Wall clock time and date at job start Tue Mar 31 2020 11:58:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47724 * 2 1
4 4 H 1.08997 * 109.46927 * 305.00335 * 3 2 1
5 5 C 1.50698 * 109.47608 * 184.99950 * 3 2 1
6 6 H 1.07998 * 120.00212 * 240.00008 * 5 3 2
7 7 C 1.37875 * 119.99952 * 59.99628 * 5 3 2
8 8 N 1.31518 * 120.00124 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99990 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.46907 * 90.00525 * 9 7 5
11 11 H 1.48496 * 109.47210 * 210.00222 * 9 7 5
12 12 H 1.48495 * 109.47295 * 330.00251 * 9 7 5
13 13 O 1.45200 * 109.47072 * 64.99454 * 3 2 1
14 14 C 1.34773 * 117.00435 * 270.00781 * 13 3 2
15 15 O 1.21543 * 119.99671 * 359.97438 * 14 13 3
16 16 C 1.47137 * 120.00188 * 180.02562 * 14 13 3
17 17 C 1.38049 * 126.82196 * 0.02562 * 16 14 13
18 18 N 1.34118 * 107.88155 * 179.97438 * 17 16 14
19 19 C 1.46499 * 125.15410 * 180.02562 * 18 17 16
20 20 N 1.39765 * 109.69274 * 0.26072 * 18 17 16
21 21 C 1.31357 * 109.10269 * 359.54897 * 20 18 17
22 22 C 1.48287 * 126.52020 * 180.15921 * 21 20 18
23 23 C 1.39805 * 120.53883 * 325.32767 * 22 21 20
24 24 C 1.38405 * 118.30755 * 179.97438 * 23 22 21
25 25 C 1.38319 * 119.28614 * 359.97438 * 24 23 22
26 26 N 1.31888 * 121.04210 * 0.02562 * 25 24 23
27 27 C 1.31740 * 121.85448 * 359.72683 * 26 25 24
28 28 H 1.09006 * 109.46749 * 300.00303 * 1 2 3
29 29 H 1.09006 * 109.47079 * 59.99937 * 1 2 3
30 30 H 1.08999 * 109.47724 * 180.02562 * 1 2 3
31 31 H 1.08996 * 109.47467 * 239.99609 * 2 1 3
32 32 H 1.09006 * 109.47079 * 120.00063 * 2 1 3
33 33 H 0.96999 * 120.00418 * 179.97438 * 8 7 5
34 34 H 1.07998 * 126.05820 * 359.94065 * 17 16 14
35 35 H 1.09002 * 109.47391 * 89.99669 * 19 18 17
36 36 H 1.09001 * 109.46813 * 329.99725 * 19 18 17
37 37 H 1.09004 * 109.47041 * 209.99852 * 19 18 17
38 38 H 1.08002 * 120.85075 * 359.95263 * 23 22 21
39 39 H 1.07995 * 120.35742 * 180.02562 * 24 23 22
40 40 H 1.08008 * 119.48061 * 179.97438 * 25 24 23
41 41 H 1.07998 * 119.70817 * 180.29031 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 3.5420 1.4442 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8782 -1.2279
8 7 3.4062 0.3372 -2.1733
9 14 6.0051 0.8798 -1.3810
10 1 6.5538 -0.3523 -0.7597
11 1 6.3837 0.9212 -2.8163
12 1 6.5577 2.0716 -0.6888
13 8 1.6559 2.0917 1.2406
14 6 0.4680 2.7280 1.2560
15 8 -0.2277 2.7403 0.2594
16 6 0.0137 3.4087 2.4788
17 6 0.6863 3.4846 3.6820
18 7 -0.0707 4.1929 4.5329
19 6 0.2848 4.5039 5.9197
20 7 -1.2524 4.5848 3.8978
21 6 -1.2431 4.1419 2.6612
22 6 -2.3047 4.3399 1.6450
23 6 -3.6510 4.3696 2.0205
24 6 -4.6035 4.5577 1.0342
25 6 -4.1968 4.7095 -0.2791
26 7 -2.9188 4.6770 -0.6034
27 6 -1.9762 4.5053 0.3009
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 3.8292 -0.0606 -2.9502
34 1 1.6508 3.0501 3.8996
35 1 0.8320 5.4460 5.9520
36 1 0.9098 3.7067 6.3220
37 1 -0.6230 4.5903 6.5168
38 1 -3.9405 4.2484 3.0539
39 1 -5.6530 4.5866 1.2873
40 1 -4.9375 4.8561 -1.0514
41 1 -0.9399 4.4890 -0.0027
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787087025.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:45
Heat of formation + Delta-G solvation = 26.682274 kcal
Electronic energy + Delta-G solvation = -26123.345878 eV
Core-core repulsion = 22391.354323 eV
Total energy + Delta-G solvation = -3731.991555 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.22346 -39.69707 -39.13728 -35.70262 -34.01746 -33.46220 -32.16008 -31.39112
-30.99954 -30.37506 -27.37691 -26.81675 -24.16321 -23.43839 -23.19773 -22.36697
-20.61763 -19.93001 -19.34569 -17.69779 -16.89198 -16.47150 -16.34488 -16.08210
-15.68498 -15.54030 -14.97547 -14.89084 -14.39524 -13.92771 -13.70911 -13.29216
-13.09191 -12.97772 -12.88128 -12.79017 -12.55630 -12.05563 -11.76358 -11.39411
-11.31139 -11.14858 -10.97197 -10.94127 -10.59503 -10.25205 -10.20781 -9.76755
-9.65488 -9.49289 -9.31896 -9.24418 -8.85558 -8.74898 -8.41644 -8.33972
-6.15690 -4.22842 0.88757 1.42735 1.54665 2.18514 2.32292 3.25362
3.31228 3.34451 3.71477 3.73413 4.00934 4.17892 4.37591 4.47969
4.70532 4.82091 4.88432 4.91578 5.05097 5.13549 5.13680 5.16293
5.32042 5.50345 5.60475 5.90091 5.98534 6.09294 6.29196 6.32096
6.33557 6.37915 6.53983 6.71761 6.85172 6.94233 7.04248 7.23388
7.32020 7.44364 7.64824 7.78464 8.00304 8.17687 8.19910 8.69811
8.94567 9.42311 10.90946
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013363 B = 0.004220 C = 0.003476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2094.798139 B = 6633.871663 C = 8053.372766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.135 4.135
3 C 0.224 3.776
4 H 0.050 0.950
5 C -0.521 4.521
6 H 0.067 0.933
7 C 0.064 3.936
8 N -0.886 5.886
9 Si 0.909 3.091
10 H -0.279 1.279
11 H -0.284 1.284
12 H -0.272 1.272
13 O -0.354 6.354
14 C 0.530 3.470
15 O -0.513 6.513
16 C -0.261 4.261
17 C 0.129 3.871
18 N -0.369 5.369
19 C 0.098 3.902
20 N -0.289 5.289
21 C 0.172 3.828
22 C -0.080 4.080
23 C -0.046 4.046
24 C -0.191 4.191
25 C 0.106 3.894
26 N -0.486 5.486
27 C 0.169 3.831
28 H 0.032 0.968
29 H 0.054 0.946
30 H 0.030 0.970
31 H 0.108 0.892
32 H 0.039 0.961
33 H 0.266 0.734
34 H 0.197 0.803
35 H 0.079 0.921
36 H 0.093 0.907
37 H 0.091 0.909
38 H 0.133 0.867
39 H 0.134 0.866
40 H 0.154 0.846
41 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.217 7.408 13.844 18.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.173 4.173
3 C 0.172 3.828
4 H 0.067 0.933
5 C -0.559 4.559
6 H 0.086 0.914
7 C -0.139 4.139
8 N -0.524 5.524
9 Si 0.736 3.264
10 H -0.204 1.204
11 H -0.210 1.210
12 H -0.197 1.197
13 O -0.270 6.270
14 C 0.375 3.625
15 O -0.405 6.405
16 C -0.273 4.273
17 C -0.019 4.019
18 N -0.148 5.148
19 C -0.043 4.043
20 N -0.108 5.108
21 C 0.004 3.996
22 C -0.084 4.084
23 C -0.074 4.074
24 C -0.211 4.211
25 C -0.051 4.051
26 N -0.194 5.194
27 C 0.011 3.989
28 H 0.051 0.949
29 H 0.073 0.927
30 H 0.049 0.951
31 H 0.126 0.874
32 H 0.058 0.942
33 H 0.076 0.924
34 H 0.213 0.787
35 H 0.098 0.902
36 H 0.111 0.889
37 H 0.110 0.890
38 H 0.151 0.849
39 H 0.152 0.848
40 H 0.171 0.829
41 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -10.693 8.069 13.545 19.051
hybrid contribution 1.146 -0.810 0.306 1.436
sum -9.547 7.260 13.851 18.322
Atomic orbital electron populations
1.21849 0.98288 0.98842 1.00924 1.22011 0.92680 0.99397 1.03178
1.20666 0.94828 0.88694 0.78632 0.93253 1.21023 0.89702 1.38977
1.06215 0.91438 1.24867 0.99060 0.94838 0.95094 1.69892 1.35301
1.37753 1.09427 0.86315 0.84114 0.78568 0.77370 1.20447 1.20987
1.19690 1.86513 1.33580 1.62667 1.44261 1.19713 0.80689 0.76171
0.85935 1.90753 1.55352 1.59205 1.35150 1.20656 0.97825 1.13875
0.94988 1.23221 0.97162 0.92481 0.89084 1.48110 1.13913 1.41085
1.11703 1.21992 1.02606 1.02752 0.76953 1.77283 1.03057 1.23547
1.06958 1.21535 0.92571 0.94525 0.90964 1.18705 0.91099 1.05643
0.92964 1.21566 0.91511 0.94254 1.00022 1.21970 1.00390 1.04466
0.94247 1.22923 0.93298 0.93807 0.95046 1.67871 1.01156 1.13127
1.37246 1.23534 1.00377 0.88047 0.86912 0.94885 0.92692 0.95079
0.87421 0.94178 0.92402 0.78660 0.90245 0.88863 0.89045 0.84884
0.84813 0.82896 0.80602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.17 8.56 37.16 0.32 -2.85 16
2 C -0.13 -3.33 5.49 -26.73 -0.15 -3.48 16
3 C 0.22 5.84 2.25 -27.88 -0.06 5.78 16
4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16
5 C -0.52 -14.27 8.90 -34.44 -0.31 -14.58 16
6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16
7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16
8 N -0.89 -24.84 11.29 55.43 0.63 -24.22 16
9 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16
10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
13 O -0.35 -8.15 9.65 -40.69 -0.39 -8.55 16
14 C 0.53 11.12 6.28 34.34 0.22 11.33 16
15 O -0.51 -11.61 9.66 -19.30 -0.19 -11.80 16
16 C -0.26 -4.50 6.27 -102.96 -0.65 -5.14 16
17 C 0.13 1.73 11.28 -16.62 -0.19 1.54 16
18 N -0.37 -4.40 3.95 -67.63 -0.27 -4.67 16
19 C 0.10 0.63 11.39 59.85 0.68 1.31 16
20 N -0.29 -4.21 12.48 34.58 0.43 -3.78 16
21 C 0.17 2.82 6.96 -80.55 -0.56 2.26 16
22 C -0.08 -1.29 5.74 -104.77 -0.60 -1.89 16
23 C -0.05 -0.62 9.92 -38.93 -0.39 -1.00 16
24 C -0.19 -2.21 10.10 -39.49 -0.40 -2.60 16
25 C 0.11 1.39 11.17 -17.50 -0.20 1.20 16
26 N -0.49 -8.23 10.35 -12.96 -0.13 -8.36 16
27 C 0.17 3.00 8.97 -17.18 -0.15 2.85 16
28 H 0.03 0.72 6.06 -51.93 -0.31 0.40 16
29 H 0.05 1.29 7.79 -51.93 -0.40 0.89 16
30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16
32 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16
33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16
34 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16
35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
36 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16
37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16
38 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16
39 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16
40 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16
41 H 0.18 3.44 5.69 -52.49 -0.30 3.14 16
LS Contribution 348.51 15.07 5.25 5.25
Total: -1.00 -32.95 348.51 -7.26 -40.22
By element:
Atomic # 1 Polarization: 8.85 SS G_CDS: -5.05 Total: 3.80 kcal
Atomic # 6 Polarization: -1.12 SS G_CDS: -2.52 Total: -3.65 kcal
Atomic # 7 Polarization: -41.68 SS G_CDS: 0.66 Total: -41.03 kcal
Atomic # 8 Polarization: -19.77 SS G_CDS: -0.58 Total: -20.35 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -32.95 -7.26 -40.22 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787087025.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.899 kcal
(2) G-P(sol) polarization free energy of solvation -32.953 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds