Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47231 * 2 1 4 4 N 1.46505 * 109.46830 * 120.00110 * 2 1 3 5 5 C 1.46493 * 120.00076 * 304.77755 * 4 2 1 6 6 C 1.50709 * 109.47205 * 262.67446 * 5 4 2 7 7 H 1.07991 * 119.99724 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99993 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00249 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00234 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46794 * 59.99660 * 10 8 6 12 12 H 1.48501 * 109.47543 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46995 * 300.00154 * 10 8 6 14 14 C 1.34779 * 119.99981 * 124.78148 * 4 2 1 15 15 O 1.21602 * 119.99571 * 3.25105 * 14 4 2 16 16 C 1.47487 * 120.00064 * 183.24905 * 14 4 2 17 17 N 1.33522 * 119.92818 * 354.19256 * 16 14 4 18 18 N 1.28386 * 123.16601 * 180.27574 * 17 16 14 19 19 C 1.34036 * 121.92437 * 359.74692 * 18 17 16 20 20 C 1.40255 * 121.55723 * 179.97438 * 19 18 17 21 21 C 1.36302 * 119.68573 * 180.02562 * 20 19 18 22 22 C 1.39208 * 121.10263 * 359.95528 * 21 20 19 23 23 C 1.36390 * 120.81986 * 0.02562 * 22 21 20 24 24 C 1.39992 * 119.49068 * 359.97438 * 23 22 21 25 25 C 1.39871 * 119.93040 * 173.95284 * 16 14 4 26 26 O 1.35265 * 121.37822 * 0.02562 * 25 16 14 27 27 H 1.09002 * 109.47560 * 299.99624 * 1 2 3 28 28 H 1.09000 * 109.47302 * 59.99823 * 1 2 3 29 29 H 1.09005 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47012 * 239.99845 * 2 1 3 31 31 H 1.08997 * 109.47596 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47122 * 300.00287 * 3 2 1 33 33 H 1.09001 * 109.47249 * 59.99990 * 3 2 1 34 34 H 1.09004 * 109.47631 * 22.67175 * 5 4 2 35 35 H 1.09002 * 109.47701 * 142.67493 * 5 4 2 36 36 H 0.96994 * 120.00393 * 180.02562 * 9 8 6 37 37 H 1.08005 * 120.15450 * 0.05108 * 20 19 18 38 38 H 1.08005 * 119.44333 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.59084 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.25468 * 179.97438 * 23 22 21 41 41 H 0.96705 * 114.00112 * 269.71097 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5801 -0.2541 2.5242 6 6 2.6222 0.6548 3.1234 7 1 3.5211 0.8840 2.5705 8 6 2.4285 1.1929 4.3779 9 7 1.3340 0.9134 5.0515 10 14 3.7204 2.3190 5.1210 11 1 3.9054 3.5049 4.2465 12 1 3.2763 2.7616 6.4672 13 1 5.0066 1.5861 5.2397 14 6 2.8706 -1.7276 1.0749 15 8 3.2806 -2.0524 -0.0229 16 6 3.3061 -2.4684 2.2736 17 7 2.9490 -2.0410 3.4871 18 7 3.2970 -2.6341 4.5713 19 6 4.0500 -3.7429 4.5622 20 6 4.4262 -4.3844 5.7514 21 6 5.1933 -5.5098 5.6978 22 6 5.6117 -6.0376 4.4794 23 6 5.2646 -5.4406 3.3032 24 6 4.4773 -4.2832 3.3238 25 6 4.0881 -3.6200 2.1365 26 8 4.4605 -4.0777 0.9194 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.6360 0.2836 2.4369 35 1 1.4445 -1.1244 3.1664 36 1 1.1975 1.2923 5.9339 37 1 4.1092 -3.9888 6.7050 38 1 5.4811 -6.0004 6.6159 39 1 6.2187 -6.9308 4.4654 40 1 5.5945 -5.8576 2.3632 41 1 3.8387 -4.7068 0.5285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735653265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = 4.380672 kcal Electronic energy + Delta-G solvation = -26995.397784 eV Core-core repulsion = 23262.439159 eV Total energy + Delta-G solvation = -3732.958625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52532 -40.73523 -39.00548 -38.64185 -37.32363 -34.82180 -33.79232 -33.03408 -32.09726 -31.12190 -29.03690 -28.04904 -26.13878 -26.07913 -24.83190 -23.34926 -22.91106 -20.50940 -20.08589 -19.67051 -18.85825 -18.47916 -17.38875 -17.35375 -16.92583 -16.42507 -16.19621 -15.74278 -15.61120 -15.32231 -15.07378 -14.92601 -14.69753 -14.25529 -14.02933 -13.94715 -13.28090 -13.24373 -13.10053 -12.97696 -12.87589 -12.80758 -12.71855 -12.29462 -12.26984 -12.16667 -11.70754 -11.61098 -11.45073 -11.41495 -10.78127 -10.58102 -10.35341 -10.10581 -9.50020 -9.21102 -8.02650 -6.05845 -1.11593 -0.57116 0.63197 1.36094 1.38988 1.41267 1.45948 2.08851 2.21330 2.47578 2.56612 2.89478 3.00219 3.31520 3.33355 3.48938 3.74989 3.80964 4.02837 4.13006 4.21556 4.25890 4.39829 4.43083 4.49158 4.69985 4.73469 4.81709 4.94101 4.95277 4.98771 5.10404 5.19747 5.28721 5.32515 5.34949 5.47370 5.58539 5.76877 5.88832 5.95347 6.29673 6.43099 6.52663 6.95528 7.19493 7.56022 7.71227 9.04820 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.006193 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.135160 B = 4519.820822 C = 6286.253452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 C -0.145 4.145 4 N -0.575 5.575 5 C 0.244 3.756 6 C -0.499 4.499 7 H 0.029 0.971 8 C 0.037 3.963 9 N -0.906 5.906 10 Si 0.931 3.069 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.290 1.290 14 C 0.566 3.434 15 O -0.570 6.570 16 C -0.077 4.077 17 N -0.132 5.132 18 N -0.257 5.257 19 C 0.063 3.937 20 C -0.108 4.108 21 C -0.067 4.067 22 C -0.090 4.090 23 C -0.091 4.091 24 C -0.123 4.123 25 C 0.199 3.801 26 O -0.460 6.460 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.148 0.852 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -15.524 -2.570 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.202 4.202 4 N -0.304 5.304 5 C 0.124 3.876 6 C -0.538 4.538 7 H 0.048 0.952 8 C -0.163 4.163 9 N -0.545 5.545 10 Si 0.758 3.242 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.217 1.217 14 C 0.352 3.648 15 O -0.452 6.452 16 C -0.211 4.211 17 N 0.010 4.990 18 N -0.114 5.114 19 C -0.064 4.064 20 C -0.129 4.129 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.132 4.132 25 C 0.140 3.860 26 O -0.273 6.273 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.165 0.835 38 H 0.196 0.804 39 H 0.198 0.802 40 H 0.179 0.821 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.689 -14.200 -2.157 15.109 hybrid contribution 0.878 0.017 -0.226 0.907 sum 5.567 -14.184 -2.383 15.422 Atomic orbital electron populations 1.22054 0.93197 1.02138 1.03223 1.21217 0.95459 0.93488 0.87573 1.21991 0.99995 0.95574 1.02689 1.48371 1.42907 1.29223 1.09874 1.19673 0.94201 0.96290 0.77460 1.21163 1.04175 1.27266 1.01240 0.95237 1.25238 0.96604 0.97581 0.96900 1.69967 1.26690 1.44960 1.12912 0.86058 0.80048 0.79801 0.78271 1.19751 1.20271 1.21691 1.17577 0.79531 0.80973 0.86720 1.90674 1.58193 1.69835 1.26497 1.23378 1.03071 0.98900 0.95761 1.74399 1.11586 1.18984 0.94037 1.74069 1.10826 1.06049 1.20467 1.21059 0.96279 0.93818 0.95221 1.21078 0.99250 0.96546 0.96062 1.21594 0.93160 0.93273 1.00647 1.21605 0.98035 1.00552 0.90758 1.21199 0.95729 0.92263 1.01795 1.19368 1.02640 0.99523 0.91642 1.19481 0.88801 0.90843 0.86896 1.84543 1.49631 1.65262 1.27833 0.92948 0.88694 0.92832 0.89323 0.94861 0.89265 0.92880 0.96085 0.91946 0.92972 0.83458 0.80367 0.80232 0.82096 0.71709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.10 71.98 0.65 -4.11 16 2 C 0.13 4.79 3.24 44.99 0.15 4.94 16 3 C -0.14 -5.36 8.94 71.98 0.64 -4.71 16 4 N -0.57 -26.47 2.38 -805.92 -1.92 -28.38 16 5 C 0.24 12.71 4.10 85.64 0.35 13.06 16 6 C -0.50 -28.14 7.11 25.60 0.18 -27.95 16 7 H 0.03 1.75 7.81 -2.92 -0.02 1.72 16 8 C 0.04 2.12 5.46 84.65 0.46 2.58 16 9 N -0.91 -53.07 13.29 21.45 0.28 -52.78 16 10 Si 0.93 46.04 29.54 68.60 2.03 48.07 16 11 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 14 C 0.57 26.33 7.57 86.68 0.66 26.99 16 15 O -0.57 -26.43 14.58 16.54 0.24 -26.19 16 16 C -0.08 -3.47 6.71 41.72 0.28 -3.19 16 17 N -0.13 -6.53 6.13 -48.51 -0.30 -6.83 16 18 N -0.26 -11.76 11.54 -52.03 -0.60 -12.36 16 19 C 0.06 2.24 6.68 40.15 0.27 2.51 16 20 C -0.11 -2.78 9.99 22.31 0.22 -2.55 16 21 C -0.07 -1.05 9.94 22.05 0.22 -0.83 16 22 C -0.09 -1.26 9.96 22.07 0.22 -1.04 16 23 C -0.09 -1.86 9.62 22.26 0.21 -1.64 16 24 C -0.12 -3.86 5.75 -21.20 -0.12 -3.98 16 25 C 0.20 7.20 6.80 23.46 0.16 7.36 16 26 O -0.46 -13.94 11.09 -64.92 -0.72 -14.66 16 27 H 0.05 1.86 6.50 -2.39 -0.02 1.85 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.09 3.35 6.93 -2.39 -0.02 3.33 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.05 2.20 7.33 -2.39 -0.02 2.19 16 34 H 0.02 1.14 6.20 -2.39 -0.01 1.12 16 35 H 0.06 3.53 5.20 -5.25 -0.03 3.50 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.16 2.45 7.74 -2.91 -0.02 2.43 16 41 H 0.42 8.46 9.06 -74.05 -0.67 7.78 16 Total: -1.00 -77.24 342.65 3.97 -73.27 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.39 Total: 12.45 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.56 Total: 7.42 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -2.53 Total: -100.35 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.48 Total: -40.85 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.24 3.97 -73.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735653265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.646 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds