Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.08997 * 109.47130 * 305.45460 * 3 2 1 5 5 C 1.50701 * 109.46995 * 185.44645 * 3 2 1 6 6 H 1.08001 * 120.00018 * 245.36631 * 5 3 2 7 7 C 1.37880 * 119.99671 * 65.37747 * 5 3 2 8 8 N 1.31510 * 119.99978 * 355.70118 * 7 5 3 9 9 Si 1.86803 * 119.99714 * 175.69925 * 7 5 3 10 10 H 1.48499 * 109.47213 * 94.99598 * 9 7 5 11 11 H 1.48500 * 109.47041 * 214.99576 * 9 7 5 12 12 H 1.48497 * 109.47066 * 334.99465 * 9 7 5 13 13 O 1.45199 * 109.46639 * 65.45015 * 3 2 1 14 14 C 1.34731 * 117.00392 * 269.99503 * 13 3 2 15 15 O 1.21484 * 119.99374 * 0.02562 * 14 13 3 16 16 C 1.47711 * 120.00461 * 179.97438 * 14 13 3 17 17 N 1.34600 * 126.02645 * 359.97438 * 16 14 13 18 18 C 1.30847 * 107.29211 * 180.02562 * 17 16 14 19 19 C 1.50698 * 126.20360 * 179.73482 * 18 17 16 20 20 N 1.34913 * 107.59996 * 359.97438 * 18 17 16 21 21 C 1.40142 * 125.76678 * 179.97438 * 20 18 17 22 22 C 1.38847 * 120.06708 * 221.84502 * 21 20 18 23 23 C 1.38117 * 119.93136 * 179.75371 * 22 21 20 24 24 C 1.38289 * 120.06489 * 0.52552 * 23 22 21 25 25 C 1.38280 * 120.13616 * 359.75064 * 24 23 22 26 26 C 1.38110 * 120.06995 * 359.97438 * 25 24 23 27 27 N 1.28854 * 108.46279 * 0.02562 * 20 18 17 28 28 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47408 * 299.99450 * 1 2 3 30 30 H 1.09002 * 109.47336 * 59.99762 * 1 2 3 31 31 H 1.09005 * 109.46698 * 240.00343 * 2 1 3 32 32 H 1.09000 * 109.47641 * 120.00676 * 2 1 3 33 33 H 0.97005 * 119.99402 * 180.02562 * 8 7 5 34 34 H 1.09011 * 109.47001 * 85.29943 * 19 18 17 35 35 H 1.08990 * 109.47794 * 205.30074 * 19 18 17 36 36 H 1.09006 * 109.46909 * 325.30765 * 19 18 17 37 37 H 1.08003 * 120.03417 * 0.02562 * 22 21 20 38 38 H 1.07995 * 119.97070 * 180.27549 * 23 22 21 39 39 H 1.07995 * 119.92727 * 179.77212 * 24 23 22 40 40 H 1.07995 * 119.96361 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.03797 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8371 5 6 3.5410 1.4445 -0.1349 6 1 4.1554 1.8080 0.6755 7 6 4.1297 0.9826 -1.2929 8 7 3.3873 0.4621 -2.2456 9 14 5.9817 1.0961 -1.5087 10 1 6.6073 -0.1870 -1.0992 11 1 6.2982 1.3685 -2.9337 12 1 6.5118 2.1968 -0.6646 13 8 1.6650 2.0883 1.2452 14 6 0.4777 2.7244 1.2711 15 8 -0.2254 2.7387 0.2804 16 6 0.0302 3.4035 2.5042 17 7 0.7075 3.4625 3.6658 18 6 -0.0222 4.1494 4.5071 19 6 0.3309 4.4690 5.9368 20 7 -1.1505 4.5152 3.8642 21 6 -2.1994 5.2654 4.4129 22 6 -3.5169 4.9158 4.1489 23 6 -4.5485 5.6540 4.6952 24 6 -4.2701 6.7468 5.4957 25 6 -2.9589 7.1008 5.7558 26 6 -1.9231 6.3632 5.2170 27 7 -1.1011 4.0574 2.6608 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8016 0.1367 -3.0601 34 1 0.9479 5.3672 5.9667 35 1 -0.5822 4.6363 6.5080 36 1 0.8828 3.6347 6.3700 37 1 -3.7349 4.0649 3.5204 38 1 -5.5735 5.3801 4.4939 39 1 -5.0784 7.3247 5.9188 40 1 -2.7447 7.9545 6.3817 41 1 -0.8992 6.6399 5.4208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = 35.420282 kcal Electronic energy + Delta-G solvation = -25485.948233 eV Core-core repulsion = 21754.335587 eV Total energy + Delta-G solvation = -3731.612646 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.69676 -39.73268 -39.28897 -35.78960 -34.73912 -33.43966 -33.37983 -31.46951 -31.37067 -30.21644 -28.27529 -27.34889 -25.33161 -23.55590 -23.17504 -22.54371 -21.28933 -20.41703 -19.52582 -18.52473 -17.30445 -16.96035 -16.68644 -16.39014 -15.68488 -15.37127 -14.94793 -14.82990 -14.55843 -14.18052 -14.04263 -13.58323 -13.32126 -13.09207 -12.85604 -12.80371 -12.36459 -12.14172 -11.93881 -11.60388 -11.44470 -11.31937 -11.15903 -10.93496 -10.78780 -10.60494 -10.41307 -10.23886 -9.95781 -9.74215 -9.70910 -9.54639 -9.31682 -8.96768 -8.82464 -8.40083 -6.14735 -4.20398 0.38959 0.79057 1.52746 1.96659 2.11078 3.11690 3.26789 3.29285 3.35320 3.42810 3.62543 3.97089 4.21462 4.34403 4.37129 4.45855 4.58570 4.81005 4.86561 5.08914 5.13834 5.18075 5.20143 5.32810 5.44908 5.57238 5.76298 5.78289 5.93147 6.00208 6.19951 6.26820 6.32575 6.36123 6.48966 6.62659 6.88948 6.97876 7.20113 7.21461 7.63602 7.74618 7.87571 8.01036 8.17268 8.63577 8.92806 9.44217 10.93083 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002881 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.725479 B = 9716.961445 C =10331.725316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.220 3.780 4 H 0.052 0.948 5 C -0.519 4.519 6 H 0.071 0.929 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.329 6.329 14 C 0.554 3.446 15 O -0.490 6.490 16 C 0.183 3.817 17 N -0.449 5.449 18 C 0.213 3.787 19 C -0.072 4.072 20 N -0.259 5.259 21 C 0.127 3.873 22 C -0.094 4.094 23 C -0.103 4.103 24 C -0.109 4.109 25 C -0.103 4.103 26 C -0.111 4.111 27 N -0.249 5.249 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 12.038 19.433 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.557 4.557 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.243 6.243 14 C 0.393 3.607 15 O -0.375 6.375 16 C -0.095 4.095 17 N -0.174 5.174 18 C -0.060 4.060 19 C -0.131 4.131 20 N -0.050 5.050 21 C 0.037 3.963 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.132 4.132 27 N -0.087 5.087 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.318 11.761 18.367 26.089 hybrid contribution 0.783 0.046 -0.215 0.813 sum -13.535 11.807 18.151 25.536 Atomic orbital electron populations 1.21879 0.98349 0.99172 1.00801 1.22010 0.92667 0.99156 1.03202 1.20862 0.95450 0.88863 0.78047 0.93021 1.21026 0.89391 1.43368 1.01916 0.91063 1.24890 0.99231 0.94653 0.95158 1.69925 1.35590 1.39644 1.07367 0.86262 0.83839 0.78613 0.77463 1.20429 1.20961 1.19516 1.86637 1.31889 1.61624 1.44100 1.18712 0.81769 0.76750 0.83459 1.90844 1.55151 1.57816 1.33700 1.22894 0.89850 1.02354 0.94395 1.71494 1.28251 1.17596 1.00100 1.25164 0.84580 0.97586 0.98719 1.20437 1.03128 1.04540 0.85024 1.44529 1.15319 1.37541 1.07611 1.17555 0.85831 0.93547 0.99391 1.21181 0.90302 1.00623 0.99272 1.21142 0.99227 0.95039 0.96785 1.21375 0.96998 0.96780 0.97606 1.21050 0.91992 0.99474 0.99641 1.21114 1.01064 0.92930 0.98049 1.74486 1.21271 1.13753 0.99194 0.94629 0.95055 0.92663 0.87648 0.93657 0.92402 0.88864 0.89826 0.88048 0.84474 0.84615 0.85000 0.84520 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.57 37.16 0.32 -3.02 16 2 C -0.13 -3.40 5.52 -26.73 -0.15 -3.55 16 3 C 0.22 6.11 2.19 -27.88 -0.06 6.05 16 4 H 0.05 1.57 7.16 -51.93 -0.37 1.19 16 5 C -0.52 -14.99 8.83 -34.44 -0.30 -15.29 16 6 H 0.07 2.05 7.82 -52.49 -0.41 1.64 16 7 C 0.06 1.77 5.34 -17.82 -0.10 1.67 16 8 N -0.89 -25.53 11.53 55.43 0.64 -24.89 16 9 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 O -0.33 -8.61 9.82 -40.58 -0.40 -9.00 16 14 C 0.55 13.46 6.44 34.60 0.22 13.68 16 15 O -0.49 -12.56 14.27 -19.25 -0.27 -12.84 16 16 C 0.18 3.86 7.99 -156.30 -1.25 2.61 16 17 N -0.45 -8.52 11.42 -8.49 -0.10 -8.61 16 18 C 0.21 3.04 7.78 -155.25 -1.21 1.83 16 19 C -0.07 -0.58 8.92 36.00 0.32 -0.26 16 20 N -0.26 -3.81 3.44 -7.99 -0.03 -3.84 16 21 C 0.13 1.39 6.02 -83.60 -0.50 0.89 16 22 C -0.09 -0.92 9.78 -39.40 -0.39 -1.31 16 23 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 24 C -0.11 -0.58 10.04 -39.55 -0.40 -0.98 16 25 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 26 C -0.11 -0.85 8.28 -39.40 -0.33 -1.18 16 27 N -0.25 -4.70 11.86 32.06 0.38 -4.32 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.71 6.05 -51.93 -0.31 0.40 16 30 H 0.05 1.32 7.82 -51.93 -0.41 0.91 16 31 H 0.11 2.89 6.24 -51.93 -0.32 2.56 16 32 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.09 0.57 8.05 -51.92 -0.42 0.15 16 35 H 0.08 0.48 6.89 -51.93 -0.36 0.12 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.14 0.85 6.90 -52.49 -0.36 0.48 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -34.83 350.86 -9.18 -44.01 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.06 Total: -1.36 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -4.61 Total: -0.92 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.90 Total: -41.67 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.67 Total: -21.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.83 -9.18 -44.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.427 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds