Wall clock time and date at job start Tue Mar 31 2020 11:58:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47724 * 2 1
4 4 H 1.08997 * 109.46927 * 305.00335 * 3 2 1
5 5 C 1.50698 * 109.47608 * 184.99950 * 3 2 1
6 6 H 1.07998 * 120.00212 * 240.00008 * 5 3 2
7 7 C 1.37875 * 119.99952 * 59.99628 * 5 3 2
8 8 N 1.31518 * 120.00124 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99990 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.46907 * 90.00525 * 9 7 5
11 11 H 1.48496 * 109.47210 * 210.00222 * 9 7 5
12 12 H 1.48495 * 109.47295 * 330.00251 * 9 7 5
13 13 O 1.45200 * 109.47072 * 64.99454 * 3 2 1
14 14 C 1.34773 * 117.00435 * 270.00781 * 13 3 2
15 15 O 1.21543 * 119.99671 * 359.97438 * 14 13 3
16 16 C 1.47137 * 120.00188 * 180.02562 * 14 13 3
17 17 C 1.38049 * 126.82196 * 0.02562 * 16 14 13
18 18 N 1.34118 * 107.88155 * 179.97438 * 17 16 14
19 19 C 1.46499 * 125.15410 * 180.02562 * 18 17 16
20 20 N 1.39765 * 109.69274 * 0.26072 * 18 17 16
21 21 C 1.31357 * 109.10269 * 359.54897 * 20 18 17
22 22 C 1.48287 * 126.52020 * 180.15921 * 21 20 18
23 23 C 1.39805 * 120.53883 * 325.32767 * 22 21 20
24 24 C 1.38405 * 118.30755 * 179.97438 * 23 22 21
25 25 C 1.38319 * 119.28614 * 359.97438 * 24 23 22
26 26 N 1.31888 * 121.04210 * 0.02562 * 25 24 23
27 27 C 1.31740 * 121.85448 * 359.72683 * 26 25 24
28 28 H 1.09006 * 109.46749 * 300.00303 * 1 2 3
29 29 H 1.09006 * 109.47079 * 59.99937 * 1 2 3
30 30 H 1.08999 * 109.47724 * 180.02562 * 1 2 3
31 31 H 1.08996 * 109.47467 * 239.99609 * 2 1 3
32 32 H 1.09006 * 109.47079 * 120.00063 * 2 1 3
33 33 H 0.96999 * 120.00418 * 179.97438 * 8 7 5
34 34 H 1.07998 * 126.05820 * 359.94065 * 17 16 14
35 35 H 1.09002 * 109.47391 * 89.99669 * 19 18 17
36 36 H 1.09001 * 109.46813 * 329.99725 * 19 18 17
37 37 H 1.09004 * 109.47041 * 209.99852 * 19 18 17
38 38 H 1.08002 * 120.85075 * 359.95263 * 23 22 21
39 39 H 1.07995 * 120.35742 * 180.02562 * 24 23 22
40 40 H 1.08008 * 119.48061 * 179.97438 * 25 24 23
41 41 H 1.07998 * 119.70817 * 180.29031 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 3.5420 1.4442 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8782 -1.2279
8 7 3.4062 0.3372 -2.1733
9 14 6.0051 0.8798 -1.3810
10 1 6.5538 -0.3523 -0.7597
11 1 6.3837 0.9212 -2.8163
12 1 6.5577 2.0716 -0.6888
13 8 1.6559 2.0917 1.2406
14 6 0.4680 2.7280 1.2560
15 8 -0.2277 2.7403 0.2594
16 6 0.0137 3.4087 2.4788
17 6 0.6863 3.4846 3.6820
18 7 -0.0707 4.1929 4.5329
19 6 0.2848 4.5039 5.9197
20 7 -1.2524 4.5848 3.8978
21 6 -1.2431 4.1419 2.6612
22 6 -2.3047 4.3399 1.6450
23 6 -3.6510 4.3696 2.0205
24 6 -4.6035 4.5577 1.0342
25 6 -4.1968 4.7095 -0.2791
26 7 -2.9188 4.6770 -0.6034
27 6 -1.9762 4.5053 0.3009
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5139 0.8900
33 1 3.8292 -0.0606 -2.9502
34 1 1.6508 3.0501 3.8996
35 1 0.8320 5.4460 5.9520
36 1 0.9098 3.7067 6.3220
37 1 -0.6230 4.5903 6.5168
38 1 -3.9405 4.2484 3.0539
39 1 -5.6530 4.5866 1.2873
40 1 -4.9375 4.8561 -1.0514
41 1 -0.9399 4.4890 -0.0027
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787087025.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:44
Heat of formation + Delta-G solvation = 6.322193 kcal
Electronic energy + Delta-G solvation = -26124.228758 eV
Core-core repulsion = 22391.354323 eV
Total energy + Delta-G solvation = -3732.874434 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.36605 -40.84626 -40.77735 -37.47749 -35.43871 -35.04950 -33.39553 -33.16238
-32.06307 -31.58731 -29.27366 -27.82928 -25.63452 -24.86057 -24.53695 -23.70195
-22.16010 -21.26128 -20.88135 -19.14484 -18.31875 -18.27844 -17.61080 -17.26931
-16.98971 -16.82488 -16.44172 -16.34831 -15.87383 -15.01191 -14.93799 -14.77890
-14.71294 -14.08378 -14.03260 -13.94650 -13.54917 -13.49947 -13.30481 -13.20144
-13.08253 -12.83626 -12.71156 -12.50736 -12.17969 -12.06519 -11.71454 -11.42173
-11.26804 -11.15980 -10.76830 -10.58293 -10.47943 -10.40237 -10.00241 -9.47973
-8.22767 -6.39362 -0.23884 0.34336 0.36849 1.08276 1.29760 1.44215
1.46113 1.57126 2.12748 2.22119 2.47377 2.88657 3.06880 3.10633
3.43724 3.68887 3.91915 3.99409 4.01198 4.16038 4.26898 4.38261
4.42376 4.42612 4.46299 4.51133 4.57231 4.64565 4.73229 4.86067
4.91188 5.00612 5.11449 5.20582 5.23903 5.26224 5.44159 5.56361
5.71998 5.75331 5.78958 6.03876 6.19835 6.31897 6.66875 7.05173
7.12591 7.33484 8.84035
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013363 B = 0.004220 C = 0.003476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2094.798139 B = 6633.871663 C = 8053.372766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.127 4.127
3 C 0.230 3.770
4 H 0.005 0.995
5 C -0.546 4.546
6 H 0.069 0.931
7 C 0.017 3.983
8 N -0.915 5.915
9 Si 0.980 3.020
10 H -0.267 1.267
11 H -0.281 1.281
12 H -0.265 1.265
13 O -0.358 6.358
14 C 0.524 3.476
15 O -0.538 6.538
16 C -0.305 4.305
17 C 0.153 3.847
18 N -0.353 5.353
19 C 0.084 3.916
20 N -0.291 5.291
21 C 0.163 3.837
22 C -0.096 4.096
23 C -0.048 4.048
24 C -0.170 4.170
25 C 0.098 3.902
26 N -0.521 5.521
27 C 0.143 3.857
28 H 0.033 0.967
29 H 0.032 0.968
30 H 0.057 0.943
31 H 0.085 0.915
32 H 0.047 0.953
33 H 0.269 0.731
34 H 0.226 0.774
35 H 0.097 0.903
36 H 0.125 0.875
37 H 0.104 0.896
38 H 0.156 0.844
39 H 0.181 0.819
40 H 0.188 0.812
41 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.798 7.658 16.747 21.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.165 4.165
3 C 0.177 3.823
4 H 0.023 0.977
5 C -0.584 4.584
6 H 0.087 0.913
7 C -0.183 4.183
8 N -0.553 5.553
9 Si 0.803 3.197
10 H -0.192 1.192
11 H -0.207 1.207
12 H -0.189 1.189
13 O -0.274 6.274
14 C 0.372 3.628
15 O -0.431 6.431
16 C -0.318 4.318
17 C 0.002 3.998
18 N -0.131 5.131
19 C -0.054 4.054
20 N -0.112 5.112
21 C -0.004 4.004
22 C -0.101 4.101
23 C -0.074 4.074
24 C -0.189 4.189
25 C -0.059 4.059
26 N -0.230 5.230
27 C -0.015 4.015
28 H 0.052 0.948
29 H 0.051 0.949
30 H 0.076 0.924
31 H 0.103 0.897
32 H 0.065 0.935
33 H 0.078 0.922
34 H 0.242 0.758
35 H 0.116 0.884
36 H 0.143 0.857
37 H 0.122 0.878
38 H 0.173 0.827
39 H 0.198 0.802
40 H 0.205 0.795
41 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -11.295 8.344 16.498 21.665
hybrid contribution 1.210 -0.788 -0.495 1.527
sum -10.085 7.556 16.003 20.369
Atomic orbital electron populations
1.21668 0.96639 1.00126 0.99877 1.21847 0.94058 0.98351 1.02242
1.20310 0.94401 0.89009 0.78600 0.97689 1.21330 0.90423 1.39725
1.06876 0.91305 1.25790 1.04064 0.94003 0.94398 1.70031 1.37379
1.38068 1.09866 0.85230 0.77918 0.79113 0.77435 1.19183 1.20671
1.18902 1.86477 1.35145 1.63330 1.42471 1.20334 0.79632 0.75724
0.87158 1.90756 1.55759 1.60026 1.36520 1.20518 0.99772 1.16531
0.94951 1.23558 0.97461 0.90988 0.87815 1.48606 1.12476 1.38983
1.13078 1.22552 1.04078 1.04921 0.73880 1.77233 1.04400 1.23387
1.06166 1.21604 0.92461 0.94749 0.91628 1.18810 0.92698 1.06330
0.92224 1.21898 0.90407 0.93525 1.01606 1.22444 1.02275 1.01315
0.92893 1.23565 0.92341 0.92905 0.97083 1.67765 1.02860 1.14384
1.37984 1.23043 0.99341 0.90866 0.88235 0.94756 0.94885 0.92413
0.89687 0.93468 0.92182 0.75779 0.88442 0.85700 0.87765 0.82659
0.80176 0.79535 0.84106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16
2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16
3 C 0.23 12.65 2.25 29.85 0.07 12.71 16
4 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16
5 C -0.55 -30.82 8.90 25.60 0.23 -30.59 16
6 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16
7 C 0.02 0.94 5.29 84.65 0.45 1.39 16
8 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16
9 Si 0.98 42.82 29.54 68.60 2.03 44.85 16
10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16
11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16
12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16
13 O -0.36 -17.22 9.65 -56.84 -0.55 -17.77 16
14 C 0.52 23.33 6.28 70.16 0.44 23.77 16
15 O -0.54 -26.49 9.66 19.70 0.19 -26.30 16
16 C -0.30 -10.77 6.27 -18.79 -0.12 -10.89 16
17 C 0.15 3.87 11.28 84.30 0.95 4.82 16
18 N -0.35 -7.55 3.95 -367.88 -1.45 -9.00 16
19 C 0.08 0.75 11.39 127.77 1.46 2.20 16
20 N -0.29 -8.10 12.48 -44.50 -0.56 -8.65 16
21 C 0.16 5.41 6.96 44.09 0.31 5.71 16
22 C -0.10 -3.19 5.74 -19.96 -0.11 -3.31 16
23 C -0.05 -1.19 9.92 22.69 0.23 -0.97 16
24 C -0.17 -3.48 10.10 22.33 0.23 -3.26 16
25 C 0.10 2.46 11.17 84.70 0.95 3.41 16
26 N -0.52 -18.47 10.35 -194.91 -2.02 -20.49 16
27 C 0.14 5.45 8.97 84.97 0.76 6.21 16
28 H 0.03 1.54 6.06 -2.38 -0.01 1.53 16
29 H 0.03 1.63 7.79 -2.38 -0.02 1.61 16
30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
31 H 0.08 4.77 5.95 -2.39 -0.01 4.75 16
32 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16
33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16
34 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16
35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16
36 H 0.12 0.40 8.13 -2.39 -0.02 0.38 16
37 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16
38 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16
39 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16
40 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16
41 H 0.14 6.24 5.69 -2.91 -0.02 6.22 16
Total: -1.00 -77.47 348.51 5.55 -71.93
By element:
Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.50 kcal
Atomic # 6 Polarization: -6.93 SS G_CDS: 6.61 Total: -0.32 kcal
Atomic # 7 Polarization: -87.10 SS G_CDS: -3.78 Total: -90.89 kcal
Atomic # 8 Polarization: -43.72 SS G_CDS: -0.36 Total: -44.07 kcal
Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal
Total: -77.47 5.55 -71.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787087025.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.248 kcal
(2) G-P(sol) polarization free energy of solvation -77.473 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.925 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.322 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds