 0.8409 -1.8698 -1.6987 22 6 1.3869 -3.0655 -1.4321 23 6 2.4816 -3.2050 -2.2040 24 7 2.5884 -2.0624 -2.9500 25 1 3.2781 -1.8632 -3.6024 26 1 -0.3634 0.4538 -0.9220 27 1 -0.3633 -1.0255 0.0680 28 1 -0.3634 0.5715 0.8542 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6224 1.9755 0.8543 32 1 3.8745 0.9356 1.0092 33 1 3.9850 0.9243 -0.7673 34 1 3.7681 3.3942 -0.7966 35 1 3.6575 3.4057 0.9798 36 1 5.1635 2.8872 0.1848 37 1 1.9765 3.1619 -1.2962 38 1 0.5210 2.1394 -1.3593 39 1 4.1569 1.8780 -1.9775 40 1 3.9405 0.7609 -3.3463 41 1 5.6953 4.5310 -5.5418 42 1 1.0167 -3.7876 -0.7195 43 1 3.1470 -4.0553 -2.2299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:26 Heat of formation + Delta-G solvation = -14.336123 kcal Electronic energy + Delta-G solvation = -27248.564346 eV Core-core repulsion = 23650.238051 eV Total energy + Delta-G solvation = -3598.326295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24240 -39.65441 -38.45531 -37.02184 -35.63669 -34.21985 -33.80813 -32.86379 -30.83441 -30.19783 -27.78481 -26.10636 -24.06732 -23.61103 -22.61105 -22.52208 -20.93720 -20.77190 -19.32099 -19.02913 -18.56111 -17.19111 -17.09316 -16.68350 -16.31303 -16.09837 -15.46808 -15.28907 -15.01820 -14.83179 -14.61140 -14.33344 -14.23902 -13.72683 -13.51067 -13.38636 -13.33270 -13.17664 -12.99059 -12.91768 -12.75492 -12.41155 -12.27115 -12.18822 -11.99082 -11.69322 -11.60668 -11.48928 -11.26171 -11.19397 -11.03044 -10.78566 -10.71116 -9.87596 -9.67597 -8.24867 -6.29210 -0.80245 0.48978 1.35438 1.37990 1.46971 1.77452 1.97479 2.16944 2.35821 2.63209 3.07985 3.31432 3.87610 3.92339 3.99407 4.06062 4.27202 4.32585 4.42467 4.54079 4.67528 4.69457 4.76554 4.81598 4.83430 4.85030 4.92857 5.02162 5.18051 5.21328 5.26765 5.39269 5.41869 5.46195 5.52728 5.57398 5.65492 5.67901 5.75738 5.87858 6.02217 6.34273 6.66488 6.74217 7.32021 8.92704 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014313 B = 0.006914 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.795872 B = 4048.780700 C = 4495.213283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.121 4.121 5 C -0.161 4.161 6 C 0.113 3.887 7 N -0.966 5.966 8 C 0.220 3.780 9 C -0.533 4.533 10 H 0.031 0.969 11 C 0.012 3.988 12 N -0.947 5.947 13 Si 0.928 3.072 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.225 1.225 17 S 2.714 3.286 18 O -0.978 6.978 19 O -0.959 6.959 20 C -0.378 4.378 21 N -0.389 5.389 22 C -0.055 4.055 23 C 0.025 3.975 24 N -0.512 5.512 25 H 0.436 0.564 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.210 0.790 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -15.797 13.535 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.218 4.218 6 C -0.012 4.012 7 N -0.805 5.805 8 C 0.096 3.904 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.750 3.250 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.148 1.148 17 S 2.800 3.200 18 O -0.968 6.968 19 O -0.948 6.948 20 C -0.716 4.716 21 N -0.112 5.112 22 C -0.210 4.210 23 C -0.116 4.116 24 N -0.116 5.116 25 H 0.277 0.723 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.226 0.774 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.851 -15.119 13.102 20.091 hybrid contribution 1.876 -0.430 -0.840 2.100 sum 0.025 -15.549 12.262 19.802 Atomic orbital electron populations 1.21951 0.95423 1.02194 1.01698 1.22097 0.96729 0.95527 1.02933 1.21682 0.96100 0.97103 0.97141 1.21707 0.95009 0.97285 1.01865 1.21921 1.00704 0.97050 1.02169 1.21674 0.98764 0.96779 0.83973 1.56996 1.25148 1.53406 1.44937 1.19724 0.79111 0.95112 0.96483 1.21621 0.94010 1.15139 1.26416 0.95113 1.25807 1.02807 0.95560 0.94410 1.70064 1.27342 1.28647 1.32710 0.86012 0.78541 0.79115 0.81334 1.19077 1.20852 1.14778 1.01403 0.73255 0.72584 0.72732 1.93590 1.81574 1.86947 1.34685 1.93482 1.33716 1.83280 1.84302 1.36381 0.99553 1.21220 1.14442 1.70461 1.25726 1.06599 1.08385 1.23387 0.96628 0.95943 1.04998 1.24141 1.01725 0.91662 0.94078 1.43268 1.21775 1.14521 1.32018 0.72312 0.92468 0.91967 0.93126 0.91463 0.91628 0.88631 0.90879 0.92349 0.93211 0.91368 0.93054 0.89789 0.89491 0.89903 0.95597 0.92503 0.77356 0.74692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 8.10 71.98 0.58 -3.78 16 2 C -0.14 -3.59 4.37 30.59 0.13 -3.46 16 3 C -0.10 -2.70 2.27 -10.79 -0.02 -2.72 16 4 C -0.12 -3.21 4.85 30.59 0.15 -3.06 16 5 C -0.16 -4.48 8.69 71.98 0.63 -3.85 16 6 C 0.11 3.83 4.93 86.38 0.43 4.25 16 7 N -0.97 -37.58 2.19 -519.85 -1.14 -38.72 16 8 C 0.22 9.42 2.92 85.63 0.25 9.67 16 9 C -0.53 -29.48 9.94 25.60 0.25 -29.23 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 11 C 0.01 0.67 5.47 84.66 0.46 1.14 16 12 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 13 Si 0.93 40.19 27.47 68.60 1.88 42.08 16 14 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.23 -8.31 6.54 99.48 0.65 -7.66 16 17 S 2.71 107.99 5.33 -56.49 -0.30 107.69 16 18 O -0.98 -45.85 17.22 -128.00 -2.20 -48.06 16 19 O -0.96 -40.52 13.96 -128.00 -1.79 -42.31 16 20 C -0.38 -11.68 5.74 180.26 1.03 -10.64 16 21 N -0.39 -11.04 6.47 -197.74 -1.28 -12.31 16 22 C -0.06 -1.08 11.84 83.52 0.99 -0.09 16 23 C 0.03 0.39 12.04 83.09 1.00 1.39 16 24 N -0.51 -11.95 6.15 -195.76 -1.20 -13.15 16 25 H 0.44 9.05 8.96 -92.71 -0.83 8.22 16 26 H 0.06 1.91 3.95 -2.39 -0.01 1.90 16 27 H 0.06 1.71 7.14 -2.38 -0.02 1.70 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.91 2.66 -2.39 -0.01 1.91 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.71 5.22 -2.38 -0.01 1.70 16 34 H 0.05 1.68 5.49 -2.39 -0.01 1.67 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 2.96 6.42 -2.39 -0.02 2.94 16 38 H 0.09 2.95 5.52 -2.39 -0.01 2.94 16 39 H 0.08 3.24 2.52 -2.39 -0.01 3.23 16 40 H 0.03 1.06 7.26 -2.38 -0.02 1.05 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.24 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -76.43 331.12 0.32 -76.11 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.17 Total: 27.13 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 5.88 Total: -40.38 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -3.32 Total: -122.27 kcal Atomic # 8 Polarization: -86.37 SS G_CDS: -3.99 Total: -90.37 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.88 Total: 42.08 kcal Atomic # 16 Polarization: 107.99 SS G_CDS: -0.30 Total: 107.69 kcal Total: -76.43 0.32 -76.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.776 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds