Wall clock time and date at job start Tue Mar 31 2020 11:58:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52994 * 109.47484 * 2 1
4 4 H 1.08997 * 109.47089 * 305.00206 * 3 2 1
5 5 C 1.50699 * 109.47321 * 184.99718 * 3 2 1
6 6 H 1.08001 * 120.00196 * 239.99827 * 5 3 2
7 7 C 1.37878 * 119.99655 * 60.00327 * 5 3 2
8 8 N 1.31518 * 120.00378 * 359.97438 * 7 5 3
9 9 Si 1.86802 * 119.99911 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47173 * 89.99754 * 9 7 5
11 11 H 1.48495 * 109.47028 * 209.99571 * 9 7 5
12 12 H 1.48504 * 109.46989 * 329.99837 * 9 7 5
13 13 O 1.45202 * 109.47118 * 64.99584 * 3 2 1
14 14 C 1.34773 * 117.00282 * 270.00313 * 13 3 2
15 15 O 1.21530 * 119.99835 * 359.97438 * 14 13 3
16 16 C 1.47167 * 119.99957 * 180.02562 * 14 13 3
17 17 C 1.38004 * 126.81629 * 0.25670 * 16 14 13
18 18 N 1.34156 * 107.88182 * 180.13829 * 17 16 14
19 19 C 1.46506 * 125.15765 * 179.90374 * 18 17 16
20 20 N 1.39768 * 109.69013 * 359.63682 * 18 17 16
21 21 C 1.31368 * 109.08827 * 0.22857 * 20 18 17
22 22 C 1.48257 * 126.51535 * 179.97438 * 21 20 18
23 23 C 1.39815 * 120.91011 * 144.74294 * 22 21 20
24 24 C 1.37966 * 119.01361 * 179.71178 * 23 22 21
25 25 N 1.31931 * 120.88537 * 0.57463 * 24 23 22
26 26 C 1.31924 * 122.01695 * 359.72625 * 25 24 23
27 27 C 1.37961 * 120.88768 * 359.96517 * 26 25 24
28 28 H 1.09001 * 109.46946 * 299.99955 * 1 2 3
29 29 H 1.09005 * 109.46617 * 59.99976 * 1 2 3
30 30 H 1.09000 * 109.47374 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46698 * 239.99553 * 2 1 3
32 32 H 1.09005 * 109.46617 * 120.00024 * 2 1 3
33 33 H 0.96990 * 120.00214 * 180.02562 * 8 7 5
34 34 H 1.08007 * 126.06205 * 0.03540 * 17 16 14
35 35 H 1.08999 * 109.46871 * 269.71868 * 19 18 17
36 36 H 1.08994 * 109.46947 * 29.71576 * 19 18 17
37 37 H 1.08997 * 109.47271 * 149.72092 * 19 18 17
38 38 H 1.07997 * 120.49301 * 359.97438 * 23 22 21
39 39 H 1.08006 * 119.55736 * 180.27793 * 24 23 22
40 40 H 1.08002 * 119.55652 * 179.97438 * 26 25 24
41 41 H 1.07998 * 120.49645 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 3.5420 1.4442 -0.1238
6 1 4.1473 1.8887 0.6524
7 6 4.1433 0.8783 -1.2279
8 7 3.4063 0.3365 -2.1729
9 14 6.0050 0.8798 -1.3811
10 1 6.5538 -0.3523 -0.7597
11 1 6.3836 0.9211 -2.8164
12 1 6.5577 2.0717 -0.6888
13 8 1.6559 2.0916 1.2407
14 6 0.4680 2.7280 1.2560
15 8 -0.2276 2.7404 0.2595
16 6 0.0136 3.4088 2.4790
17 6 0.6881 3.4883 3.6804
18 7 -0.0714 4.1922 4.5334
19 6 0.2840 4.5029 5.9203
20 7 -1.2504 4.5895 3.8965
21 6 -1.2433 4.1419 2.6614
22 6 -2.3046 4.3397 1.6453
23 6 -1.9838 4.5065 0.2947
24 6 -3.0030 4.6818 -0.6185
25 7 -4.2637 4.7044 -0.2303
26 6 -4.6088 4.5569 1.0344
27 6 -3.6535 4.3704 2.0122
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8901
33 1 3.8293 -0.0619 -2.9494
34 1 1.6551 3.0585 3.8963
35 1 -0.0871 3.7149 6.5756
36 1 1.3681 4.5704 6.0111
37 1 -0.1646 5.4543 6.2060
38 1 -0.9537 4.4940 -0.0294
39 1 -2.7653 4.8069 -1.6646
40 1 -5.6533 4.5824 1.3081
41 1 -3.9432 4.2500 3.0456
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787092560.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:58:52
Heat of formation + Delta-G solvation = 7.816003 kcal
Electronic energy + Delta-G solvation = -26111.671846 eV
Core-core repulsion = 22378.862189 eV
Total energy + Delta-G solvation = -3732.809658 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.39052 -40.84284 -40.78067 -37.47952 -35.45201 -35.17284 -33.37442 -32.78363
-32.23260 -31.61878 -29.27058 -27.97727 -25.71365 -24.91507 -24.42225 -23.71808
-22.17697 -21.34438 -20.90590 -19.15319 -18.31455 -18.23967 -17.30795 -17.29009
-16.99748 -16.73686 -16.54495 -16.33091 -15.96960 -15.12216 -14.89294 -14.76031
-14.74590 -14.43145 -13.98339 -13.94549 -13.58699 -13.49568 -13.30652 -13.19356
-13.08355 -12.81158 -12.60972 -12.49049 -12.18881 -12.06461 -11.71367 -11.50765
-11.31611 -11.14045 -10.76960 -10.52416 -10.43734 -10.25440 -10.02118 -9.67508
-8.22917 -6.39183 -0.24142 0.23895 0.35282 1.09047 1.26893 1.44614
1.45934 1.56961 2.11524 2.21168 2.46861 2.87903 3.05714 3.07669
3.39454 3.57627 3.89928 4.00611 4.11756 4.19355 4.25414 4.36219
4.41832 4.43265 4.45301 4.48342 4.63243 4.67618 4.72379 4.78240
4.90413 4.93134 5.11982 5.14874 5.26456 5.34413 5.44362 5.56487
5.72204 5.72866 5.75598 6.03999 6.19911 6.28117 6.66856 6.98840
7.12417 7.33617 8.83719
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013337 B = 0.004204 C = 0.003462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2098.978383 B = 6659.321912 C = 8085.489976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.128 4.128
3 C 0.231 3.769
4 H 0.009 0.991
5 C -0.546 4.546
6 H 0.068 0.932
7 C 0.019 3.981
8 N -0.915 5.915
9 Si 0.978 3.022
10 H -0.268 1.268
11 H -0.281 1.281
12 H -0.265 1.265
13 O -0.359 6.359
14 C 0.525 3.475
15 O -0.534 6.534
16 C -0.300 4.300
17 C 0.151 3.849
18 N -0.352 5.352
19 C 0.083 3.917
20 N -0.286 5.286
21 C 0.153 3.847
22 C 0.002 3.998
23 C -0.121 4.121
24 C 0.084 3.916
25 N -0.496 5.496
26 C 0.088 3.912
27 C -0.140 4.140
28 H 0.033 0.967
29 H 0.035 0.965
30 H 0.055 0.945
31 H 0.085 0.915
32 H 0.045 0.955
33 H 0.269 0.731
34 H 0.226 0.774
35 H 0.100 0.900
36 H 0.124 0.876
37 H 0.102 0.898
38 H 0.133 0.867
39 H 0.169 0.831
40 H 0.193 0.807
41 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.954 7.706 16.084 19.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.166 4.166
3 C 0.177 3.823
4 H 0.027 0.973
5 C -0.584 4.584
6 H 0.086 0.914
7 C -0.181 4.181
8 N -0.552 5.552
9 Si 0.801 3.199
10 H -0.193 1.193
11 H -0.207 1.207
12 H -0.189 1.189
13 O -0.275 6.275
14 C 0.371 3.629
15 O -0.427 6.427
16 C -0.313 4.313
17 C 0.000 4.000
18 N -0.131 5.131
19 C -0.055 4.055
20 N -0.107 5.107
21 C -0.015 4.015
22 C -0.008 4.008
23 C -0.142 4.142
24 C -0.072 4.072
25 N -0.205 5.205
26 C -0.069 4.069
27 C -0.161 4.161
28 H 0.052 0.948
29 H 0.055 0.945
30 H 0.074 0.926
31 H 0.103 0.897
32 H 0.063 0.937
33 H 0.078 0.922
34 H 0.243 0.757
35 H 0.119 0.881
36 H 0.143 0.857
37 H 0.121 0.879
38 H 0.150 0.850
39 H 0.186 0.814
40 H 0.210 0.790
41 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -9.342 8.418 16.074 20.409
hybrid contribution 2.050 -0.852 -0.651 2.313
sum -7.293 7.566 15.424 18.663
Atomic orbital electron populations
1.21675 0.96568 1.00138 0.99991 1.21856 0.94119 0.98417 1.02193
1.20308 0.94336 0.88979 0.78628 0.97349 1.21328 0.90500 1.39727
1.06809 0.91388 1.25757 1.03917 0.94017 0.94438 1.70017 1.37322
1.38009 1.09901 0.85256 0.78094 0.79067 0.77440 1.19328 1.20652
1.18919 1.86482 1.35187 1.63317 1.42546 1.20278 0.79664 0.75788
0.87132 1.90736 1.55662 1.59888 1.36379 1.20512 0.99323 1.16364
0.95080 1.23583 0.97588 0.91037 0.87742 1.48639 1.12515 1.38965
1.12967 1.22566 1.04522 1.04639 0.73753 1.77254 1.04538 1.22883
1.06020 1.21686 0.92671 0.95387 0.91732 1.18211 0.91823 0.99509
0.91271 1.22491 1.02245 0.96733 0.92732 1.22857 0.87381 0.96200
1.00720 1.67657 1.20492 1.12356 1.20019 1.23191 1.01312 0.95178
0.87174 1.22383 0.91304 0.99906 1.02518 0.94785 0.94549 0.92560
0.89662 0.93655 0.92176 0.75719 0.88145 0.85730 0.87897 0.84950
0.81381 0.79008 0.82646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.68 8.56 71.98 0.62 -5.06 16
2 C -0.13 -6.41 5.49 30.59 0.17 -6.24 16
3 C 0.23 12.32 2.25 29.85 0.07 12.39 16
4 H 0.01 0.52 7.16 -2.39 -0.02 0.51 16
5 C -0.55 -30.17 8.90 25.60 0.23 -29.94 16
6 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16
7 C 0.02 1.00 5.29 84.65 0.45 1.45 16
8 N -0.91 -51.81 11.29 21.45 0.24 -51.56 16
9 Si 0.98 42.04 29.54 68.60 2.03 44.07 16
10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16
11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16
13 O -0.36 -16.78 9.65 -56.84 -0.55 -17.33 16
14 C 0.52 22.46 6.31 70.17 0.44 22.90 16
15 O -0.53 -24.88 9.67 19.74 0.19 -24.69 16
16 C -0.30 -10.25 6.28 -18.79 -0.12 -10.37 16
17 C 0.15 3.71 11.28 84.28 0.95 4.66 16
18 N -0.35 -7.32 3.95 -367.89 -1.45 -8.78 16
19 C 0.08 0.70 11.40 127.77 1.46 2.16 16
20 N -0.29 -7.81 12.49 -44.52 -0.56 -8.37 16
21 C 0.15 4.91 6.98 44.08 0.31 5.22 16
22 C 0.00 0.06 5.75 -19.85 -0.11 -0.05 16
23 C -0.12 -4.16 7.90 22.59 0.18 -3.98 16
24 C 0.08 2.62 11.17 84.61 0.95 3.57 16
25 N -0.50 -14.61 10.35 -196.14 -2.03 -16.64 16
26 C 0.09 2.14 11.17 84.61 0.95 3.09 16
27 C -0.14 -3.62 9.88 22.59 0.22 -3.40 16
28 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16
29 H 0.04 1.73 7.79 -2.38 -0.02 1.71 16
30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
31 H 0.09 4.68 5.95 -2.39 -0.01 4.67 16
32 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16
33 H 0.27 14.32 8.31 -92.72 -0.77 13.55 16
34 H 0.23 4.05 8.06 -2.91 -0.02 4.03 16
35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16
36 H 0.12 0.37 8.13 -2.39 -0.02 0.35 16
37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.13 5.16 5.77 -2.91 -0.02 5.14 16
39 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16
40 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16
41 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16
Total: -1.00 -72.90 348.65 5.67 -67.23
By element:
Atomic # 1 Polarization: 18.63 SS G_CDS: 1.06 Total: 19.68 kcal
Atomic # 6 Polarization: -10.35 SS G_CDS: 6.74 Total: -3.61 kcal
Atomic # 7 Polarization: -81.55 SS G_CDS: -3.80 Total: -85.35 kcal
Atomic # 8 Polarization: -41.66 SS G_CDS: -0.36 Total: -42.02 kcal
Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal
Total: -72.90 5.67 -67.23 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787092560.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal
(2) G-P(sol) polarization free energy of solvation -72.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds