Wall clock time and date at job start Tue Mar 31 2020 11:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47109 * 2 1 4 4 C 1.50702 * 109.46778 * 239.99830 * 2 1 3 5 5 H 1.07997 * 120.00005 * 239.99838 * 4 2 1 6 6 C 1.37877 * 120.00158 * 60.00205 * 4 2 1 7 7 N 1.31514 * 119.99700 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00314 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46925 * 119.99815 * 8 6 4 11 11 H 1.48495 * 109.47285 * 240.00250 * 8 6 4 12 12 C 1.53001 * 109.47026 * 120.00073 * 2 1 3 13 13 N 1.46496 * 109.46952 * 299.99966 * 12 2 1 14 14 C 1.34783 * 119.99755 * 180.02562 * 13 12 2 15 15 O 1.21533 * 120.00186 * 359.97438 * 14 13 12 16 16 C 1.47991 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.40422 * 119.71371 * 0.02562 * 16 14 13 18 18 C 1.36067 * 120.77867 * 180.02562 * 17 16 14 19 19 C 1.40090 * 119.86364 * 359.97438 * 18 17 16 20 20 C 1.41584 * 121.89091 * 179.97438 * 19 18 17 21 21 O 1.35279 * 120.87058 * 0.02562 * 20 19 18 22 22 N 1.32319 * 118.25116 * 180.29854 * 20 19 18 23 23 C 1.32438 * 121.53246 * 359.43904 * 22 20 19 24 24 N 1.31118 * 122.92427 * 0.58106 * 23 22 20 25 25 C 1.34115 * 120.44772 * 359.71927 * 24 23 22 26 26 C 1.38548 * 119.71814 * 180.02562 * 16 14 13 27 27 H 1.09003 * 109.46706 * 299.99748 * 1 2 3 28 28 H 1.08994 * 109.47433 * 60.00145 * 1 2 3 29 29 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47184 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47386 * 299.99717 * 3 2 1 32 32 H 1.08995 * 109.47264 * 60.00257 * 3 2 1 33 33 H 0.97003 * 119.99835 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47065 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47421 * 60.00005 * 12 2 1 36 36 H 0.97000 * 120.00661 * 359.97438 * 13 12 2 37 37 H 1.08000 * 119.61256 * 0.03909 * 17 16 14 38 38 H 1.08005 * 120.07102 * 179.97438 * 18 17 16 39 39 H 0.96700 * 114.00116 * 90.00559 * 21 20 19 40 40 H 1.07991 * 118.53561 * 180.27733 * 23 22 20 41 41 H 1.08001 * 120.31509 * 359.95094 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1472 -2.2865 -3.6039 10 1 1.1676 -1.5866 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5764 -1.4790 3.7810 16 6 1.3849 0.2071 4.8779 17 6 0.5775 1.3479 4.7421 18 6 0.1130 2.0067 5.8383 19 6 0.4403 1.5455 7.1200 20 6 -0.0190 2.1979 8.2896 21 8 -0.7986 3.3005 8.2087 22 7 0.3389 1.7040 9.4638 23 6 1.0969 0.6221 9.5582 24 7 1.5513 -0.0232 8.5112 25 6 1.2533 0.3957 7.2725 26 6 1.7240 -0.2708 6.1334 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7490 1.2493 36 1 0.9943 0.7582 2.3564 37 1 0.3221 1.7066 3.7560 38 1 -0.5069 2.8833 5.7206 39 1 -1.7466 3.1112 8.1864 40 1 1.3563 0.2581 10.5413 41 1 2.3446 -1.1490 6.2330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603062832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:29 Heat of formation + Delta-G solvation = -9.816835 kcal Electronic energy + Delta-G solvation = -25278.477355 eV Core-core repulsion = 21544.903080 eV Total energy + Delta-G solvation = -3733.574275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81734 -39.78400 -38.24611 -37.52271 -36.42790 -33.76106 -33.36632 -31.88550 -30.88928 -30.40111 -26.47024 -25.81129 -25.42770 -24.89063 -24.40868 -22.59100 -21.19617 -19.61800 -19.13594 -18.65126 -18.17936 -17.05032 -16.69874 -15.96398 -15.78746 -15.16175 -14.96203 -14.80575 -14.63869 -14.34991 -14.28554 -13.68568 -13.26645 -13.04641 -13.01384 -12.84133 -12.34887 -12.29516 -12.05124 -11.47457 -11.27550 -11.20982 -10.97434 -10.94073 -10.71513 -10.47433 -10.26876 -9.89363 -9.72426 -9.68845 -9.61394 -9.38016 -8.85967 -8.74170 -8.57090 -8.41058 -6.08265 -4.18311 -0.31414 0.13778 1.34088 2.23549 2.80881 3.23725 3.25206 3.30108 3.33059 3.38665 3.73004 3.78821 3.92152 4.17274 4.35110 4.44746 4.60161 4.73047 4.92005 5.03875 5.19029 5.30524 5.53990 5.73895 5.80707 5.92981 6.08369 6.19057 6.22727 6.41565 6.56493 6.65328 6.72331 6.83063 6.84515 6.86930 6.93231 7.26608 7.47495 7.63261 7.67692 7.84860 7.93345 8.06241 8.30238 8.45790 8.82469 9.48035 10.93297 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.002607 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.432509 B =10736.845932 C =11433.678444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.543 3.457 15 O -0.538 6.538 16 C -0.080 4.080 17 C -0.093 4.093 18 C -0.074 4.074 19 C -0.163 4.163 20 C 0.407 3.593 21 O -0.469 6.469 22 N -0.546 5.546 23 C 0.318 3.682 24 N -0.503 5.503 25 C 0.163 3.837 26 C -0.041 4.041 27 H 0.005 0.995 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.413 0.587 40 H 0.203 0.797 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 4.702 19.042 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.328 3.672 15 O -0.416 6.416 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.094 4.094 19 C -0.169 4.169 20 C 0.205 3.795 21 O -0.277 6.277 22 N -0.271 5.271 23 C 0.029 3.971 24 N -0.217 5.217 25 C 0.037 3.963 26 C -0.061 4.061 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.274 0.726 40 H 0.219 0.781 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.255 3.985 19.751 20.593 hybrid contribution -0.665 0.211 -1.628 1.771 sum -4.920 4.196 18.123 19.242 Atomic orbital electron populations 1.21849 0.97712 0.99304 1.00083 1.18375 0.92834 0.92792 0.90515 1.21848 0.98747 0.98288 1.00094 1.21007 1.31516 1.12148 0.89787 0.92297 1.24878 0.94813 0.94908 0.98900 1.69804 1.36650 1.22773 1.23208 0.86506 0.78662 0.79763 0.82917 1.19730 1.21044 1.21036 1.21834 0.98460 0.95951 0.82981 1.46283 1.51919 1.31557 1.05820 1.18158 0.81256 0.84455 0.83368 1.90773 1.38118 1.26032 1.86718 1.20336 0.98049 0.95979 0.94305 1.21186 0.95954 0.94087 0.99965 1.20778 0.99047 0.99594 0.90015 1.19718 1.03497 0.98061 0.95663 1.19641 0.89139 0.83609 0.87079 1.84625 1.22086 1.26100 1.94919 1.67891 1.16987 1.13766 1.28492 1.24743 0.88163 0.85910 0.98255 1.68759 1.22335 1.32304 0.98333 1.18779 0.93612 0.91723 0.92228 1.21184 0.97238 0.99207 0.88478 0.97629 0.89457 0.95304 0.95292 0.89462 0.97608 0.93008 0.92260 0.92259 0.76501 0.84179 0.83659 0.72598 0.78074 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.83 8.08 37.15 0.30 -2.53 16 4 C -0.51 -12.82 8.01 -34.44 -0.28 -13.09 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.90 9.35 55.43 0.52 -22.38 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.13 2.62 4.50 -4.04 -0.02 2.60 16 13 N -0.71 -11.77 4.91 -61.20 -0.30 -12.07 16 14 C 0.54 9.04 7.77 -12.26 -0.10 8.95 16 15 O -0.54 -10.80 16.30 5.34 0.09 -10.71 16 16 C -0.08 -1.06 5.87 -104.96 -0.62 -1.68 16 17 C -0.09 -0.98 9.45 -39.54 -0.37 -1.35 16 18 C -0.07 -0.67 9.58 -39.67 -0.38 -1.05 16 19 C -0.16 -1.73 5.76 -106.63 -0.61 -2.35 16 20 C 0.41 3.95 7.89 -16.07 -0.13 3.82 16 21 O -0.47 -3.30 12.91 -17.53 -0.23 -3.53 16 22 N -0.55 -5.68 10.42 -14.23 -0.15 -5.83 16 23 C 0.32 3.10 12.22 -92.17 -1.13 1.98 16 24 N -0.50 -5.99 10.44 -12.65 -0.13 -6.12 16 25 C 0.16 2.01 6.61 -84.86 -0.56 1.45 16 26 C -0.04 -0.54 9.58 -38.76 -0.37 -0.92 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.40 5.82 4.15 -40.82 -0.17 5.65 16 37 H 0.14 1.25 6.34 -52.49 -0.33 0.91 16 38 H 0.15 0.91 7.70 -52.48 -0.40 0.51 16 39 H 0.41 0.70 9.06 45.56 0.41 1.12 16 40 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.16 2.16 7.61 -52.49 -0.40 1.76 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -30.97 341.65 -8.09 -39.07 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.89 Total: 5.12 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.13 Total: -3.94 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.06 Total: -46.40 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.14 Total: -14.24 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.97 -8.09 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603062832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.250 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds