Wall clock time and date at job start Tue Mar 31 2020 11:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47484 * 2 1 4 4 H 1.08997 * 109.47089 * 305.00206 * 3 2 1 5 5 C 1.50699 * 109.47321 * 184.99718 * 3 2 1 6 6 H 1.08001 * 120.00196 * 239.99827 * 5 3 2 7 7 C 1.37878 * 119.99655 * 60.00327 * 5 3 2 8 8 N 1.31518 * 120.00378 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99911 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47173 * 89.99754 * 9 7 5 11 11 H 1.48495 * 109.47028 * 209.99571 * 9 7 5 12 12 H 1.48504 * 109.46989 * 329.99837 * 9 7 5 13 13 O 1.45202 * 109.47118 * 64.99584 * 3 2 1 14 14 C 1.34773 * 117.00282 * 270.00313 * 13 3 2 15 15 O 1.21530 * 119.99835 * 359.97438 * 14 13 3 16 16 C 1.47167 * 119.99957 * 180.02562 * 14 13 3 17 17 C 1.38004 * 126.81629 * 0.25670 * 16 14 13 18 18 N 1.34156 * 107.88182 * 180.13829 * 17 16 14 19 19 C 1.46506 * 125.15765 * 179.90374 * 18 17 16 20 20 N 1.39768 * 109.69013 * 359.63682 * 18 17 16 21 21 C 1.31368 * 109.08827 * 0.22857 * 20 18 17 22 22 C 1.48257 * 126.51535 * 179.97438 * 21 20 18 23 23 C 1.39815 * 120.91011 * 144.74294 * 22 21 20 24 24 C 1.37966 * 119.01361 * 179.71178 * 23 22 21 25 25 N 1.31931 * 120.88537 * 0.57463 * 24 23 22 26 26 C 1.31924 * 122.01695 * 359.72625 * 25 24 23 27 27 C 1.37961 * 120.88768 * 359.96517 * 26 25 24 28 28 H 1.09001 * 109.46946 * 299.99955 * 1 2 3 29 29 H 1.09005 * 109.46617 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46698 * 239.99553 * 2 1 3 32 32 H 1.09005 * 109.46617 * 120.00024 * 2 1 3 33 33 H 0.96990 * 120.00214 * 180.02562 * 8 7 5 34 34 H 1.08007 * 126.06205 * 0.03540 * 17 16 14 35 35 H 1.08999 * 109.46871 * 269.71868 * 19 18 17 36 36 H 1.08994 * 109.46947 * 29.71576 * 19 18 17 37 37 H 1.08997 * 109.47271 * 149.72092 * 19 18 17 38 38 H 1.07997 * 120.49301 * 359.97438 * 23 22 21 39 39 H 1.08006 * 119.55736 * 180.27793 * 24 23 22 40 40 H 1.08002 * 119.55652 * 179.97438 * 26 25 24 41 41 H 1.07998 * 120.49645 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1729 9 14 6.0050 0.8798 -1.3811 10 1 6.5538 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5577 2.0717 -0.6888 13 8 1.6559 2.0916 1.2407 14 6 0.4680 2.7280 1.2560 15 8 -0.2276 2.7404 0.2595 16 6 0.0136 3.4088 2.4790 17 6 0.6881 3.4883 3.6804 18 7 -0.0714 4.1922 4.5334 19 6 0.2840 4.5029 5.9203 20 7 -1.2504 4.5895 3.8965 21 6 -1.2433 4.1419 2.6614 22 6 -2.3046 4.3397 1.6453 23 6 -1.9838 4.5065 0.2947 24 6 -3.0030 4.6818 -0.6185 25 7 -4.2637 4.7044 -0.2303 26 6 -4.6088 4.5569 1.0344 27 6 -3.6535 4.3704 2.0122 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 3.8293 -0.0619 -2.9494 34 1 1.6551 3.0585 3.8963 35 1 -0.0871 3.7149 6.5756 36 1 1.3681 4.5704 6.0111 37 1 -0.1646 5.4543 6.2060 38 1 -0.9537 4.4940 -0.0294 39 1 -2.7653 4.8069 -1.6646 40 1 -5.6533 4.5824 1.3081 41 1 -3.9432 4.2500 3.0456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:52 Heat of formation + Delta-G solvation = 7.816003 kcal Electronic energy + Delta-G solvation = -26111.671846 eV Core-core repulsion = 22378.862189 eV Total energy + Delta-G solvation = -3732.809658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39052 -40.84284 -40.78067 -37.47952 -35.45201 -35.17284 -33.37442 -32.78363 -32.23260 -31.61878 -29.27058 -27.97727 -25.71365 -24.91507 -24.42225 -23.71808 -22.17697 -21.34438 -20.90590 -19.15319 -18.31455 -18.23967 -17.30795 -17.29009 -16.99748 -16.73686 -16.54495 -16.33091 -15.96960 -15.12216 -14.89294 -14.76031 -14.74590 -14.43145 -13.98339 -13.94549 -13.58699 -13.49568 -13.30652 -13.19356 -13.08355 -12.81158 -12.60972 -12.49049 -12.18881 -12.06461 -11.71367 -11.50765 -11.31611 -11.14045 -10.76960 -10.52416 -10.43734 -10.25440 -10.02118 -9.67508 -8.22917 -6.39183 -0.24142 0.23895 0.35282 1.09047 1.26893 1.44614 1.45934 1.56961 2.11524 2.21168 2.46861 2.87903 3.05714 3.07669 3.39454 3.57627 3.89928 4.00611 4.11756 4.19355 4.25414 4.36219 4.41832 4.43265 4.45301 4.48342 4.63243 4.67618 4.72379 4.78240 4.90413 4.93134 5.11982 5.14874 5.26456 5.34413 5.44362 5.56487 5.72204 5.72866 5.75598 6.03999 6.19911 6.28117 6.66856 6.98840 7.12417 7.33617 8.83719 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.004204 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.978383 B = 6659.321912 C = 8085.489976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.231 3.769 4 H 0.009 0.991 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.359 6.359 14 C 0.525 3.475 15 O -0.534 6.534 16 C -0.300 4.300 17 C 0.151 3.849 18 N -0.352 5.352 19 C 0.083 3.917 20 N -0.286 5.286 21 C 0.153 3.847 22 C 0.002 3.998 23 C -0.121 4.121 24 C 0.084 3.916 25 N -0.496 5.496 26 C 0.088 3.912 27 C -0.140 4.140 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 7.706 16.084 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.189 1.189 13 O -0.275 6.275 14 C 0.371 3.629 15 O -0.427 6.427 16 C -0.313 4.313 17 C 0.000 4.000 18 N -0.131 5.131 19 C -0.055 4.055 20 N -0.107 5.107 21 C -0.015 4.015 22 C -0.008 4.008 23 C -0.142 4.142 24 C -0.072 4.072 25 N -0.205 5.205 26 C -0.069 4.069 27 C -0.161 4.161 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.186 0.814 40 H 0.210 0.790 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.342 8.418 16.074 20.409 hybrid contribution 2.050 -0.852 -0.651 2.313 sum -7.293 7.566 15.424 18.663 Atomic orbital electron populations 1.21675 0.96568 1.00138 0.99991 1.21856 0.94119 0.98417 1.02193 1.20308 0.94336 0.88979 0.78628 0.97349 1.21328 0.90500 1.39727 1.06809 0.91388 1.25757 1.03917 0.94017 0.94438 1.70017 1.37322 1.38009 1.09901 0.85256 0.78094 0.79067 0.77440 1.19328 1.20652 1.18919 1.86482 1.35187 1.63317 1.42546 1.20278 0.79664 0.75788 0.87132 1.90736 1.55662 1.59888 1.36379 1.20512 0.99323 1.16364 0.95080 1.23583 0.97588 0.91037 0.87742 1.48639 1.12515 1.38965 1.12967 1.22566 1.04522 1.04639 0.73753 1.77254 1.04538 1.22883 1.06020 1.21686 0.92671 0.95387 0.91732 1.18211 0.91823 0.99509 0.91271 1.22491 1.02245 0.96733 0.92732 1.22857 0.87381 0.96200 1.00720 1.67657 1.20492 1.12356 1.20019 1.23191 1.01312 0.95178 0.87174 1.22383 0.91304 0.99906 1.02518 0.94785 0.94549 0.92560 0.89662 0.93655 0.92176 0.75719 0.88145 0.85730 0.87897 0.84950 0.81381 0.79008 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.56 71.98 0.62 -5.06 16 2 C -0.13 -6.41 5.49 30.59 0.17 -6.24 16 3 C 0.23 12.32 2.25 29.85 0.07 12.39 16 4 H 0.01 0.52 7.16 -2.39 -0.02 0.51 16 5 C -0.55 -30.17 8.90 25.60 0.23 -29.94 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -51.81 11.29 21.45 0.24 -51.56 16 9 Si 0.98 42.04 29.54 68.60 2.03 44.07 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 O -0.36 -16.78 9.65 -56.84 -0.55 -17.33 16 14 C 0.52 22.46 6.31 70.17 0.44 22.90 16 15 O -0.53 -24.88 9.67 19.74 0.19 -24.69 16 16 C -0.30 -10.25 6.28 -18.79 -0.12 -10.37 16 17 C 0.15 3.71 11.28 84.28 0.95 4.66 16 18 N -0.35 -7.32 3.95 -367.89 -1.45 -8.78 16 19 C 0.08 0.70 11.40 127.77 1.46 2.16 16 20 N -0.29 -7.81 12.49 -44.52 -0.56 -8.37 16 21 C 0.15 4.91 6.98 44.08 0.31 5.22 16 22 C 0.00 0.06 5.75 -19.85 -0.11 -0.05 16 23 C -0.12 -4.16 7.90 22.59 0.18 -3.98 16 24 C 0.08 2.62 11.17 84.61 0.95 3.57 16 25 N -0.50 -14.61 10.35 -196.14 -2.03 -16.64 16 26 C 0.09 2.14 11.17 84.61 0.95 3.09 16 27 C -0.14 -3.62 9.88 22.59 0.22 -3.40 16 28 H 0.03 1.49 6.06 -2.39 -0.01 1.48 16 29 H 0.04 1.73 7.79 -2.38 -0.02 1.71 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 4.68 5.95 -2.39 -0.01 4.67 16 32 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.27 14.32 8.31 -92.72 -0.77 13.55 16 34 H 0.23 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.12 0.37 8.13 -2.39 -0.02 0.35 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.13 5.16 5.77 -2.91 -0.02 5.14 16 39 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.90 348.65 5.67 -67.23 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.06 Total: 19.68 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.74 Total: -3.61 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.80 Total: -85.35 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.36 Total: -42.02 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.90 5.67 -67.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds