Wall clock time and date at job start Tue Mar 31 2020 11:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47724 * 2 1 4 4 H 1.08997 * 109.46927 * 305.00335 * 3 2 1 5 5 C 1.50698 * 109.47608 * 184.99950 * 3 2 1 6 6 H 1.07998 * 120.00212 * 240.00008 * 5 3 2 7 7 C 1.37875 * 119.99952 * 59.99628 * 5 3 2 8 8 N 1.31518 * 120.00124 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99990 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46907 * 90.00525 * 9 7 5 11 11 H 1.48496 * 109.47210 * 210.00222 * 9 7 5 12 12 H 1.48495 * 109.47295 * 330.00251 * 9 7 5 13 13 O 1.45200 * 109.47072 * 64.99454 * 3 2 1 14 14 C 1.34773 * 117.00435 * 270.00781 * 13 3 2 15 15 O 1.21543 * 119.99671 * 359.97438 * 14 13 3 16 16 C 1.47137 * 120.00188 * 180.02562 * 14 13 3 17 17 C 1.38049 * 126.82196 * 0.02562 * 16 14 13 18 18 N 1.34118 * 107.88155 * 179.97438 * 17 16 14 19 19 C 1.46499 * 125.15410 * 180.02562 * 18 17 16 20 20 N 1.39765 * 109.69274 * 0.26072 * 18 17 16 21 21 C 1.31357 * 109.10269 * 359.54897 * 20 18 17 22 22 C 1.48287 * 126.52020 * 180.15921 * 21 20 18 23 23 C 1.39805 * 120.53883 * 325.32767 * 22 21 20 24 24 C 1.38405 * 118.30755 * 179.97438 * 23 22 21 25 25 C 1.38319 * 119.28614 * 359.97438 * 24 23 22 26 26 N 1.31888 * 121.04210 * 0.02562 * 25 24 23 27 27 C 1.31740 * 121.85448 * 359.72683 * 26 25 24 28 28 H 1.09006 * 109.46749 * 300.00303 * 1 2 3 29 29 H 1.09006 * 109.47079 * 59.99937 * 1 2 3 30 30 H 1.08999 * 109.47724 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99609 * 2 1 3 32 32 H 1.09006 * 109.47079 * 120.00063 * 2 1 3 33 33 H 0.96999 * 120.00418 * 179.97438 * 8 7 5 34 34 H 1.07998 * 126.05820 * 359.94065 * 17 16 14 35 35 H 1.09002 * 109.47391 * 89.99669 * 19 18 17 36 36 H 1.09001 * 109.46813 * 329.99725 * 19 18 17 37 37 H 1.09004 * 109.47041 * 209.99852 * 19 18 17 38 38 H 1.08002 * 120.85075 * 359.95263 * 23 22 21 39 39 H 1.07995 * 120.35742 * 180.02562 * 24 23 22 40 40 H 1.08008 * 119.48061 * 179.97438 * 25 24 23 41 41 H 1.07998 * 119.70817 * 180.29031 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1733 9 14 6.0051 0.8798 -1.3810 10 1 6.5538 -0.3523 -0.7597 11 1 6.3837 0.9212 -2.8163 12 1 6.5577 2.0716 -0.6888 13 8 1.6559 2.0917 1.2406 14 6 0.4680 2.7280 1.2560 15 8 -0.2277 2.7403 0.2594 16 6 0.0137 3.4087 2.4788 17 6 0.6863 3.4846 3.6820 18 7 -0.0707 4.1929 4.5329 19 6 0.2848 4.5039 5.9197 20 7 -1.2524 4.5848 3.8978 21 6 -1.2431 4.1419 2.6612 22 6 -2.3047 4.3399 1.6450 23 6 -3.6510 4.3696 2.0205 24 6 -4.6035 4.5577 1.0342 25 6 -4.1968 4.7095 -0.2791 26 7 -2.9188 4.6770 -0.6034 27 6 -1.9762 4.5053 0.3009 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0606 -2.9502 34 1 1.6508 3.0501 3.8996 35 1 0.8320 5.4460 5.9520 36 1 0.9098 3.7067 6.3220 37 1 -0.6230 4.5903 6.5168 38 1 -3.9405 4.2484 3.0539 39 1 -5.6530 4.5866 1.2873 40 1 -4.9375 4.8561 -1.0514 41 1 -0.9399 4.4890 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:44 Heat of formation + Delta-G solvation = 6.322193 kcal Electronic energy + Delta-G solvation = -26124.228758 eV Core-core repulsion = 22391.354323 eV Total energy + Delta-G solvation = -3732.874434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36605 -40.84626 -40.77735 -37.47749 -35.43871 -35.04950 -33.39553 -33.16238 -32.06307 -31.58731 -29.27366 -27.82928 -25.63452 -24.86057 -24.53695 -23.70195 -22.16010 -21.26128 -20.88135 -19.14484 -18.31875 -18.27844 -17.61080 -17.26931 -16.98971 -16.82488 -16.44172 -16.34831 -15.87383 -15.01191 -14.93799 -14.77890 -14.71294 -14.08378 -14.03260 -13.94650 -13.54917 -13.49947 -13.30481 -13.20144 -13.08253 -12.83626 -12.71156 -12.50736 -12.17969 -12.06519 -11.71454 -11.42173 -11.26804 -11.15980 -10.76830 -10.58293 -10.47943 -10.40237 -10.00241 -9.47973 -8.22767 -6.39362 -0.23884 0.34336 0.36849 1.08276 1.29760 1.44215 1.46113 1.57126 2.12748 2.22119 2.47377 2.88657 3.06880 3.10633 3.43724 3.68887 3.91915 3.99409 4.01198 4.16038 4.26898 4.38261 4.42376 4.42612 4.46299 4.51133 4.57231 4.64565 4.73229 4.86067 4.91188 5.00612 5.11449 5.20582 5.23903 5.26224 5.44159 5.56361 5.71998 5.75331 5.78958 6.03876 6.19835 6.31897 6.66875 7.05173 7.12591 7.33484 8.84035 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.004220 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.798139 B = 6633.871663 C = 8053.372766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C 0.230 3.770 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.524 3.476 15 O -0.538 6.538 16 C -0.305 4.305 17 C 0.153 3.847 18 N -0.353 5.353 19 C 0.084 3.916 20 N -0.291 5.291 21 C 0.163 3.837 22 C -0.096 4.096 23 C -0.048 4.048 24 C -0.170 4.170 25 C 0.098 3.902 26 N -0.521 5.521 27 C 0.143 3.857 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.188 0.812 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 7.658 16.747 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.165 4.165 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.189 1.189 13 O -0.274 6.274 14 C 0.372 3.628 15 O -0.431 6.431 16 C -0.318 4.318 17 C 0.002 3.998 18 N -0.131 5.131 19 C -0.054 4.054 20 N -0.112 5.112 21 C -0.004 4.004 22 C -0.101 4.101 23 C -0.074 4.074 24 C -0.189 4.189 25 C -0.059 4.059 26 N -0.230 5.230 27 C -0.015 4.015 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.173 0.827 39 H 0.198 0.802 40 H 0.205 0.795 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.295 8.344 16.498 21.665 hybrid contribution 1.210 -0.788 -0.495 1.527 sum -10.085 7.556 16.003 20.369 Atomic orbital electron populations 1.21668 0.96639 1.00126 0.99877 1.21847 0.94058 0.98351 1.02242 1.20310 0.94401 0.89009 0.78600 0.97689 1.21330 0.90423 1.39725 1.06876 0.91305 1.25790 1.04064 0.94003 0.94398 1.70031 1.37379 1.38068 1.09866 0.85230 0.77918 0.79113 0.77435 1.19183 1.20671 1.18902 1.86477 1.35145 1.63330 1.42471 1.20334 0.79632 0.75724 0.87158 1.90756 1.55759 1.60026 1.36520 1.20518 0.99772 1.16531 0.94951 1.23558 0.97461 0.90988 0.87815 1.48606 1.12476 1.38983 1.13078 1.22552 1.04078 1.04921 0.73880 1.77233 1.04400 1.23387 1.06166 1.21604 0.92461 0.94749 0.91628 1.18810 0.92698 1.06330 0.92224 1.21898 0.90407 0.93525 1.01606 1.22444 1.02275 1.01315 0.92893 1.23565 0.92341 0.92905 0.97083 1.67765 1.02860 1.14384 1.37984 1.23043 0.99341 0.90866 0.88235 0.94756 0.94885 0.92413 0.89687 0.93468 0.92182 0.75779 0.88442 0.85700 0.87765 0.82659 0.80176 0.79535 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16 2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16 3 C 0.23 12.65 2.25 29.85 0.07 12.71 16 4 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16 5 C -0.55 -30.82 8.90 25.60 0.23 -30.59 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.98 42.82 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 O -0.36 -17.22 9.65 -56.84 -0.55 -17.77 16 14 C 0.52 23.33 6.28 70.16 0.44 23.77 16 15 O -0.54 -26.49 9.66 19.70 0.19 -26.30 16 16 C -0.30 -10.77 6.27 -18.79 -0.12 -10.89 16 17 C 0.15 3.87 11.28 84.30 0.95 4.82 16 18 N -0.35 -7.55 3.95 -367.88 -1.45 -9.00 16 19 C 0.08 0.75 11.39 127.77 1.46 2.20 16 20 N -0.29 -8.10 12.48 -44.50 -0.56 -8.65 16 21 C 0.16 5.41 6.96 44.09 0.31 5.71 16 22 C -0.10 -3.19 5.74 -19.96 -0.11 -3.31 16 23 C -0.05 -1.19 9.92 22.69 0.23 -0.97 16 24 C -0.17 -3.48 10.10 22.33 0.23 -3.26 16 25 C 0.10 2.46 11.17 84.70 0.95 3.41 16 26 N -0.52 -18.47 10.35 -194.91 -2.02 -20.49 16 27 C 0.14 5.45 8.97 84.97 0.76 6.21 16 28 H 0.03 1.54 6.06 -2.38 -0.01 1.53 16 29 H 0.03 1.63 7.79 -2.38 -0.02 1.61 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.08 4.77 5.95 -2.39 -0.01 4.75 16 32 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.23 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.12 0.40 8.13 -2.39 -0.02 0.38 16 37 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 41 H 0.14 6.24 5.69 -2.91 -0.02 6.22 16 Total: -1.00 -77.47 348.51 5.55 -71.93 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.50 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.61 Total: -0.32 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -3.78 Total: -90.89 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.36 Total: -44.07 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -77.47 5.55 -71.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.248 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds