Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47109 * 2 1 4 4 C 1.50702 * 109.46778 * 239.99830 * 2 1 3 5 5 H 1.07997 * 120.00005 * 239.99838 * 4 2 1 6 6 C 1.37877 * 120.00158 * 60.00205 * 4 2 1 7 7 N 1.31514 * 119.99700 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00314 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46925 * 119.99815 * 8 6 4 11 11 H 1.48495 * 109.47285 * 240.00250 * 8 6 4 12 12 C 1.53001 * 109.47026 * 120.00073 * 2 1 3 13 13 N 1.46496 * 109.46952 * 299.99966 * 12 2 1 14 14 C 1.34783 * 119.99755 * 180.02562 * 13 12 2 15 15 O 1.21533 * 120.00186 * 359.97438 * 14 13 12 16 16 C 1.47991 * 120.00074 * 179.97438 * 14 13 12 17 17 C 1.40422 * 119.71371 * 0.02562 * 16 14 13 18 18 C 1.36067 * 120.77867 * 180.02562 * 17 16 14 19 19 C 1.40090 * 119.86364 * 359.97438 * 18 17 16 20 20 C 1.41584 * 121.89091 * 179.97438 * 19 18 17 21 21 O 1.35279 * 120.87058 * 0.02562 * 20 19 18 22 22 N 1.32319 * 118.25116 * 180.29854 * 20 19 18 23 23 C 1.32438 * 121.53246 * 359.43904 * 22 20 19 24 24 N 1.31118 * 122.92427 * 0.58106 * 23 22 20 25 25 C 1.34115 * 120.44772 * 359.71927 * 24 23 22 26 26 C 1.38548 * 119.71814 * 180.02562 * 16 14 13 27 27 H 1.09003 * 109.46706 * 299.99748 * 1 2 3 28 28 H 1.08994 * 109.47433 * 60.00145 * 1 2 3 29 29 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47184 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47386 * 299.99717 * 3 2 1 32 32 H 1.08995 * 109.47264 * 60.00257 * 3 2 1 33 33 H 0.97003 * 119.99835 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47065 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47421 * 60.00005 * 12 2 1 36 36 H 0.97000 * 120.00661 * 359.97438 * 13 12 2 37 37 H 1.08000 * 119.61256 * 0.03909 * 17 16 14 38 38 H 1.08005 * 120.07102 * 179.97438 * 18 17 16 39 39 H 0.96700 * 114.00116 * 90.00559 * 21 20 19 40 40 H 1.07991 * 118.53561 * 180.27733 * 23 22 20 41 41 H 1.08001 * 120.31509 * 359.95094 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1472 -2.2865 -3.6039 10 1 1.1676 -1.5866 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5764 -1.4790 3.7810 16 6 1.3849 0.2071 4.8779 17 6 0.5775 1.3479 4.7421 18 6 0.1130 2.0067 5.8383 19 6 0.4403 1.5455 7.1200 20 6 -0.0190 2.1979 8.2896 21 8 -0.7986 3.3005 8.2087 22 7 0.3389 1.7040 9.4638 23 6 1.0969 0.6221 9.5582 24 7 1.5513 -0.0232 8.5112 25 6 1.2533 0.3957 7.2725 26 6 1.7240 -0.2708 6.1334 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 0.7081 1.1608 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7490 1.2493 36 1 0.9943 0.7582 2.3564 37 1 0.3221 1.7066 3.7560 38 1 -0.5069 2.8833 5.7206 39 1 -1.7466 3.1112 8.1864 40 1 1.3563 0.2581 10.5413 41 1 2.3446 -1.1490 6.2330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603062832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = -32.144785 kcal Electronic energy + Delta-G solvation = -25279.445568 eV Core-core repulsion = 21544.903080 eV Total energy + Delta-G solvation = -3734.542487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.61214 -41.05779 -38.95961 -38.50145 -37.99726 -35.17352 -34.34223 -33.10970 -32.32138 -31.27922 -27.82063 -27.54595 -27.21385 -25.71675 -25.64750 -23.45800 -22.35709 -20.68268 -20.47014 -19.75997 -18.98959 -18.17022 -17.70186 -17.49760 -16.88591 -16.55812 -16.42460 -16.17312 -15.53121 -15.26556 -15.13912 -14.87515 -14.78290 -14.59407 -14.18063 -13.99649 -13.59519 -13.33158 -13.15555 -13.11116 -12.86065 -12.69297 -12.57504 -12.24580 -12.13498 -11.97469 -11.70468 -11.48125 -11.37887 -11.07525 -10.69106 -10.56041 -10.46637 -10.39151 -10.00992 -9.53982 -8.02284 -6.17241 -1.13370 -0.68099 0.50903 1.32003 1.41577 1.46528 1.55109 2.05804 2.10635 2.23000 2.47456 2.84309 3.01504 3.10485 3.21887 3.38756 3.56944 3.74295 3.91476 4.07720 4.24585 4.40771 4.50453 4.58022 4.67864 4.72483 4.91572 4.99597 5.03350 5.06446 5.10487 5.14931 5.20721 5.29980 5.37044 5.54332 5.68894 5.69020 5.79347 6.17358 6.22079 6.44245 6.46015 6.51929 6.86687 6.92833 7.12644 7.50552 8.96727 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031438 B = 0.002607 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.432509 B =10736.845932 C =11433.678444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.145 3.855 13 N -0.696 5.696 14 C 0.544 3.456 15 O -0.579 6.579 16 C -0.085 4.085 17 C -0.099 4.099 18 C -0.050 4.050 19 C -0.172 4.172 20 C 0.421 3.579 21 O -0.467 6.467 22 N -0.559 5.559 23 C 0.324 3.676 24 N -0.532 5.532 25 C 0.149 3.851 26 C -0.056 4.056 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.260 0.740 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.411 0.589 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.438 0.562 40 H 0.234 0.766 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 6.723 20.487 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.051 3.949 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.022 3.978 13 N -0.348 5.348 14 C 0.332 3.668 15 O -0.461 6.461 16 C -0.091 4.091 17 C -0.118 4.118 18 C -0.070 4.070 19 C -0.178 4.178 20 C 0.219 3.781 21 O -0.279 6.279 22 N -0.285 5.285 23 C 0.036 3.964 24 N -0.248 5.248 25 C 0.023 3.977 26 C -0.076 4.076 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.250 0.750 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.304 0.696 40 H 0.250 0.750 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.878 6.033 21.196 22.808 hybrid contribution -0.224 -0.358 -1.943 1.989 sum -6.103 5.675 19.253 20.979 Atomic orbital electron populations 1.21698 0.96880 0.98847 1.00648 1.18365 0.93435 0.93067 0.90039 1.21700 0.98024 0.97755 1.00636 1.21295 1.31635 1.12137 0.91567 0.93793 1.25405 0.95171 0.95589 1.00832 1.69898 1.36954 1.23227 1.23537 0.85747 0.78121 0.78737 0.80428 1.20151 1.20766 1.20806 1.21391 0.97360 0.95315 0.83778 1.46027 1.52079 1.31755 1.04918 1.18648 0.80221 0.83857 0.84109 1.90749 1.39965 1.28009 1.87339 1.20030 0.99539 0.97196 0.92322 1.21320 0.95747 0.93193 1.01515 1.21147 0.97583 0.99607 0.88613 1.19893 1.03314 0.97672 0.96898 1.19715 0.88518 0.83301 0.86549 1.84589 1.23870 1.24718 1.94717 1.68030 1.17561 1.14207 1.28744 1.25408 0.86798 0.85271 0.98945 1.68778 1.23839 1.33468 0.98705 1.18816 0.94268 0.92502 0.92096 1.21057 0.97977 0.99305 0.89264 0.94068 0.91755 0.96246 0.96315 0.91749 0.94102 0.93022 0.93912 0.93820 0.74980 0.82211 0.79897 0.69636 0.75002 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.14 8.01 25.60 0.21 -26.93 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -46.36 9.35 21.45 0.20 -46.16 16 8 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 5.91 4.50 86.38 0.39 6.29 16 13 N -0.70 -22.62 4.91 -465.83 -2.29 -24.90 16 14 C 0.54 18.19 7.77 86.83 0.67 18.86 16 15 O -0.58 -24.13 16.30 -3.82 -0.06 -24.19 16 16 C -0.08 -2.18 5.87 -20.09 -0.12 -2.30 16 17 C -0.10 -1.79 9.45 22.30 0.21 -1.58 16 18 C -0.05 -0.71 9.58 22.21 0.21 -0.49 16 19 C -0.17 -3.18 5.76 -21.16 -0.12 -3.30 16 20 C 0.42 6.81 7.89 85.45 0.67 7.48 16 21 O -0.47 -4.56 12.91 -85.64 -1.11 -5.67 16 22 N -0.56 -10.19 10.42 -311.99 -3.25 -13.44 16 23 C 0.32 5.74 12.22 180.89 2.21 7.95 16 24 N -0.53 -12.34 10.44 -193.94 -2.03 -14.37 16 25 C 0.15 3.55 6.61 40.09 0.26 3.82 16 26 C -0.06 -1.50 9.58 22.80 0.22 -1.28 16 27 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 3.03 6.07 -2.38 -0.01 3.02 16 32 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 33 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 10.98 4.15 -92.71 -0.38 10.60 16 37 H 0.16 2.19 6.34 -2.91 -0.02 2.18 16 38 H 0.18 1.23 7.70 -2.91 -0.02 1.21 16 39 H 0.44 -0.56 9.06 -74.06 -0.67 -1.23 16 40 H 0.23 2.25 8.06 -2.92 -0.02 2.23 16 41 H 0.14 4.11 7.61 -2.91 -0.02 4.09 16 Total: -1.00 -68.56 341.65 -0.06 -68.62 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.05 Total: 12.66 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.39 Total: 3.59 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -7.36 Total: -98.87 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.17 Total: -29.86 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -68.56 -0.06 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603062832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.480 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds