Wall clock time and date at job start Tue Mar 31 2020 11:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47225 * 2 1 4 4 H 1.09000 * 109.46616 * 304.35456 * 3 2 1 5 5 C 1.50702 * 109.47103 * 184.35863 * 3 2 1 6 6 H 1.08002 * 119.99835 * 245.53596 * 5 3 2 7 7 C 1.37882 * 120.00277 * 65.53537 * 5 3 2 8 8 N 1.31514 * 119.99901 * 9.31991 * 7 5 3 9 9 Si 1.86791 * 120.00118 * 189.31959 * 7 5 3 10 10 H 1.48504 * 109.47356 * 94.98979 * 9 7 5 11 11 H 1.48501 * 109.47317 * 214.99053 * 9 7 5 12 12 H 1.48508 * 109.47230 * 334.99266 * 9 7 5 13 13 O 1.45198 * 109.47228 * 64.35372 * 3 2 1 14 14 C 1.34747 * 116.99994 * 270.00282 * 13 3 2 15 15 O 1.21518 * 120.00368 * 359.97438 * 14 13 3 16 16 C 1.47379 * 119.99668 * 179.97438 * 14 13 3 17 17 N 1.34457 * 125.77981 * 359.69631 * 16 14 13 18 18 N 1.28751 * 109.56778 * 179.81410 * 17 16 14 19 19 N 1.40208 * 108.40416 * 0.43990 * 18 17 16 20 20 C 1.40225 * 126.60389 * 179.69261 * 19 18 17 21 21 C 1.38825 * 120.06648 * 41.72446 * 20 19 18 22 22 C 1.38121 * 119.93597 * 179.74550 * 21 20 19 23 23 C 1.38278 * 120.06296 * 0.53401 * 22 21 20 24 24 C 1.38279 * 120.13190 * 359.73437 * 23 22 21 25 25 C 1.38116 * 120.06500 * 359.97438 * 24 23 22 26 26 C 1.35048 * 106.79257 * 359.72589 * 19 18 17 27 27 C 1.50698 * 126.60423 * 179.97438 * 26 19 18 28 28 H 1.09003 * 109.47402 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.47263 * 60.00223 * 1 2 3 30 30 H 1.09006 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46983 * 239.99587 * 2 1 3 32 32 H 1.09001 * 109.46779 * 119.99978 * 2 1 3 33 33 H 0.96998 * 119.99891 * 179.97438 * 8 7 5 34 34 H 1.08002 * 120.03444 * 0.02562 * 21 20 19 35 35 H 1.07998 * 119.97079 * 180.26742 * 22 21 20 36 36 H 1.08001 * 119.93323 * 179.76897 * 23 22 21 37 37 H 1.08001 * 119.96413 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.03449 * 180.02562 * 25 24 23 39 39 H 1.09005 * 109.46554 * 272.81956 * 27 26 19 40 40 H 1.08997 * 109.47292 * 32.81771 * 27 26 19 41 41 H 1.08996 * 109.47094 * 152.82940 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6143 1.9782 -0.8484 5 6 3.5431 1.4438 -0.1080 6 1 4.1431 1.8099 0.7120 7 6 4.1525 0.9776 -1.2536 8 7 3.4301 0.7045 -2.3181 9 14 6.0040 0.7340 -1.2938 10 1 6.3244 -0.6801 -0.9728 11 1 6.5174 1.0627 -2.6479 12 1 6.6425 1.6256 -0.2924 13 8 1.6427 2.0963 1.2341 14 6 0.4549 2.7325 1.2344 15 8 -0.2300 2.7411 0.2307 16 6 -0.0135 3.4179 2.4521 17 7 0.6442 3.4769 3.6234 18 7 -0.0460 4.1562 4.4718 19 7 -1.2321 4.5688 3.8482 20 6 -2.2613 5.3256 4.4265 21 6 -1.9557 6.4043 5.2452 22 6 -2.9716 7.1511 5.8092 23 6 -4.2919 6.8184 5.5679 24 6 -4.5993 5.7411 4.7574 25 6 -3.5878 4.9944 4.1858 26 6 -1.1928 4.0965 2.5836 27 6 -2.2465 4.2814 1.5222 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8588 0.3769 -3.1242 34 1 -0.9246 6.6621 5.4374 35 1 -2.7345 7.9930 6.4427 36 1 -5.0845 7.4015 6.0130 37 1 -5.6315 5.4840 4.5704 38 1 -3.8285 4.1533 3.5524 39 1 -2.9904 3.4892 1.6070 40 1 -2.7298 5.2493 1.6547 41 1 -1.7814 4.2390 0.5374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:23 Heat of formation + Delta-G solvation = 33.852868 kcal Electronic energy + Delta-G solvation = -25631.438048 eV Core-core repulsion = 21899.757434 eV Total energy + Delta-G solvation = -3731.680614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.48671 -39.71159 -39.24246 -35.84658 -34.98849 -33.38839 -32.64185 -31.48141 -31.39620 -30.01340 -28.19561 -27.14546 -24.23250 -24.14191 -23.21834 -22.66150 -21.20077 -20.45823 -19.62452 -18.43567 -17.09753 -16.64457 -16.52069 -16.22575 -15.59761 -15.36135 -14.92781 -14.73396 -14.42138 -14.22392 -14.04196 -13.55199 -13.19978 -13.10815 -12.95581 -12.83450 -12.26344 -12.09744 -12.03367 -11.72919 -11.53570 -11.26361 -11.25937 -11.17950 -10.95089 -10.82800 -10.61777 -10.22175 -9.88529 -9.73741 -9.55053 -9.37830 -9.32051 -8.96220 -8.79515 -8.42087 -6.16525 -4.19119 0.29870 0.78936 1.30798 1.80987 1.82753 3.13406 3.29079 3.34751 3.38354 3.53536 3.55958 4.11195 4.25026 4.35813 4.37751 4.52496 4.57728 4.74669 4.81272 4.95441 5.07579 5.16882 5.22895 5.30316 5.44936 5.52628 5.76148 5.82008 5.85662 5.92636 6.03494 6.17710 6.19729 6.27556 6.42130 6.59045 6.86445 6.94268 7.14151 7.17848 7.59350 7.70894 7.85229 7.95411 8.15853 8.63306 8.94297 9.44519 10.92681 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.002877 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.665779 B = 9729.327686 C =10283.117206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.057 0.943 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.907 3.093 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.333 6.333 14 C 0.545 3.455 15 O -0.509 6.509 16 C -0.071 4.071 17 N -0.168 5.168 18 N -0.065 5.065 19 N -0.324 5.324 20 C 0.133 3.867 21 C -0.097 4.097 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.115 4.115 26 C 0.127 3.873 27 C -0.101 4.101 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.301 11.429 12.820 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.734 3.266 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.195 1.195 13 O -0.247 6.247 14 C 0.387 3.613 15 O -0.399 6.399 16 C -0.208 4.208 17 N -0.042 5.042 18 N -0.043 5.043 19 N -0.104 5.104 20 C 0.043 3.957 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.135 4.135 26 C -0.007 4.007 27 C -0.159 4.159 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.555 11.311 13.565 24.903 hybrid contribution 0.384 -0.242 -0.885 0.995 sum -17.171 11.069 12.680 24.045 Atomic orbital electron populations 1.21869 0.98126 0.99189 1.00940 1.21930 0.92969 0.99345 1.02411 1.20781 0.95177 0.88499 0.78900 0.92566 1.21024 0.89424 1.43455 1.02067 0.91131 1.24877 0.99111 0.95168 0.94565 1.69989 1.35985 1.44178 1.02238 0.86329 0.84089 0.78718 0.77460 1.20367 1.21081 1.19509 1.86641 1.32477 1.61496 1.44123 1.19215 0.81339 0.76293 0.84493 1.90769 1.56560 1.59383 1.33189 1.20474 0.94982 1.10514 0.94803 1.74799 1.21758 1.08141 0.99471 1.82165 0.90123 1.15141 1.16910 1.47561 1.16478 1.37745 1.08663 1.17523 0.85407 0.93133 0.99673 1.21113 1.01169 0.93002 0.96452 1.21122 0.92182 0.99546 0.99321 1.21363 0.96777 0.97078 0.97736 1.21067 0.99166 0.95080 0.96718 1.21181 0.90342 1.00802 1.01188 1.21954 0.97576 0.94595 0.86559 1.20874 0.95357 1.02802 0.96864 0.94792 0.92498 0.94708 0.89127 0.93491 0.92466 0.84512 0.84648 0.85038 0.84592 0.84699 0.88874 0.90326 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.56 37.16 0.32 -2.77 16 2 C -0.13 -3.17 5.54 -26.73 -0.15 -3.32 16 3 C 0.22 5.89 2.12 -27.88 -0.06 5.83 16 4 H 0.06 1.65 7.10 -51.93 -0.37 1.28 16 5 C -0.52 -14.92 8.82 -34.44 -0.30 -15.22 16 6 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 7 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 8 N -0.89 -25.33 12.16 55.43 0.67 -24.65 16 9 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.33 -8.40 9.80 -40.62 -0.40 -8.80 16 14 C 0.54 11.99 6.38 34.45 0.22 12.21 16 15 O -0.51 -11.21 11.85 -19.28 -0.23 -11.44 16 16 C -0.07 -1.36 7.02 -83.56 -0.59 -1.95 16 17 N -0.17 -3.30 12.39 32.84 0.41 -2.90 16 18 N -0.07 -1.11 13.64 60.35 0.82 -0.29 16 19 N -0.32 -4.58 3.71 -6.71 -0.02 -4.61 16 20 C 0.13 1.43 6.17 -83.58 -0.52 0.92 16 21 C -0.10 -0.89 9.86 -39.41 -0.39 -1.28 16 22 C -0.10 -0.66 10.04 -39.61 -0.40 -1.06 16 23 C -0.11 -0.60 10.04 -39.55 -0.40 -0.99 16 24 C -0.10 -0.60 10.04 -39.61 -0.40 -0.99 16 25 C -0.11 -0.94 8.59 -39.41 -0.34 -1.27 16 26 C 0.13 1.90 6.84 -81.74 -0.56 1.34 16 27 C -0.10 -1.12 8.32 36.00 0.30 -0.82 16 28 H 0.03 0.71 6.07 -51.93 -0.32 0.39 16 29 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 2.38 6.81 -51.93 -0.35 2.03 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.98 6.79 -52.49 -0.36 0.62 16 39 H 0.09 0.85 7.80 -51.93 -0.40 0.45 16 40 H 0.08 0.67 7.47 -51.93 -0.39 0.28 16 41 H 0.12 1.55 6.28 -51.93 -0.33 1.22 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -32.58 348.66 -6.86 -39.44 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.00 Total: -0.78 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.35 Total: -7.65 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 1.88 Total: -32.45 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.63 Total: -20.24 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.58 -6.86 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.297 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds