Wall clock time and date at job start Tue Mar 31 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.50707 * 109.47055 * 240.00179 * 2 1 3 5 5 H 1.08003 * 119.99883 * 240.00025 * 4 2 1 6 6 C 1.37874 * 120.00014 * 60.00030 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47291 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47001 * 119.99780 * 8 6 4 11 11 H 1.48500 * 109.47379 * 239.99984 * 8 6 4 12 12 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 13 13 O 1.45196 * 109.47253 * 300.00393 * 12 2 1 14 14 C 1.34741 * 117.00245 * 180.02562 * 13 12 2 15 15 O 1.21493 * 119.99807 * 359.97438 * 14 13 12 16 16 C 1.47586 * 119.99955 * 180.27282 * 14 13 12 17 17 C 1.39760 * 120.03212 * 359.44120 * 16 14 13 18 18 C 1.37652 * 119.97277 * 179.78778 * 17 16 14 19 19 C 1.39511 * 120.02387 * 0.49351 * 18 17 16 20 20 C 1.48286 * 119.96602 * 179.71809 * 19 18 17 21 21 N 1.34016 * 125.65433 * 0.02634 * 20 19 18 22 22 C 1.30645 * 109.78493 * 179.97438 * 21 20 19 23 23 N 1.34575 * 108.30372 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.73650 * 180.02562 * 23 22 21 25 25 N 1.31554 * 125.65397 * 179.71219 * 20 19 18 26 26 C 1.39515 * 120.06296 * 359.74197 * 19 18 17 27 27 C 1.37641 * 120.03116 * 0.02562 * 26 19 18 28 28 H 1.08991 * 109.47234 * 299.99785 * 1 2 3 29 29 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 30 30 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47345 * 299.99594 * 3 2 1 33 33 H 1.09000 * 109.47271 * 60.00581 * 3 2 1 34 34 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47242 * 179.97438 * 12 2 1 36 36 H 1.09010 * 109.47036 * 60.00021 * 12 2 1 37 37 H 1.08005 * 120.01520 * 0.02562 * 17 16 14 38 38 H 1.07993 * 119.98757 * 180.25779 * 18 17 16 39 39 H 1.07997 * 125.84396 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.98128 * 180.02562 * 26 19 18 41 41 H 1.08000 * 120.01563 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9185 -0.5486 3.6273 15 8 2.6194 -1.5398 3.6753 16 6 1.4586 0.0911 4.8753 17 6 0.6567 1.2345 4.8209 18 6 0.2249 1.8276 5.9856 19 6 0.5958 1.2938 7.2200 20 6 0.1350 1.9375 8.4739 21 7 -0.6375 3.0297 8.5532 22 6 -0.8546 3.3278 9.8065 23 7 -0.2191 2.4221 10.5725 24 1 -0.2029 2.3913 11.5419 25 7 0.4119 1.5276 9.6929 26 6 1.4003 0.1554 7.2758 27 6 1.8295 -0.4425 6.1127 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7090 1.1615 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3728 1.6504 3.8654 38 1 -0.3982 2.7087 5.9438 39 1 -1.4434 4.1587 10.1661 40 1 1.6863 -0.2570 8.2322 41 1 2.4526 -1.3235 6.1562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793229893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:02 Heat of formation + Delta-G solvation = 20.633935 kcal Electronic energy + Delta-G solvation = -24819.952714 eV Core-core repulsion = 21087.698883 eV Total energy + Delta-G solvation = -3732.253830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.45666 -40.17176 -38.69276 -36.50360 -34.81504 -33.55248 -32.29352 -31.27913 -31.09463 -30.38922 -26.14042 -25.59091 -25.24984 -24.52002 -23.50233 -22.13628 -21.48118 -20.31749 -18.88266 -18.81896 -17.75197 -16.61104 -15.89177 -15.88675 -15.77245 -15.72821 -15.39491 -14.80198 -14.44556 -14.32031 -13.58257 -13.31006 -13.14398 -12.85572 -12.66360 -12.60765 -12.21783 -11.79114 -11.46674 -11.27043 -11.15446 -10.97088 -10.82379 -10.65762 -10.49572 -10.39919 -10.38010 -10.24837 -10.09387 -9.87196 -9.39083 -9.29573 -9.13700 -8.79824 -8.72827 -8.36033 -6.00210 -4.11517 0.27513 1.27033 1.30462 2.18305 2.36446 3.01380 3.17663 3.28403 3.36891 3.41963 3.55806 3.82015 4.17141 4.40211 4.48489 4.79776 4.85308 5.07561 5.21156 5.26339 5.38599 5.52582 5.72804 5.78514 5.92659 6.09323 6.13119 6.19426 6.23315 6.30553 6.49610 6.56712 6.66421 6.76723 7.01025 7.05633 7.16836 7.17524 7.42767 7.59049 7.64844 7.72377 8.07828 8.15993 8.25163 8.41434 8.88574 9.53927 11.01022 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.002339 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.639957 B =11969.864517 C =12605.422266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.069 3.931 3 C -0.130 4.130 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.084 3.916 13 O -0.342 6.342 14 C 0.497 3.503 15 O -0.514 6.514 16 C -0.100 4.100 17 C -0.064 4.064 18 C -0.088 4.088 19 C 0.005 3.995 20 C 0.270 3.730 21 N -0.531 5.531 22 C 0.266 3.734 23 N -0.485 5.485 24 H 0.443 0.557 25 N -0.302 5.302 26 C -0.098 4.098 27 C -0.063 4.063 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.226 0.774 40 H 0.138 0.862 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 5.864 25.229 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.187 4.187 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.257 6.257 14 C 0.342 3.658 15 O -0.405 6.405 16 C -0.102 4.102 17 C -0.082 4.082 18 C -0.108 4.108 19 C 0.002 3.998 20 C -0.009 4.009 21 N -0.259 5.259 22 C -0.033 4.033 23 N -0.203 5.203 24 H 0.289 0.711 25 N -0.131 5.131 26 C -0.118 4.118 27 C -0.081 4.081 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.242 0.758 40 H 0.155 0.845 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.777 5.269 24.899 25.729 hybrid contribution 0.260 -0.372 -0.007 0.454 sum -3.517 4.897 24.892 25.612 Atomic orbital electron populations 1.21772 0.97265 0.99001 1.00704 1.18262 0.93471 0.93111 0.88251 1.21773 0.98118 0.98148 1.00705 1.20974 1.31844 1.12253 0.89772 0.92442 1.24857 0.94839 0.94933 0.98791 1.69839 1.36410 1.22581 1.23171 0.86488 0.78641 0.79692 0.82892 1.19783 1.20990 1.20985 1.23721 0.98306 0.95861 0.80926 1.86573 1.68910 1.55638 1.14604 1.21102 0.77694 0.81984 0.85052 1.90797 1.35884 1.25393 1.88452 1.19485 1.01628 0.97666 0.91375 1.21561 0.93887 0.93207 0.99553 1.21200 0.99158 1.00193 0.90205 1.17671 0.98575 0.95175 0.88382 1.22348 0.94980 0.91712 0.91899 1.70546 1.19813 1.16056 1.19445 1.26153 0.95459 0.95254 0.86468 1.48153 1.39702 1.21780 1.10670 0.71073 1.78260 1.20452 1.14325 1.00110 1.21059 0.97182 0.94661 0.98860 1.21179 0.97533 0.99326 0.90099 0.96386 0.89731 0.95814 0.95817 0.89725 0.96389 0.92975 0.92393 0.92398 0.83234 0.83844 0.75764 0.84464 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 2 C 0.07 1.70 0.58 -155.66 -0.09 1.61 16 3 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 4 C -0.51 -13.64 8.01 -34.44 -0.28 -13.92 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.08 1.89 4.27 37.15 0.16 2.04 16 13 O -0.34 -6.86 8.12 -40.60 -0.33 -7.19 16 14 C 0.50 9.17 7.89 34.54 0.27 9.44 16 15 O -0.51 -10.56 16.12 -19.26 -0.31 -10.87 16 16 C -0.10 -1.48 5.88 -104.94 -0.62 -2.09 16 17 C -0.06 -0.84 9.60 -39.23 -0.38 -1.22 16 18 C -0.09 -1.04 9.67 -39.32 -0.38 -1.42 16 19 C 0.00 0.06 5.88 -104.81 -0.62 -0.56 16 20 C 0.27 3.10 7.77 -156.60 -1.22 1.88 16 21 N -0.53 -5.41 10.81 -12.39 -0.13 -5.55 16 22 C 0.27 1.51 13.11 -90.68 -1.19 0.32 16 23 N -0.48 -2.83 7.44 29.52 0.22 -2.61 16 24 H 0.44 0.79 8.96 -182.34 -1.63 -0.84 16 25 N -0.30 -3.12 12.41 32.09 0.40 -2.73 16 26 C -0.10 -1.12 9.66 -39.32 -0.38 -1.50 16 27 C -0.06 -0.81 9.58 -39.23 -0.38 -1.19 16 28 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.15 1.94 7.60 -52.48 -0.40 1.55 16 38 H 0.14 1.53 7.82 -52.49 -0.41 1.12 16 39 H 0.23 0.06 8.06 -52.49 -0.42 -0.36 16 40 H 0.14 1.36 7.82 -52.48 -0.41 0.95 16 41 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -32.76 352.38 -10.26 -43.02 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.34 Total: -1.34 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -4.58 Total: -10.51 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 1.00 Total: -34.29 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.64 Total: -18.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.76 -10.26 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793229893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.651 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds