Wall clock time and date at job start Tue Mar 31 2020 11:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 H 1.09004 * 109.47285 * 305.00121 * 3 2 1 5 5 C 1.50699 * 109.47194 * 184.99993 * 3 2 1 6 6 H 1.08003 * 120.00557 * 239.99965 * 5 3 2 7 7 C 1.37881 * 120.00193 * 60.00073 * 5 3 2 8 8 N 1.31517 * 119.99781 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00244 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46954 * 89.99610 * 9 7 5 11 11 H 1.48502 * 109.47021 * 209.99928 * 9 7 5 12 12 H 1.48502 * 109.46825 * 329.99712 * 9 7 5 13 13 O 1.45200 * 109.47308 * 64.99894 * 3 2 1 14 14 C 1.34711 * 117.00025 * 270.00400 * 13 3 2 15 15 O 1.21469 * 120.00076 * 359.97438 * 14 13 3 16 16 C 1.47730 * 119.99681 * 179.97438 * 14 13 3 17 17 C 1.39623 * 120.14610 * 179.97438 * 16 14 13 18 18 C 1.37950 * 119.84837 * 180.02562 * 17 16 14 19 19 C 1.38368 * 120.14629 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.84489 * 179.97438 * 19 18 17 21 21 N 1.46497 * 109.46923 * 90.00065 * 20 19 18 22 22 C 1.34433 * 126.81976 * 124.99393 * 21 20 19 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.38365 * 120.30494 * 0.27411 * 19 18 17 27 27 C 1.37949 * 120.14870 * 359.44448 * 26 19 18 28 28 H 1.08999 * 109.47307 * 59.99851 * 1 2 3 29 29 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46956 * 299.99708 * 1 2 3 31 31 H 1.08997 * 109.47440 * 240.00314 * 2 1 3 32 32 H 1.08999 * 109.47307 * 120.00149 * 2 1 3 33 33 H 0.96995 * 120.00010 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.07991 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.92291 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.47201 * 330.00471 * 20 19 18 37 37 H 1.09001 * 109.47004 * 210.00411 * 20 19 18 38 38 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 39 39 H 1.08000 * 125.52705 * 180.02562 * 24 23 22 40 40 H 1.07997 * 119.92487 * 179.72833 * 26 19 18 41 41 H 1.08002 * 120.07680 * 180.27078 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6889 13 8 1.6558 2.0917 1.2407 14 6 0.4684 2.7277 1.2560 15 8 -0.2269 2.7400 0.2600 16 6 0.0119 3.4102 2.4841 17 6 -1.2181 4.0708 2.5033 18 6 -1.6381 4.7065 3.6532 19 6 -0.8433 4.6909 4.7858 20 6 -1.3086 5.3881 6.0382 21 7 -2.0772 4.4515 6.8616 22 6 -1.8475 4.1332 8.1474 23 7 -2.7558 3.2685 8.5200 24 6 -3.5753 3.0069 7.5025 25 7 -3.1985 3.7052 6.4638 26 6 0.3794 4.0435 4.7718 27 6 0.8090 3.3988 3.6303 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8293 -0.0618 -2.9495 34 1 -1.8392 4.0840 1.6198 35 1 -2.5891 5.2182 3.6693 36 1 -1.9380 6.2364 5.7693 37 1 -0.4439 5.7410 6.6002 38 1 -1.0547 4.5267 8.7663 39 1 -4.4152 2.3286 7.5316 40 1 0.9968 4.0389 5.6579 41 1 1.7617 2.8901 3.6221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787092770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:34 Heat of formation + Delta-G solvation = 25.903832 kcal Electronic energy + Delta-G solvation = -25160.122713 eV Core-core repulsion = 21428.097403 eV Total energy + Delta-G solvation = -3732.025311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29593 -40.06838 -38.81044 -35.86079 -34.83691 -33.53894 -31.62566 -31.46564 -31.15851 -31.08115 -27.68464 -26.96796 -23.84910 -23.01518 -22.81635 -22.14369 -21.81054 -20.63802 -19.56923 -17.79092 -17.55821 -16.72105 -16.51553 -15.85684 -15.59335 -15.30520 -15.06906 -14.92379 -14.63252 -14.33470 -14.08965 -13.61549 -13.18928 -13.15330 -12.85429 -12.70477 -12.41180 -12.00993 -11.78760 -11.51403 -11.37699 -11.20947 -11.12447 -10.99842 -10.66891 -10.31760 -10.30868 -10.06532 -9.99031 -9.84801 -9.70321 -9.40596 -9.08415 -9.01093 -8.84421 -8.48285 -6.21443 -4.28810 0.60122 1.28857 1.38798 2.07815 2.73231 3.01288 3.22238 3.27544 3.30821 3.56363 3.87210 4.00153 4.06536 4.27756 4.31703 4.61558 4.70650 4.77178 4.93569 5.00153 5.10445 5.29916 5.33407 5.53667 5.70681 5.89721 5.94529 6.17125 6.17635 6.21983 6.25739 6.28307 6.39455 6.46719 6.48895 6.73373 6.84829 6.94183 7.14216 7.20426 7.58007 7.70306 7.82068 7.89672 8.11844 8.57089 8.83850 9.36347 10.85382 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.002682 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.295186 B =10439.377515 C =10752.060949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.493 3.507 15 O -0.510 6.510 16 C -0.096 4.096 17 C -0.064 4.064 18 C -0.096 4.096 19 C -0.097 4.097 20 C 0.171 3.829 21 N -0.375 5.375 22 C 0.252 3.748 23 N -0.549 5.549 24 C 0.194 3.806 25 N -0.308 5.308 26 C -0.114 4.114 27 C -0.066 4.066 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.128 0.872 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 9.986 17.999 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.337 3.663 15 O -0.401 6.401 16 C -0.098 4.098 17 C -0.082 4.082 18 C -0.115 4.115 19 C -0.098 4.098 20 C 0.050 3.950 21 N -0.166 5.166 22 C -0.045 4.045 23 N -0.276 5.276 24 C -0.108 4.108 25 N -0.135 5.135 26 C -0.132 4.132 27 C -0.085 4.085 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.234 0.766 39 H 0.232 0.768 40 H 0.146 0.854 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.458 9.762 17.078 21.827 hybrid contribution 1.092 -0.059 -0.256 1.124 sum -8.365 9.703 16.822 21.144 Atomic orbital electron populations 1.21863 0.98363 0.99091 1.00740 1.22026 0.92651 0.99282 1.03411 1.20725 0.95070 0.88774 0.78451 0.93418 1.21023 0.89554 1.39106 1.06293 0.91323 1.24890 0.99273 0.94744 0.95035 1.69888 1.35414 1.37690 1.09501 0.86277 0.83833 0.78674 0.77379 1.20336 1.20948 1.19629 1.86522 1.33470 1.62309 1.44289 1.20948 0.81164 0.76987 0.87232 1.90777 1.55525 1.58571 1.35181 1.19588 0.96119 1.00783 0.93286 1.21306 0.94383 0.93936 0.98610 1.20903 0.99205 0.99477 0.91916 1.19860 0.95337 1.00110 0.94492 1.20734 0.95192 0.89340 0.89748 1.50655 1.22561 1.33427 1.09961 1.26094 0.99030 0.94434 0.84942 1.70535 1.07230 1.18188 1.31627 1.26028 0.99782 0.99062 0.85978 1.78113 1.01072 1.10907 1.23439 1.20978 0.95793 0.97976 0.98479 1.21563 0.99705 0.95903 0.91283 0.92776 0.94740 0.95010 0.87253 0.93951 0.92337 0.84289 0.85195 0.88211 0.86911 0.76562 0.76813 0.85428 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.87 2.25 -27.88 -0.06 5.81 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.43 8.90 -34.44 -0.31 -14.74 16 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 O -0.35 -8.24 9.06 -40.52 -0.37 -8.61 16 14 C 0.49 10.46 6.35 34.61 0.22 10.68 16 15 O -0.51 -11.89 13.53 -19.24 -0.26 -12.15 16 16 C -0.10 -1.59 5.87 -104.98 -0.62 -2.21 16 17 C -0.06 -0.91 9.60 -39.17 -0.38 -1.28 16 18 C -0.10 -1.07 9.68 -39.64 -0.38 -1.46 16 19 C -0.10 -0.94 5.35 -104.53 -0.56 -1.50 16 20 C 0.17 1.07 6.67 -5.19 -0.03 1.03 16 21 N -0.37 -3.26 3.68 -63.81 -0.24 -3.50 16 22 C 0.25 1.93 12.63 -90.65 -1.14 0.78 16 23 N -0.55 -5.70 11.19 -15.83 -0.18 -5.87 16 24 C 0.19 1.98 13.03 -91.81 -1.20 0.79 16 25 N -0.31 -3.49 12.56 29.29 0.37 -3.12 16 26 C -0.11 -1.20 9.68 -39.64 -0.38 -1.58 16 27 C -0.07 -0.93 9.62 -39.17 -0.38 -1.31 16 28 H 0.05 1.26 7.79 -51.93 -0.40 0.85 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 31 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.14 1.96 7.65 -52.48 -0.40 1.56 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.11 0.31 8.03 -51.93 -0.42 -0.11 16 38 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.22 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.14 2.04 7.61 -52.49 -0.40 1.64 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -34.02 354.09 -9.99 -44.01 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.12 Total: 2.14 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -5.14 Total: -9.77 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.58 Total: -36.76 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.63 Total: -20.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.02 -9.99 -44.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.914 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds