Wall clock time and date at job start Tue Mar 31 2020 10:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47401 * 2 1 4 4 C 1.50702 * 109.47342 * 120.00477 * 2 1 3 5 5 N 1.28012 * 119.99757 * 240.00213 * 4 2 1 6 6 N 1.40105 * 119.99605 * 179.97438 * 5 4 2 7 7 C 1.39023 * 119.99920 * 179.72104 * 6 5 4 8 8 N 1.32473 * 119.70488 * 0.02562 * 7 6 5 9 9 C 1.31908 * 121.62082 * 179.75003 * 8 7 6 10 10 C 1.38104 * 120.85531 * 0.53251 * 9 8 7 11 11 C 1.38838 * 119.33331 * 359.73489 * 10 9 8 12 12 C 1.38342 * 118.50731 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.45399 * 180.02562 * 12 11 10 14 14 F 1.39901 * 109.46789 * 359.97144 * 13 12 11 15 15 F 1.39895 * 109.47154 * 119.97373 * 13 12 11 16 16 F 1.39902 * 109.47040 * 239.97428 * 13 12 11 17 17 C 1.52999 * 109.47052 * 240.00181 * 2 1 3 18 18 C 1.50697 * 109.47299 * 59.99862 * 17 2 1 19 19 H 1.08004 * 119.99669 * 0.02562 * 18 17 2 20 20 C 1.37874 * 120.00477 * 179.97438 * 18 17 2 21 21 N 1.31517 * 120.00080 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47165 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47099 * 120.00253 * 22 20 18 25 25 H 1.48504 * 109.47029 * 240.00073 * 22 20 18 26 26 H 1.08998 * 109.46763 * 299.99526 * 1 2 3 27 27 H 1.08994 * 109.47083 * 59.99597 * 1 2 3 28 28 H 1.09006 * 109.46999 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47246 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47331 * 300.00251 * 3 2 1 31 31 H 1.09009 * 109.47130 * 60.00120 * 3 2 1 32 32 H 1.08001 * 119.99767 * 59.99410 * 4 2 1 33 33 H 0.97001 * 120.00437 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.57685 * 180.28848 * 9 8 7 35 35 H 1.08002 * 120.33050 * 179.76654 * 10 9 8 36 36 H 1.07996 * 120.74628 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47339 * 180.02562 * 17 2 1 38 38 H 1.09006 * 109.47230 * 299.99873 * 17 2 1 39 39 H 0.96994 * 120.00378 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.7683 -0.0884 2.0731 6 7 3.2349 -0.7488 3.2172 7 6 4.0390 -0.0749 4.1294 8 7 4.3599 1.1917 3.9113 9 6 5.1161 1.8685 4.7540 10 6 5.6123 1.2721 5.8965 11 6 5.3037 -0.0558 6.1595 12 6 4.5044 -0.7385 5.2601 13 6 4.1417 -2.1810 5.5026 14 9 4.7273 -2.6147 6.6968 15 9 2.7511 -2.3031 5.5938 16 9 4.6101 -2.9642 4.4422 17 6 2.0400 -0.7212 -1.2493 18 6 1.5376 -0.0108 -2.4797 19 1 0.9170 0.8675 -2.3805 20 6 1.8711 -0.4815 -3.7320 21 7 2.6272 -1.5508 -3.8528 22 14 1.2490 0.3996 -5.2572 23 1 0.4244 1.5666 -4.8530 24 1 2.4043 0.8664 -6.0650 25 1 0.4242 -0.5336 -6.0661 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.7714 -1.7445 1.4012 33 1 3.0007 -1.6775 3.3707 34 1 5.3535 2.9013 4.5459 35 1 6.2338 1.8331 6.5787 36 1 5.6798 -0.5449 7.0459 37 1 3.1300 -0.7216 -1.2491 38 1 1.6767 -1.7489 -1.2493 39 1 2.8621 -1.8817 -4.7337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755643459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:22 Heat of formation + Delta-G solvation = -97.008369 kcal Electronic energy + Delta-G solvation = -26081.139827 eV Core-core repulsion = 21801.927903 eV Total energy + Delta-G solvation = -4279.211924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.37583 -48.86063 -48.84127 -41.41795 -39.34278 -37.26793 -34.68676 -34.15779 -33.42975 -30.38974 -28.94443 -27.92109 -27.33201 -25.92164 -24.57206 -23.64764 -22.81937 -20.31803 -19.68635 -19.51240 -19.34160 -18.77239 -18.33579 -18.00020 -16.79671 -16.54802 -16.04843 -15.99949 -15.56138 -15.53954 -15.33991 -15.26302 -15.01486 -14.97187 -14.91046 -14.70372 -14.53675 -13.98406 -13.83836 -13.66412 -13.00290 -12.89551 -12.73654 -12.67239 -12.56906 -12.30443 -12.03692 -11.74651 -11.39928 -11.20267 -11.18517 -10.90550 -10.77471 -10.51254 -10.49194 -9.00750 -8.11959 -6.19099 -0.25185 0.20602 1.24688 1.35317 1.44617 1.46573 1.47973 1.58180 2.47397 2.54445 2.61330 2.79597 3.21265 3.23244 3.24901 3.64530 3.81493 3.94372 4.06786 4.22116 4.36034 4.40780 4.46211 4.66206 4.84924 4.97333 5.03053 5.07853 5.16291 5.21954 5.41442 5.43801 5.51081 5.54238 5.56998 5.77774 5.82507 5.91186 6.31787 6.74716 6.94896 7.22702 7.48455 9.00694 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002982 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.985458 B = 9388.621711 C = 9911.439089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.007 4.007 3 C -0.104 4.104 4 C 0.091 3.909 5 N -0.245 5.245 6 N -0.581 5.581 7 C 0.444 3.556 8 N -0.542 5.542 9 C 0.166 3.834 10 C -0.212 4.212 11 C 0.013 3.987 12 C -0.318 4.318 13 C 0.518 3.482 14 F -0.165 7.165 15 F -0.183 7.183 16 F -0.186 7.186 17 C 0.048 3.952 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.002 4.002 21 N -0.938 5.938 22 Si 0.957 3.043 23 H -0.257 1.257 24 H -0.286 1.286 25 H -0.282 1.282 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.392 0.608 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.178 0.822 37 H -0.018 1.018 38 H -0.001 1.001 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 3.544 23.989 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.009 4.009 3 C -0.162 4.162 4 C -0.124 4.124 5 N -0.047 5.047 6 N -0.304 5.304 7 C 0.209 3.791 8 N -0.257 5.257 9 C 0.007 3.993 10 C -0.234 4.234 11 C -0.013 4.013 12 C -0.327 4.327 13 C 0.463 3.537 14 F -0.147 7.147 15 F -0.164 7.164 16 F -0.167 7.167 17 C 0.009 3.991 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.199 4.199 21 N -0.579 5.579 22 Si 0.783 3.217 23 H -0.181 1.181 24 H -0.213 1.213 25 H -0.208 1.208 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.233 0.767 34 H 0.212 0.788 35 H 0.205 0.795 36 H 0.196 0.804 37 H 0.000 1.000 38 H 0.018 0.982 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.412 4.688 23.334 24.206 hybrid contribution -0.222 -2.145 -0.502 2.214 sum 4.190 2.543 22.832 23.352 Atomic orbital electron populations 1.21647 0.91981 1.02030 1.01851 1.19577 0.96703 0.95471 0.89171 1.21452 0.99592 0.94524 1.00622 1.26462 0.93326 0.98304 0.94315 1.74402 1.10891 1.24551 0.94825 1.45838 1.51888 1.12484 1.20161 1.17761 0.86983 0.89371 0.84987 1.67531 1.18658 1.05972 1.33582 1.23542 0.87036 1.00589 0.88098 1.22384 1.05359 0.95086 1.00564 1.21628 0.88936 0.94451 0.96241 1.20307 1.15720 0.94202 1.02504 1.18080 0.74342 0.87122 0.74142 1.93168 1.83911 1.91079 1.46493 1.93211 1.30620 1.96737 1.95838 1.93224 1.88480 1.77530 1.57478 1.18956 0.94083 0.94658 0.91373 1.21603 1.30432 1.12107 0.90893 0.90832 1.25893 0.95604 0.95832 1.02552 1.70115 1.38776 1.24993 1.24034 0.85506 0.78028 0.78910 0.79277 1.18068 1.21266 1.20839 0.92182 0.91558 0.92612 0.94960 0.92536 0.92746 0.86874 0.76709 0.78836 0.79532 0.80430 0.99980 0.98226 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.20 71.98 0.59 -3.46 16 2 C -0.01 -0.26 0.75 -52.93 -0.04 -0.30 16 3 C -0.10 -4.12 7.45 71.98 0.54 -3.59 16 4 C 0.09 3.34 9.56 88.67 0.85 4.18 16 5 N -0.25 -9.07 9.74 -50.46 -0.49 -9.56 16 6 N -0.58 -18.87 6.18 -55.39 -0.34 -19.22 16 7 C 0.44 13.02 7.51 133.03 1.00 14.02 16 8 N -0.54 -15.72 9.91 -193.19 -1.91 -17.63 16 9 C 0.17 3.04 11.18 84.65 0.95 3.99 16 10 C -0.21 -2.62 10.11 22.38 0.23 -2.40 16 11 C 0.01 0.20 9.53 22.44 0.21 0.41 16 12 C -0.32 -7.21 5.40 -19.63 -0.11 -7.32 16 13 C 0.52 11.59 2.80 71.24 0.20 11.79 16 14 F -0.17 -3.12 16.05 44.97 0.72 -2.40 16 15 F -0.18 -4.34 16.27 44.97 0.73 -3.61 16 16 F -0.19 -4.71 16.26 44.97 0.73 -3.98 16 17 C 0.05 2.41 4.02 29.85 0.12 2.53 16 18 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 19 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 20 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 21 N -0.94 -56.46 13.29 21.45 0.28 -56.17 16 22 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.41 6.62 -2.39 -0.02 2.40 16 28 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.03 1.36 8.06 -2.38 -0.02 1.34 16 30 H 0.06 2.26 6.62 -2.39 -0.02 2.25 16 31 H 0.05 1.95 8.06 -2.38 -0.02 1.93 16 32 H 0.11 3.71 8.00 -2.91 -0.02 3.69 16 33 H 0.39 11.58 6.05 -213.32 -1.29 10.29 16 34 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.18 1.55 7.25 -2.91 -0.02 1.53 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.77 341.50 6.74 -62.02 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.20 Total: 12.02 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.19 Total: -6.99 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -2.46 Total: -102.58 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 2.18 Total: -9.99 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.77 6.74 -62.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755643459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.986 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds