Wall clock time and date at job start Tue Mar 31 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.50707 * 109.47055 * 240.00179 * 2 1 3 5 5 H 1.08003 * 119.99883 * 240.00025 * 4 2 1 6 6 C 1.37874 * 120.00014 * 60.00030 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47291 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47001 * 119.99780 * 8 6 4 11 11 H 1.48500 * 109.47379 * 239.99984 * 8 6 4 12 12 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 13 13 O 1.45196 * 109.47253 * 300.00393 * 12 2 1 14 14 C 1.34741 * 117.00245 * 180.02562 * 13 12 2 15 15 O 1.21493 * 119.99807 * 359.97438 * 14 13 12 16 16 C 1.47586 * 119.99955 * 180.27282 * 14 13 12 17 17 C 1.39760 * 120.03212 * 359.44120 * 16 14 13 18 18 C 1.37652 * 119.97277 * 179.78778 * 17 16 14 19 19 C 1.39511 * 120.02387 * 0.49351 * 18 17 16 20 20 C 1.48286 * 119.96602 * 179.71809 * 19 18 17 21 21 N 1.34016 * 125.65433 * 0.02634 * 20 19 18 22 22 C 1.30645 * 109.78493 * 179.97438 * 21 20 19 23 23 N 1.34575 * 108.30372 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.73650 * 180.02562 * 23 22 21 25 25 N 1.31554 * 125.65397 * 179.71219 * 20 19 18 26 26 C 1.39515 * 120.06296 * 359.74197 * 19 18 17 27 27 C 1.37641 * 120.03116 * 0.02562 * 26 19 18 28 28 H 1.08991 * 109.47234 * 299.99785 * 1 2 3 29 29 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 30 30 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47345 * 299.99594 * 3 2 1 33 33 H 1.09000 * 109.47271 * 60.00581 * 3 2 1 34 34 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47242 * 179.97438 * 12 2 1 36 36 H 1.09010 * 109.47036 * 60.00021 * 12 2 1 37 37 H 1.08005 * 120.01520 * 0.02562 * 17 16 14 38 38 H 1.07993 * 119.98757 * 180.25779 * 18 17 16 39 39 H 1.07997 * 125.84396 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.98128 * 180.02562 * 26 19 18 41 41 H 1.08000 * 120.01563 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2863 -3.6039 10 1 1.1677 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0400 -0.7212 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9185 -0.5486 3.6273 15 8 2.6194 -1.5398 3.6753 16 6 1.4586 0.0911 4.8753 17 6 0.6567 1.2345 4.8209 18 6 0.2249 1.8276 5.9856 19 6 0.5958 1.2938 7.2200 20 6 0.1350 1.9375 8.4739 21 7 -0.6375 3.0297 8.5532 22 6 -0.8546 3.3278 9.8065 23 7 -0.2191 2.4221 10.5725 24 1 -0.2029 2.3913 11.5419 25 7 0.4119 1.5276 9.6929 26 6 1.4003 0.1554 7.2758 27 6 1.8295 -0.4425 6.1127 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7090 1.1615 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.3728 1.6504 3.8654 38 1 -0.3982 2.7087 5.9438 39 1 -1.4434 4.1587 10.1661 40 1 1.6863 -0.2570 8.2322 41 1 2.4526 -1.3235 6.1562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793229893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:02 Heat of formation + Delta-G solvation = 3.772354 kcal Electronic energy + Delta-G solvation = -24820.683887 eV Core-core repulsion = 21087.698883 eV Total energy + Delta-G solvation = -3732.985003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.06803 -41.58169 -39.84251 -38.21053 -36.60241 -34.32368 -33.29190 -32.95974 -32.05954 -31.27436 -27.75802 -27.54269 -27.19304 -25.77399 -24.29358 -22.94917 -22.60248 -21.34347 -20.70308 -19.46488 -19.07106 -17.92478 -17.75844 -17.33605 -16.95407 -16.61761 -16.50181 -16.17552 -15.50368 -15.28258 -14.92832 -14.85514 -14.57154 -14.50160 -13.84572 -13.68727 -13.30600 -13.29311 -13.17840 -13.03660 -12.82775 -12.58840 -12.31531 -12.21231 -12.12386 -11.71278 -11.71028 -11.55026 -11.26303 -11.18787 -11.15486 -11.04891 -10.70963 -10.38950 -10.10127 -9.72855 -8.03082 -6.20783 -0.73509 0.30959 0.65324 1.36581 1.43067 1.45858 1.55495 1.72511 1.73768 2.00697 2.46545 2.79932 2.92833 3.20298 3.50747 3.63913 3.90152 3.92686 4.14255 4.22520 4.28356 4.28686 4.43363 4.61004 4.66511 4.83061 4.93666 4.98963 5.07518 5.09839 5.22480 5.23233 5.26225 5.31034 5.34645 5.40845 5.56662 5.66525 5.66977 5.69081 6.10474 6.19984 6.23027 6.39034 6.70488 6.84447 6.99396 7.46931 8.96721 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.002339 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.639957 B =11969.864517 C =12605.422266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.532 4.532 5 H 0.049 0.951 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.096 3.904 13 O -0.344 6.344 14 C 0.498 3.502 15 O -0.541 6.541 16 C -0.122 4.122 17 C -0.061 4.061 18 C -0.084 4.084 19 C 0.010 3.990 20 C 0.248 3.752 21 N -0.568 5.568 22 C 0.283 3.717 23 N -0.470 5.470 24 H 0.462 0.538 25 N -0.325 5.325 26 C -0.092 4.092 27 C -0.059 4.059 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.279 0.721 40 H 0.154 0.846 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 6.893 27.501 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.177 4.177 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.023 3.977 13 O -0.259 6.259 14 C 0.345 3.655 15 O -0.434 6.434 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.104 4.104 19 C 0.007 3.993 20 C -0.032 4.032 21 N -0.296 5.296 22 C -0.014 4.014 23 N -0.190 5.190 24 H 0.311 0.689 25 N -0.155 5.155 26 C -0.112 4.112 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.174 0.826 39 H 0.294 0.706 40 H 0.172 0.828 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.519 6.306 27.216 28.300 hybrid contribution 0.420 -0.596 -0.474 0.870 sum -4.099 5.710 26.742 27.650 Atomic orbital electron populations 1.21628 0.96977 0.98645 1.00450 1.18283 0.93726 0.93329 0.88617 1.21628 0.97759 0.97863 1.00452 1.21219 1.32206 1.12410 0.91130 0.93285 1.25507 0.95038 0.95605 1.01147 1.69944 1.36749 1.23238 1.23757 0.85595 0.78138 0.78646 0.79754 1.19791 1.20575 1.20569 1.23322 0.97694 0.95306 0.81407 1.86555 1.69102 1.55543 1.14732 1.21712 0.76924 0.81633 0.85270 1.90775 1.37272 1.26685 1.88634 1.19346 1.03946 0.99035 0.90098 1.21551 0.93532 0.92681 1.00146 1.21268 0.99074 1.00398 0.89697 1.17900 0.97484 0.94805 0.89069 1.22245 0.96326 0.92765 0.91842 1.70510 1.20783 1.16279 1.22033 1.27123 0.93950 0.95280 0.85096 1.48106 1.38675 1.20842 1.11416 0.68869 1.78143 1.21288 1.15809 1.00306 1.21174 0.96705 0.94405 0.98897 1.21239 0.97292 0.99346 0.89793 0.94678 0.91756 0.96171 0.96173 0.91750 0.94677 0.92846 0.93080 0.93087 0.83307 0.82629 0.70621 0.82812 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.11 71.98 0.58 -5.17 16 2 C 0.06 3.01 0.58 -52.93 -0.03 2.98 16 3 C -0.12 -5.76 8.11 71.98 0.58 -5.17 16 4 C -0.53 -28.79 8.01 25.60 0.21 -28.58 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.45 5.15 84.65 0.44 1.88 16 7 N -0.90 -49.08 9.35 21.45 0.20 -48.88 16 8 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.10 4.36 4.27 71.98 0.31 4.66 16 13 O -0.34 -13.90 8.12 -56.51 -0.46 -14.36 16 14 C 0.50 18.60 7.89 70.29 0.55 19.15 16 15 O -0.54 -22.64 16.12 19.86 0.32 -22.32 16 16 C -0.12 -3.62 5.88 -20.07 -0.12 -3.73 16 17 C -0.06 -1.58 9.60 22.50 0.22 -1.36 16 18 C -0.08 -1.91 9.67 22.44 0.22 -1.69 16 19 C 0.01 0.23 5.88 -19.99 -0.12 0.11 16 20 C 0.25 5.24 7.77 137.40 1.07 6.31 16 21 N -0.57 -10.19 10.81 -193.12 -2.09 -12.27 16 22 C 0.28 2.18 13.11 180.37 2.36 4.55 16 23 N -0.47 -4.02 7.44 -60.51 -0.45 -4.47 16 24 H 0.46 0.10 8.96 -213.10 -1.91 -1.81 16 25 N -0.32 -6.03 12.41 -52.39 -0.65 -6.68 16 26 C -0.09 -2.00 9.66 22.44 0.22 -1.78 16 27 C -0.06 -1.47 9.58 22.50 0.22 -1.26 16 28 H 0.03 1.52 7.68 -2.39 -0.02 1.50 16 29 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 33 H 0.03 1.52 7.68 -2.39 -0.02 1.50 16 34 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.15 3.81 7.60 -2.91 -0.02 3.79 16 38 H 0.16 3.11 7.82 -2.91 -0.02 3.09 16 39 H 0.28 -1.30 8.06 -2.91 -0.02 -1.32 16 40 H 0.15 2.81 7.82 -2.91 -0.02 2.78 16 41 H 0.15 3.52 7.64 -2.91 -0.02 3.50 16 Total: -1.00 -71.02 352.38 4.76 -66.26 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -0.84 Total: 6.81 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 6.70 Total: -9.11 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -2.99 Total: -72.30 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.14 Total: -36.68 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.02 4.76 -66.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793229893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.033 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds