Wall clock time and date at job start Tue Mar 31 2020 11:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47225 * 2 1 4 4 H 1.09000 * 109.46616 * 304.35456 * 3 2 1 5 5 C 1.50702 * 109.47103 * 184.35863 * 3 2 1 6 6 H 1.08002 * 119.99835 * 245.53596 * 5 3 2 7 7 C 1.37882 * 120.00277 * 65.53537 * 5 3 2 8 8 N 1.31514 * 119.99901 * 9.31991 * 7 5 3 9 9 Si 1.86791 * 120.00118 * 189.31959 * 7 5 3 10 10 H 1.48504 * 109.47356 * 94.98979 * 9 7 5 11 11 H 1.48501 * 109.47317 * 214.99053 * 9 7 5 12 12 H 1.48508 * 109.47230 * 334.99266 * 9 7 5 13 13 O 1.45198 * 109.47228 * 64.35372 * 3 2 1 14 14 C 1.34747 * 116.99994 * 270.00282 * 13 3 2 15 15 O 1.21518 * 120.00368 * 359.97438 * 14 13 3 16 16 C 1.47379 * 119.99668 * 179.97438 * 14 13 3 17 17 N 1.34457 * 125.77981 * 359.69631 * 16 14 13 18 18 N 1.28751 * 109.56778 * 179.81410 * 17 16 14 19 19 N 1.40208 * 108.40416 * 0.43990 * 18 17 16 20 20 C 1.40225 * 126.60389 * 179.69261 * 19 18 17 21 21 C 1.38825 * 120.06648 * 41.72446 * 20 19 18 22 22 C 1.38121 * 119.93597 * 179.74550 * 21 20 19 23 23 C 1.38278 * 120.06296 * 0.53401 * 22 21 20 24 24 C 1.38279 * 120.13190 * 359.73437 * 23 22 21 25 25 C 1.38116 * 120.06500 * 359.97438 * 24 23 22 26 26 C 1.35048 * 106.79257 * 359.72589 * 19 18 17 27 27 C 1.50698 * 126.60423 * 179.97438 * 26 19 18 28 28 H 1.09003 * 109.47402 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.47263 * 60.00223 * 1 2 3 30 30 H 1.09006 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46983 * 239.99587 * 2 1 3 32 32 H 1.09001 * 109.46779 * 119.99978 * 2 1 3 33 33 H 0.96998 * 119.99891 * 179.97438 * 8 7 5 34 34 H 1.08002 * 120.03444 * 0.02562 * 21 20 19 35 35 H 1.07998 * 119.97079 * 180.26742 * 22 21 20 36 36 H 1.08001 * 119.93323 * 179.76897 * 23 22 21 37 37 H 1.08001 * 119.96413 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.03449 * 180.02562 * 25 24 23 39 39 H 1.09005 * 109.46554 * 272.81956 * 27 26 19 40 40 H 1.08997 * 109.47292 * 32.81771 * 27 26 19 41 41 H 1.08996 * 109.47094 * 152.82940 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6143 1.9782 -0.8484 5 6 3.5431 1.4438 -0.1080 6 1 4.1431 1.8099 0.7120 7 6 4.1525 0.9776 -1.2536 8 7 3.4301 0.7045 -2.3181 9 14 6.0040 0.7340 -1.2938 10 1 6.3244 -0.6801 -0.9728 11 1 6.5174 1.0627 -2.6479 12 1 6.6425 1.6256 -0.2924 13 8 1.6427 2.0963 1.2341 14 6 0.4549 2.7325 1.2344 15 8 -0.2300 2.7411 0.2307 16 6 -0.0135 3.4179 2.4521 17 7 0.6442 3.4769 3.6234 18 7 -0.0460 4.1562 4.4718 19 7 -1.2321 4.5688 3.8482 20 6 -2.2613 5.3256 4.4265 21 6 -1.9557 6.4043 5.2452 22 6 -2.9716 7.1511 5.8092 23 6 -4.2919 6.8184 5.5679 24 6 -4.5993 5.7411 4.7574 25 6 -3.5878 4.9944 4.1858 26 6 -1.1928 4.0965 2.5836 27 6 -2.2465 4.2814 1.5222 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8588 0.3769 -3.1242 34 1 -0.9246 6.6621 5.4374 35 1 -2.7345 7.9930 6.4427 36 1 -5.0845 7.4015 6.0130 37 1 -5.6315 5.4840 4.5704 38 1 -3.8285 4.1533 3.5524 39 1 -2.9904 3.4892 1.6070 40 1 -2.7298 5.2493 1.6547 41 1 -1.7814 4.2390 0.5374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:23 Heat of formation + Delta-G solvation = 14.732622 kcal Electronic energy + Delta-G solvation = -25632.267164 eV Core-core repulsion = 21899.757434 eV Total energy + Delta-G solvation = -3732.509731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.72375 -41.18967 -40.21200 -37.69905 -36.04194 -35.40739 -33.78663 -33.39699 -32.03005 -30.89196 -29.56376 -28.93562 -25.74291 -25.18752 -24.71385 -23.65820 -22.41507 -21.81378 -21.35520 -19.70696 -18.74382 -18.07544 -17.73852 -17.53542 -17.05442 -16.82798 -16.44663 -15.82989 -15.61613 -15.17228 -14.91994 -14.77218 -14.61744 -14.43863 -14.08252 -13.96384 -13.77148 -13.45867 -13.37557 -13.19061 -13.08640 -12.83379 -12.69770 -12.52947 -12.51168 -12.38371 -12.14891 -11.82793 -11.75067 -11.55354 -11.36316 -10.84063 -10.57718 -10.49665 -10.08740 -9.77604 -8.30607 -6.42688 -0.58265 0.23729 0.27224 0.45046 0.76944 1.40650 1.42341 1.53754 1.86445 1.91607 2.39577 2.60431 2.98234 3.00483 3.32549 3.49856 3.63198 3.79863 3.94557 4.16622 4.28059 4.32820 4.36841 4.38461 4.41826 4.46148 4.48873 4.54404 4.62992 4.82992 4.94379 4.99831 5.08200 5.20501 5.22619 5.26274 5.32396 5.43702 5.47368 5.51788 5.60888 5.83457 5.88265 6.07520 6.53303 6.65586 6.94941 7.26705 8.79020 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.002877 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.665779 B = 9729.327686 C =10283.117206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.223 3.777 4 H 0.023 0.977 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.975 3.025 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.270 1.270 13 O -0.353 6.353 14 C 0.543 3.457 15 O -0.515 6.515 16 C -0.108 4.108 17 N -0.204 5.204 18 N -0.078 5.078 19 N -0.305 5.305 20 C 0.088 3.912 21 C -0.112 4.112 22 C -0.102 4.102 23 C -0.096 4.096 24 C -0.096 4.096 25 C -0.115 4.115 26 C 0.149 3.851 27 C -0.097 4.097 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.272 0.728 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.088 12.544 13.945 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.170 3.830 4 H 0.041 0.959 5 C -0.591 4.591 6 H 0.076 0.924 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.798 3.202 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.195 1.195 13 O -0.268 6.268 14 C 0.386 3.614 15 O -0.405 6.405 16 C -0.245 4.245 17 N -0.078 5.078 18 N -0.057 5.057 19 N -0.085 5.085 20 C -0.001 4.001 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.135 4.135 26 C 0.012 3.988 27 C -0.155 4.155 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.374 12.446 14.717 28.046 hybrid contribution 1.009 -0.396 -1.115 1.555 sum -19.364 12.050 13.602 26.556 Atomic orbital electron populations 1.21720 0.95579 1.01007 1.00465 1.21777 0.95219 0.97636 1.01361 1.20519 0.94498 0.89358 0.78583 0.95926 1.21265 0.90521 1.44910 1.02448 0.92365 1.25724 1.03931 0.94196 0.93787 1.70079 1.38005 1.44044 1.02714 0.85295 0.78065 0.79034 0.77785 1.19137 1.19925 1.19453 1.86616 1.34567 1.62469 1.43193 1.19593 0.80267 0.75888 0.85654 1.90743 1.56354 1.59642 1.33753 1.20267 0.97092 1.13157 0.93974 1.74754 1.23285 1.09624 1.00144 1.82032 0.91507 1.15238 1.16894 1.47718 1.16082 1.36551 1.08115 1.18005 0.85473 0.94425 1.02246 1.21203 1.01563 0.93471 0.96922 1.21447 0.92102 0.99599 0.98881 1.21849 0.97046 0.96426 0.96101 1.21494 1.00042 0.94335 0.95553 1.21395 0.89437 1.01364 1.01339 1.22375 0.96626 0.92419 0.87338 1.21041 0.94643 1.05572 0.94266 0.94694 0.93441 0.91648 0.90980 0.93466 0.91908 0.85858 0.82255 0.81554 0.81358 0.83858 0.86168 0.87063 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.56 71.98 0.62 -5.04 16 2 C -0.12 -6.22 5.54 30.59 0.17 -6.05 16 3 C 0.22 12.65 2.12 29.85 0.06 12.71 16 4 H 0.02 1.42 7.10 -2.39 -0.02 1.40 16 5 C -0.55 -33.05 8.82 25.60 0.23 -32.83 16 6 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 7 C 0.02 1.38 5.17 84.66 0.44 1.81 16 8 N -0.91 -53.20 12.16 21.45 0.26 -52.94 16 9 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 O -0.35 -18.89 9.80 -56.57 -0.55 -19.44 16 14 C 0.54 25.14 6.38 70.23 0.45 25.59 16 15 O -0.52 -23.62 11.85 19.78 0.23 -23.38 16 16 C -0.11 -4.30 7.02 40.79 0.29 -4.01 16 17 N -0.20 -8.50 12.39 -50.01 -0.62 -9.12 16 18 N -0.08 -2.79 13.64 37.02 0.50 -2.28 16 19 N -0.31 -8.62 3.71 -175.14 -0.65 -9.28 16 20 C 0.09 1.76 6.17 38.08 0.23 2.00 16 21 C -0.11 -1.91 9.86 22.38 0.22 -1.69 16 22 C -0.10 -0.97 10.04 22.25 0.22 -0.75 16 23 C -0.10 -0.57 10.04 22.29 0.22 -0.35 16 24 C -0.10 -0.68 10.04 22.25 0.22 -0.46 16 25 C -0.12 -1.53 8.59 22.38 0.19 -1.34 16 26 C 0.15 4.45 6.84 41.70 0.29 4.74 16 27 C -0.10 -2.02 8.32 71.24 0.59 -1.43 16 28 H 0.03 1.48 6.07 -2.39 -0.01 1.46 16 29 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.07 3.92 6.81 -2.39 -0.02 3.90 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.17 -0.09 8.06 -2.91 -0.02 -0.12 16 37 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 38 H 0.14 1.61 6.79 -2.91 -0.02 1.59 16 39 H 0.12 1.89 7.80 -2.38 -0.02 1.87 16 40 H 0.11 1.59 7.47 -2.39 -0.02 1.57 16 41 H 0.10 2.56 6.28 -2.39 -0.02 2.54 16 Total: -1.00 -75.74 348.66 6.70 -69.04 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.06 Total: 7.93 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.44 Total: -7.09 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -0.50 Total: -73.61 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.32 Total: -42.83 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -75.74 6.70 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.768 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds