Wall clock time and date at job start Tue Mar 31 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 H 1.09004 * 109.47285 * 305.00121 * 3 2 1 5 5 C 1.50699 * 109.47194 * 184.99993 * 3 2 1 6 6 H 1.08003 * 120.00557 * 239.99965 * 5 3 2 7 7 C 1.37881 * 120.00193 * 60.00073 * 5 3 2 8 8 N 1.31517 * 119.99781 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00244 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46954 * 89.99610 * 9 7 5 11 11 H 1.48502 * 109.47021 * 209.99928 * 9 7 5 12 12 H 1.48502 * 109.46825 * 329.99712 * 9 7 5 13 13 O 1.45200 * 109.47308 * 64.99894 * 3 2 1 14 14 C 1.34711 * 117.00025 * 270.00400 * 13 3 2 15 15 O 1.21469 * 120.00076 * 359.97438 * 14 13 3 16 16 C 1.47730 * 119.99681 * 179.97438 * 14 13 3 17 17 C 1.39623 * 120.14610 * 179.97438 * 16 14 13 18 18 C 1.37950 * 119.84837 * 180.02562 * 17 16 14 19 19 C 1.38368 * 120.14629 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.84489 * 179.97438 * 19 18 17 21 21 N 1.46497 * 109.46923 * 90.00065 * 20 19 18 22 22 C 1.34433 * 126.81976 * 124.99393 * 21 20 19 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.38365 * 120.30494 * 0.27411 * 19 18 17 27 27 C 1.37949 * 120.14870 * 359.44448 * 26 19 18 28 28 H 1.08999 * 109.47307 * 59.99851 * 1 2 3 29 29 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46956 * 299.99708 * 1 2 3 31 31 H 1.08997 * 109.47440 * 240.00314 * 2 1 3 32 32 H 1.08999 * 109.47307 * 120.00149 * 2 1 3 33 33 H 0.96995 * 120.00010 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.07991 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.92291 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.47201 * 330.00471 * 20 19 18 37 37 H 1.09001 * 109.47004 * 210.00411 * 20 19 18 38 38 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 39 39 H 1.08000 * 125.52705 * 180.02562 * 24 23 22 40 40 H 1.07997 * 119.92487 * 179.72833 * 26 19 18 41 41 H 1.08002 * 120.07680 * 180.27078 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6889 13 8 1.6558 2.0917 1.2407 14 6 0.4684 2.7277 1.2560 15 8 -0.2269 2.7400 0.2600 16 6 0.0119 3.4102 2.4841 17 6 -1.2181 4.0708 2.5033 18 6 -1.6381 4.7065 3.6532 19 6 -0.8433 4.6909 4.7858 20 6 -1.3086 5.3881 6.0382 21 7 -2.0772 4.4515 6.8616 22 6 -1.8475 4.1332 8.1474 23 7 -2.7558 3.2685 8.5200 24 6 -3.5753 3.0069 7.5025 25 7 -3.1985 3.7052 6.4638 26 6 0.3794 4.0435 4.7718 27 6 0.8090 3.3988 3.6303 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8293 -0.0618 -2.9495 34 1 -1.8392 4.0840 1.6198 35 1 -2.5891 5.2182 3.6693 36 1 -1.9380 6.2364 5.7693 37 1 -0.4439 5.7410 6.6002 38 1 -1.0547 4.5267 8.7663 39 1 -4.4152 2.3286 7.5316 40 1 0.9968 4.0389 5.6579 41 1 1.7617 2.8901 3.6221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787092770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:33 Heat of formation + Delta-G solvation = 8.212817 kcal Electronic energy + Delta-G solvation = -25160.889853 eV Core-core repulsion = 21428.097403 eV Total energy + Delta-G solvation = -3732.792450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.91540 -41.57873 -40.04109 -37.66474 -35.69667 -35.44982 -33.43895 -32.31449 -32.16528 -31.99573 -29.44719 -28.06516 -25.48878 -24.42937 -23.81229 -22.81277 -22.74703 -22.03110 -21.28133 -19.29886 -18.56542 -18.28528 -17.79226 -17.17845 -17.03532 -16.55539 -16.36504 -15.87525 -15.69888 -15.32957 -14.90087 -14.88219 -14.74118 -14.54918 -14.16149 -13.73661 -13.62308 -13.39341 -13.35634 -13.14684 -13.08790 -12.84735 -12.59261 -12.51073 -12.16904 -12.08495 -11.82616 -11.53383 -11.37665 -10.99319 -10.87859 -10.73901 -10.59987 -10.56121 -10.05921 -10.02966 -8.29831 -6.47201 -0.47777 0.31805 0.78457 1.33714 1.40463 1.42795 1.53720 1.77540 1.93855 2.09036 2.39645 2.74665 2.99835 3.38221 3.61276 3.63261 3.85284 3.91461 3.93028 4.17659 4.25921 4.30234 4.32994 4.33992 4.48352 4.52728 4.59294 4.70041 4.77771 4.95745 5.01282 5.13309 5.15277 5.27184 5.29814 5.36884 5.40453 5.47924 5.52511 5.61580 5.77307 5.91175 5.99983 6.06033 6.56987 6.90831 7.20009 7.23970 8.77290 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.002682 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.295186 B =10439.377515 C =10752.060949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.265 1.265 13 O -0.356 6.356 14 C 0.487 3.513 15 O -0.543 6.543 16 C -0.131 4.131 17 C -0.074 4.074 18 C -0.093 4.093 19 C -0.078 4.078 20 C 0.169 3.831 21 N -0.379 5.379 22 C 0.263 3.737 23 N -0.583 5.583 24 C 0.186 3.814 25 N -0.348 5.348 26 C -0.102 4.102 27 C -0.075 4.075 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.271 0.729 34 H 0.127 0.873 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.162 0.838 38 H 0.265 0.735 39 H 0.230 0.770 40 H 0.169 0.831 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 11.373 21.281 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.189 1.189 13 O -0.272 6.272 14 C 0.334 3.666 15 O -0.436 6.436 16 C -0.132 4.132 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.079 4.079 20 C 0.049 3.951 21 N -0.170 5.170 22 C -0.033 4.033 23 N -0.311 5.311 24 C -0.117 4.117 25 N -0.176 5.176 26 C -0.120 4.120 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.135 0.865 37 H 0.179 0.821 38 H 0.281 0.719 39 H 0.246 0.754 40 H 0.186 0.814 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.615 11.163 20.372 24.776 hybrid contribution 0.733 -0.395 -1.168 1.435 sum -7.882 10.768 19.204 23.385 Atomic orbital electron populations 1.21710 0.96537 1.00587 0.99868 1.21872 0.94233 0.98147 1.02441 1.20422 0.94762 0.89194 0.78383 0.97635 1.21307 0.90214 1.40141 1.07033 0.91442 1.25840 1.04422 0.93800 0.94266 1.70015 1.37547 1.37815 1.09913 0.85178 0.77434 0.79178 0.77608 1.19150 1.20312 1.18877 1.86503 1.35135 1.62932 1.42674 1.21877 0.79863 0.76189 0.88704 1.90741 1.56056 1.59890 1.36896 1.19414 0.98152 1.03452 0.92186 1.21313 0.93546 0.94637 0.99688 1.21170 1.00126 0.98594 0.91265 1.20306 0.94190 0.98006 0.95399 1.21104 0.97073 0.88566 0.88405 1.50726 1.22083 1.33581 1.10622 1.27007 0.98778 0.92735 0.84731 1.70545 1.08434 1.19798 1.32284 1.26426 1.00262 0.99097 0.85887 1.78041 1.02775 1.12221 1.24529 1.21367 0.96337 0.96059 0.98209 1.21612 0.99228 0.96751 0.91773 0.94490 0.91882 0.95013 0.89299 0.93540 0.91972 0.85520 0.83117 0.86501 0.82057 0.71928 0.75418 0.81351 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.56 71.98 0.62 -5.39 16 2 C -0.13 -6.70 5.49 30.59 0.17 -6.54 16 3 C 0.23 12.61 2.25 29.85 0.07 12.68 16 4 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 5 C -0.55 -31.46 8.90 25.60 0.23 -31.24 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.92 -52.84 11.29 21.45 0.24 -52.60 16 9 Si 0.98 42.88 29.54 68.60 2.03 44.90 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 O -0.36 -17.75 9.06 -56.20 -0.51 -18.26 16 14 C 0.49 22.01 6.35 70.33 0.45 22.46 16 15 O -0.54 -27.28 13.53 19.94 0.27 -27.01 16 16 C -0.13 -4.47 5.87 -20.10 -0.12 -4.58 16 17 C -0.07 -2.11 9.60 22.54 0.22 -1.90 16 18 C -0.09 -1.90 9.68 22.23 0.22 -1.68 16 19 C -0.08 -1.22 5.35 -19.80 -0.11 -1.32 16 20 C 0.17 1.20 6.67 85.63 0.57 1.77 16 21 N -0.38 -5.03 3.68 -355.80 -1.31 -6.34 16 22 C 0.26 2.88 12.63 180.36 2.28 5.16 16 23 N -0.58 -10.60 11.19 -204.00 -2.28 -12.88 16 24 C 0.19 3.50 13.03 180.77 2.36 5.86 16 25 N -0.35 -7.10 12.56 -61.25 -0.77 -7.87 16 26 C -0.10 -1.78 9.68 22.23 0.22 -1.57 16 27 C -0.08 -2.06 9.62 22.54 0.22 -1.84 16 28 H 0.04 1.80 7.79 -2.39 -0.02 1.78 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.03 1.43 6.06 -2.39 -0.01 1.42 16 31 H 0.09 5.00 5.95 -2.39 -0.01 4.98 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.13 3.83 7.65 -2.91 -0.02 3.81 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.12 0.54 8.08 -2.39 -0.02 0.52 16 37 H 0.16 -0.33 8.03 -2.39 -0.02 -0.35 16 38 H 0.27 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.23 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.14 3.86 7.61 -2.91 -0.02 3.83 16 Total: -1.00 -79.73 354.09 6.53 -73.20 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.05 Total: 13.64 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 7.82 Total: -6.78 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -4.12 Total: -79.69 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.24 Total: -45.26 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.73 6.53 -73.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787092770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.409 kcal (2) G-P(sol) polarization free energy of solvation -79.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds