Wall clock time and date at job start Tue Mar 31 2020 11:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.08997 * 109.47130 * 305.45460 * 3 2 1 5 5 C 1.50701 * 109.46995 * 185.44645 * 3 2 1 6 6 H 1.08001 * 120.00018 * 245.36631 * 5 3 2 7 7 C 1.37880 * 119.99671 * 65.37747 * 5 3 2 8 8 N 1.31510 * 119.99978 * 355.70118 * 7 5 3 9 9 Si 1.86803 * 119.99714 * 175.69925 * 7 5 3 10 10 H 1.48499 * 109.47213 * 94.99598 * 9 7 5 11 11 H 1.48500 * 109.47041 * 214.99576 * 9 7 5 12 12 H 1.48497 * 109.47066 * 334.99465 * 9 7 5 13 13 O 1.45199 * 109.46639 * 65.45015 * 3 2 1 14 14 C 1.34731 * 117.00392 * 269.99503 * 13 3 2 15 15 O 1.21484 * 119.99374 * 0.02562 * 14 13 3 16 16 C 1.47711 * 120.00461 * 179.97438 * 14 13 3 17 17 N 1.34600 * 126.02645 * 359.97438 * 16 14 13 18 18 C 1.30847 * 107.29211 * 180.02562 * 17 16 14 19 19 C 1.50698 * 126.20360 * 179.73482 * 18 17 16 20 20 N 1.34913 * 107.59996 * 359.97438 * 18 17 16 21 21 C 1.40142 * 125.76678 * 179.97438 * 20 18 17 22 22 C 1.38847 * 120.06708 * 221.84502 * 21 20 18 23 23 C 1.38117 * 119.93136 * 179.75371 * 22 21 20 24 24 C 1.38289 * 120.06489 * 0.52552 * 23 22 21 25 25 C 1.38280 * 120.13616 * 359.75064 * 24 23 22 26 26 C 1.38110 * 120.06995 * 359.97438 * 25 24 23 27 27 N 1.28854 * 108.46279 * 0.02562 * 20 18 17 28 28 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47408 * 299.99450 * 1 2 3 30 30 H 1.09002 * 109.47336 * 59.99762 * 1 2 3 31 31 H 1.09005 * 109.46698 * 240.00343 * 2 1 3 32 32 H 1.09000 * 109.47641 * 120.00676 * 2 1 3 33 33 H 0.97005 * 119.99402 * 180.02562 * 8 7 5 34 34 H 1.09011 * 109.47001 * 85.29943 * 19 18 17 35 35 H 1.08990 * 109.47794 * 205.30074 * 19 18 17 36 36 H 1.09006 * 109.46909 * 325.30765 * 19 18 17 37 37 H 1.08003 * 120.03417 * 0.02562 * 22 21 20 38 38 H 1.07995 * 119.97070 * 180.27549 * 23 22 21 39 39 H 1.07995 * 119.92727 * 179.77212 * 24 23 22 40 40 H 1.07995 * 119.96361 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.03797 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 -0.8371 5 6 3.5410 1.4445 -0.1349 6 1 4.1554 1.8080 0.6755 7 6 4.1297 0.9826 -1.2929 8 7 3.3873 0.4621 -2.2456 9 14 5.9817 1.0961 -1.5087 10 1 6.6073 -0.1870 -1.0992 11 1 6.2982 1.3685 -2.9337 12 1 6.5118 2.1968 -0.6646 13 8 1.6650 2.0883 1.2452 14 6 0.4777 2.7244 1.2711 15 8 -0.2254 2.7387 0.2804 16 6 0.0302 3.4035 2.5042 17 7 0.7075 3.4625 3.6658 18 6 -0.0222 4.1494 4.5071 19 6 0.3309 4.4690 5.9368 20 7 -1.1505 4.5152 3.8642 21 6 -2.1994 5.2654 4.4129 22 6 -3.5169 4.9158 4.1489 23 6 -4.5485 5.6540 4.6952 24 6 -4.2701 6.7468 5.4957 25 6 -2.9589 7.1008 5.7558 26 6 -1.9231 6.3632 5.2170 27 7 -1.1011 4.0574 2.6608 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8016 0.1367 -3.0601 34 1 0.9479 5.3672 5.9667 35 1 -0.5822 4.6363 6.5080 36 1 0.8828 3.6347 6.3700 37 1 -3.7349 4.0649 3.5204 38 1 -5.5735 5.3801 4.4939 39 1 -5.0784 7.3247 5.9188 40 1 -2.7447 7.9545 6.3817 41 1 -0.8992 6.6399 5.4208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:46 Heat of formation + Delta-G solvation = 15.154452 kcal Electronic energy + Delta-G solvation = -25486.827025 eV Core-core repulsion = 21754.335587 eV Total energy + Delta-G solvation = -3732.491439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.95142 -41.39474 -40.23890 -37.80090 -35.87273 -35.45635 -34.49318 -33.45396 -32.05446 -31.07739 -29.52656 -29.16007 -26.84639 -25.11438 -24.29431 -23.51784 -22.64758 -21.82414 -21.39961 -19.70949 -18.96872 -18.43733 -18.15883 -17.68983 -17.21161 -17.05782 -16.51703 -15.83963 -15.53009 -15.26279 -14.92560 -14.82624 -14.59383 -14.38903 -14.13697 -13.91006 -13.63772 -13.49143 -13.36387 -13.20520 -13.16357 -12.85418 -12.62045 -12.59668 -12.30345 -12.16874 -11.96052 -11.86693 -11.78394 -11.73669 -11.44368 -10.96774 -10.91212 -10.54931 -10.09067 -9.76834 -8.30589 -6.46775 -0.47560 0.22572 0.25629 0.80060 0.89916 1.40825 1.43438 1.54733 1.68862 1.88579 2.37131 2.59276 2.85579 2.99722 3.30037 3.59658 3.79116 3.84140 4.16221 4.23833 4.30324 4.32105 4.33376 4.38802 4.44653 4.53880 4.59017 4.59822 4.74146 4.93586 4.96801 4.99385 5.02409 5.13958 5.20649 5.26773 5.29089 5.43085 5.45925 5.53202 5.58110 5.78811 5.87582 6.00303 6.47822 6.66047 6.86534 7.23166 8.77743 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002881 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.725479 B = 9716.961445 C =10331.725316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.222 3.778 4 H 0.014 0.986 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.267 1.267 13 O -0.339 6.339 14 C 0.553 3.447 15 O -0.516 6.516 16 C 0.147 3.853 17 N -0.486 5.486 18 C 0.226 3.774 19 C -0.071 4.071 20 N -0.246 5.246 21 C 0.081 3.919 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.094 4.094 25 C -0.093 4.093 26 C -0.106 4.106 27 N -0.263 5.263 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.272 0.728 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 14.170 22.597 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.170 3.830 4 H 0.032 0.968 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.807 3.193 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.192 1.192 13 O -0.253 6.253 14 C 0.395 3.605 15 O -0.403 6.403 16 C -0.129 4.129 17 N -0.213 5.213 18 C -0.047 4.047 19 C -0.130 4.130 20 N -0.037 5.037 21 C -0.008 4.008 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.126 4.126 27 N -0.104 5.104 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.173 0.827 39 H 0.186 0.814 40 H 0.192 0.808 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.905 13.902 21.559 29.669 hybrid contribution 0.722 -0.438 -1.043 1.342 sum -14.184 13.464 20.516 28.344 Atomic orbital electron populations 1.21731 0.96445 1.00906 0.99799 1.21855 0.94310 0.97665 1.02405 1.20664 0.95232 0.89520 0.77624 0.96775 1.21253 0.89923 1.44924 1.02718 0.91711 1.25830 1.04434 0.93532 0.94314 1.70034 1.37774 1.39448 1.07763 0.85158 0.77345 0.79104 0.77730 1.18992 1.19969 1.19164 1.86614 1.33269 1.62237 1.43164 1.19135 0.80729 0.76109 0.84576 1.90800 1.55520 1.58848 1.35123 1.22223 0.91516 1.04946 0.94249 1.71396 1.29945 1.19829 1.00106 1.26199 0.83401 0.95101 1.00028 1.20825 1.05121 1.05967 0.81041 1.44818 1.16237 1.36428 1.06171 1.18071 0.85132 0.95576 1.02007 1.21200 0.91087 1.01050 1.00191 1.21422 0.99295 0.95074 0.96480 1.21866 0.98215 0.95533 0.95582 1.21533 0.91276 0.99569 0.98761 1.21393 1.02795 0.91596 0.96822 1.74362 1.20521 1.13724 1.01776 0.91350 0.95539 0.94160 0.89301 0.93261 0.91828 0.86016 0.86875 0.87337 0.86903 0.82655 0.81430 0.80763 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.57 71.98 0.62 -5.69 16 2 C -0.12 -6.68 5.52 30.59 0.17 -6.51 16 3 C 0.22 13.11 2.19 29.85 0.07 13.17 16 4 H 0.01 0.94 7.16 -2.39 -0.02 0.92 16 5 C -0.55 -33.13 8.83 25.60 0.23 -32.90 16 6 H 0.06 3.87 7.82 -2.91 -0.02 3.85 16 7 C 0.02 1.09 5.34 84.66 0.45 1.54 16 8 N -0.91 -53.85 11.53 21.45 0.25 -53.60 16 9 Si 0.98 44.53 29.54 68.60 2.03 46.55 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 O -0.34 -18.93 9.82 -56.41 -0.55 -19.49 16 14 C 0.55 28.88 6.44 70.33 0.45 29.34 16 15 O -0.52 -28.56 14.27 19.89 0.28 -28.27 16 16 C 0.15 6.59 7.99 137.03 1.09 7.68 16 17 N -0.49 -19.13 11.42 -180.78 -2.06 -21.19 16 18 C 0.23 6.35 7.78 138.07 1.07 7.42 16 19 C -0.07 -0.95 8.92 71.24 0.64 -0.32 16 20 N -0.25 -7.32 3.44 -179.20 -0.62 -7.93 16 21 C 0.08 1.69 6.02 38.11 0.23 1.92 16 22 C -0.12 -2.24 9.78 22.39 0.22 -2.03 16 23 C -0.10 -1.16 10.04 22.25 0.22 -0.93 16 24 C -0.09 -0.57 10.04 22.29 0.22 -0.34 16 25 C -0.09 -0.56 10.04 22.25 0.22 -0.33 16 26 C -0.11 -1.28 8.28 22.39 0.19 -1.09 16 27 N -0.26 -10.49 11.86 -52.48 -0.62 -11.11 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.03 1.26 6.05 -2.39 -0.01 1.24 16 30 H 0.04 2.01 7.82 -2.39 -0.02 1.99 16 31 H 0.09 5.07 6.24 -2.38 -0.01 5.05 16 32 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 34 H 0.12 1.02 8.05 -2.38 -0.02 1.00 16 35 H 0.11 0.87 6.89 -2.39 -0.02 0.86 16 36 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.17 -0.10 8.06 -2.91 -0.02 -0.13 16 40 H 0.17 -0.18 8.06 -2.91 -0.02 -0.20 16 41 H 0.15 1.28 6.90 -2.91 -0.02 1.26 16 Total: -1.00 -82.79 350.86 5.85 -76.94 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.05 Total: 7.17 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.09 Total: 10.93 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.06 Total: -93.84 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.27 Total: -47.76 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -82.79 5.85 -76.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.096 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds