Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 119.99875 * 2 1 4 4 N 1.46904 * 109.47347 * 124.18138 * 3 2 1 5 5 C 1.46905 * 110.99633 * 302.21389 * 4 3 2 6 6 C 1.50703 * 109.47038 * 288.72517 * 5 4 3 7 7 H 1.08002 * 119.99771 * 358.74457 * 6 5 4 8 8 C 1.37870 * 119.99942 * 178.74356 * 6 5 4 9 9 N 1.31516 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47139 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47329 * 119.99983 * 10 8 6 13 13 H 1.48500 * 109.47220 * 239.99940 * 10 8 6 14 14 C 1.46898 * 110.99970 * 66.16333 * 4 3 2 15 15 N 1.46503 * 109.46986 * 81.04616 * 14 4 3 16 16 N 1.40273 * 126.57200 * 75.02722 * 15 14 4 17 17 C 1.30150 * 107.75094 * 179.97438 * 16 15 14 18 18 C 1.47907 * 125.46778 * 179.73818 * 17 16 15 19 19 C 1.39533 * 120.13448 * 359.71619 * 18 17 16 20 20 C 1.37981 * 119.85100 * 179.74758 * 19 18 17 21 21 C 1.38341 * 120.14217 * 0.53567 * 20 19 18 22 22 C 1.38360 * 120.28478 * 359.73684 * 21 20 19 23 23 C 1.37970 * 120.13870 * 359.97438 * 22 21 20 24 24 O 1.35089 * 109.06967 * 359.97438 * 17 16 15 25 25 C 1.34319 * 108.86252 * 0.02562 * 24 17 16 26 26 O 1.21693 * 126.26336 * 179.97438 * 25 24 17 27 27 H 1.08011 * 119.99727 * 180.02562 * 1 2 3 28 28 H 1.07990 * 120.00469 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99956 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47112 * 4.17954 * 3 2 1 31 31 H 1.08997 * 109.47417 * 244.18083 * 3 2 1 32 32 H 1.08999 * 109.46967 * 48.72589 * 5 4 3 33 33 H 1.08998 * 109.46769 * 168.72639 * 5 4 3 34 34 H 0.97005 * 120.00014 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46770 * 321.05203 * 14 4 3 36 36 H 1.09003 * 109.47199 * 201.04856 * 14 4 3 37 37 H 1.07995 * 120.07521 * 0.02562 * 19 18 17 38 38 H 1.07995 * 119.92436 * 180.25397 * 20 19 18 39 39 H 1.08000 * 119.85884 * 179.76485 * 21 20 19 40 40 H 1.07997 * 119.92689 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.06953 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9822 1.3401 1.1458 5 6 2.2540 1.1672 2.4099 6 6 1.4507 2.4087 2.7007 7 1 1.4942 3.2505 2.0255 8 6 0.6603 2.4699 3.8287 9 7 0.6069 1.4445 4.6506 10 14 -0.3359 4.0084 4.1889 11 1 -0.1037 5.0105 3.1178 12 1 -1.7793 3.6630 4.2397 13 1 0.0837 4.5752 5.4957 14 6 4.0388 0.3294 1.0044 15 7 5.0863 0.8390 0.1159 16 7 6.0556 1.8020 0.4330 17 6 6.7982 1.9795 -0.6210 18 6 7.9386 2.9163 -0.7196 19 6 8.2924 3.7067 0.3744 20 6 9.3605 4.5748 0.2777 21 6 10.0731 4.6706 -0.9042 22 6 9.7237 3.8937 -1.9945 23 6 8.6614 3.0174 -1.9088 24 8 6.3571 1.1747 -1.6123 25 6 5.3042 0.4712 -1.1644 26 8 4.6639 -0.3477 -1.7972 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3575 2.1322 0.0749 31 1 2.6327 1.3960 -0.9250 32 1 1.5837 0.3115 2.3289 33 1 2.9649 0.9968 3.2183 34 1 0.0505 1.4874 5.4440 35 1 3.6156 -0.5819 0.5819 36 1 4.4666 0.1117 1.9831 37 1 7.7344 3.6359 1.2963 38 1 9.6380 5.1842 1.1251 39 1 10.9059 5.3544 -0.9761 40 1 10.2842 3.9728 -2.9142 41 1 8.3899 2.4112 -2.7603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793575303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = 62.097664 kcal Electronic energy + Delta-G solvation = -25557.375367 eV Core-core repulsion = 21826.919539 eV Total energy + Delta-G solvation = -3730.455828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.22292 -39.39775 -38.09268 -37.42023 -35.59795 -32.99871 -32.87461 -31.99890 -31.30619 -30.05011 -27.42647 -26.51121 -24.74418 -23.70873 -23.16185 -22.03348 -21.53800 -21.10140 -19.19270 -18.03904 -17.57749 -16.99171 -16.46045 -16.20763 -16.08162 -15.29661 -15.22871 -14.96424 -14.72866 -14.33227 -14.13120 -13.94099 -13.74910 -13.62255 -12.76903 -12.68654 -12.29368 -12.17219 -12.07624 -11.74490 -11.71324 -11.37319 -11.25311 -11.06404 -10.80730 -10.78429 -10.64829 -10.56501 -10.04874 -9.73473 -9.39355 -9.29882 -8.78967 -8.51127 -8.45465 -7.56068 -6.07748 -4.08674 0.42731 1.06649 1.78449 2.01719 2.35175 2.55767 2.85229 3.28191 3.36066 3.40828 3.49977 4.06210 4.38658 4.59053 4.63489 4.67246 4.86528 4.90878 5.06463 5.17825 5.28564 5.34941 5.45566 5.46392 5.56119 5.60382 5.71477 5.75479 5.95467 6.05978 6.09702 6.13924 6.17871 6.37783 6.54207 6.54724 6.99389 7.11535 7.19811 7.33044 7.49131 7.64793 7.71502 7.89750 8.03951 8.37973 8.97351 9.55193 11.02875 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003563 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.303613 B = 7855.729163 C = 9383.951383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.092 3.908 4 N -0.538 5.538 5 C 0.197 3.803 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.306 3.694 15 N -0.431 5.431 16 N -0.225 5.225 17 C 0.259 3.741 18 C -0.023 4.023 19 C -0.066 4.066 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.081 4.081 24 O -0.274 6.274 25 C 0.603 3.397 26 O -0.490 6.490 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.011 0.989 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.202 3.008 -10.647 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C -0.036 4.036 4 N -0.262 5.262 5 C 0.073 3.927 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.098 3.902 15 N -0.263 5.263 16 N -0.053 5.053 17 C 0.036 3.964 18 C -0.025 4.025 19 C -0.086 4.086 20 C -0.139 4.139 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.101 4.101 24 O -0.171 6.171 25 C 0.354 3.646 26 O -0.372 6.372 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.741 3.068 -10.073 19.778 hybrid contribution -1.040 -0.296 -0.367 1.142 sum 15.701 2.772 -10.441 19.058 Atomic orbital electron populations 1.23696 0.95858 1.01311 0.99975 1.23422 0.96847 0.99310 1.00685 1.21239 0.94656 0.95099 0.92592 1.62004 1.12764 1.46075 1.05382 1.19819 0.92389 0.97692 0.82799 1.21070 1.25044 1.00338 1.07653 0.91906 1.24937 0.96907 0.96469 0.96066 1.69954 1.40194 1.30062 1.13437 0.86457 0.79690 0.83124 0.78259 1.19696 1.21101 1.20996 1.22149 0.83950 0.91356 0.92795 1.50643 1.28280 1.35603 1.11808 1.77538 1.00123 1.07241 1.20427 1.23817 0.96669 0.93790 0.82159 1.17291 0.92462 0.96339 0.96415 1.21286 0.96154 0.93320 0.97855 1.21141 0.95429 0.98858 0.98446 1.21408 0.99130 0.98160 0.92978 1.21089 0.97286 0.96509 0.99262 1.21268 0.94474 0.97888 0.96446 1.85096 1.43522 1.48583 1.39916 1.19392 0.79988 0.82566 0.82618 1.91190 1.49622 1.34016 1.62332 0.89385 0.88376 0.88429 0.89259 0.92638 0.97090 0.95108 0.92929 0.89843 0.87737 0.83962 0.84841 0.85418 0.85125 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 14.32 29.01 0.42 -2.63 16 2 C -0.18 -3.43 7.35 -36.03 -0.26 -3.70 16 3 C 0.09 1.84 5.61 -4.98 -0.03 1.81 16 4 N -0.54 -11.39 4.76 -241.42 -1.15 -12.54 16 5 C 0.20 4.85 4.55 -4.97 -0.02 4.83 16 6 C -0.50 -13.62 8.59 -34.44 -0.30 -13.92 16 7 H 0.06 1.73 7.50 -52.49 -0.39 1.33 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 10 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.31 5.61 6.16 -63.31 -0.39 5.22 16 15 N -0.43 -7.65 3.79 -68.30 -0.26 -7.91 16 16 N -0.22 -3.73 12.16 31.97 0.39 -3.34 16 17 C 0.26 3.74 7.94 -14.31 -0.11 3.63 16 18 C -0.02 -0.26 5.87 -104.97 -0.62 -0.88 16 19 C -0.07 -0.66 9.68 -39.19 -0.38 -1.04 16 20 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 21 C -0.10 -0.65 10.04 -39.50 -0.40 -1.04 16 22 C -0.12 -0.87 10.03 -39.63 -0.40 -1.27 16 23 C -0.08 -0.74 9.71 -39.20 -0.38 -1.12 16 24 O -0.27 -4.33 10.43 -20.74 -0.22 -4.54 16 25 C 0.60 10.82 8.96 54.15 0.49 11.31 16 26 O -0.49 -9.74 17.75 -19.00 -0.34 -10.08 16 27 H 0.09 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.10 1.77 7.84 -52.49 -0.41 1.36 16 29 H 0.10 1.75 6.76 -52.49 -0.36 1.40 16 30 H 0.09 1.89 6.96 -51.93 -0.36 1.53 16 31 H 0.06 1.09 7.78 -51.93 -0.40 0.69 16 32 H 0.01 0.29 6.65 -51.93 -0.35 -0.05 16 33 H 0.03 0.80 7.66 -51.93 -0.40 0.41 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.47 5.88 -51.93 -0.31 1.16 16 36 H 0.10 1.82 7.56 -51.93 -0.39 1.43 16 37 H 0.14 1.47 7.82 -52.49 -0.41 1.06 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 1.12 7.89 -52.49 -0.41 0.70 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -31.31 358.17 -8.36 -39.66 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.02 Total: 0.76 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.88 Total: 1.36 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.28 Total: -48.85 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.55 Total: -14.62 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.31 -8.36 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793575303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.759 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds