Wall clock time and date at job start Tue Mar 31 2020 12:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 119.99875 * 2 1 4 4 N 1.46904 * 109.47347 * 124.18138 * 3 2 1 5 5 C 1.46905 * 110.99633 * 302.21389 * 4 3 2 6 6 C 1.50703 * 109.47038 * 288.72517 * 5 4 3 7 7 H 1.08002 * 119.99771 * 358.74457 * 6 5 4 8 8 C 1.37870 * 119.99942 * 178.74356 * 6 5 4 9 9 N 1.31516 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47139 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47329 * 119.99983 * 10 8 6 13 13 H 1.48500 * 109.47220 * 239.99940 * 10 8 6 14 14 C 1.46898 * 110.99970 * 66.16333 * 4 3 2 15 15 N 1.46503 * 109.46986 * 81.04616 * 14 4 3 16 16 N 1.40273 * 126.57200 * 75.02722 * 15 14 4 17 17 C 1.30150 * 107.75094 * 179.97438 * 16 15 14 18 18 C 1.47907 * 125.46778 * 179.73818 * 17 16 15 19 19 C 1.39533 * 120.13448 * 359.71619 * 18 17 16 20 20 C 1.37981 * 119.85100 * 179.74758 * 19 18 17 21 21 C 1.38341 * 120.14217 * 0.53567 * 20 19 18 22 22 C 1.38360 * 120.28478 * 359.73684 * 21 20 19 23 23 C 1.37970 * 120.13870 * 359.97438 * 22 21 20 24 24 O 1.35089 * 109.06967 * 359.97438 * 17 16 15 25 25 C 1.34319 * 108.86252 * 0.02562 * 24 17 16 26 26 O 1.21693 * 126.26336 * 179.97438 * 25 24 17 27 27 H 1.08011 * 119.99727 * 180.02562 * 1 2 3 28 28 H 1.07990 * 120.00469 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99956 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47112 * 4.17954 * 3 2 1 31 31 H 1.08997 * 109.47417 * 244.18083 * 3 2 1 32 32 H 1.08999 * 109.46967 * 48.72589 * 5 4 3 33 33 H 1.08998 * 109.46769 * 168.72639 * 5 4 3 34 34 H 0.97005 * 120.00014 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46770 * 321.05203 * 14 4 3 36 36 H 1.09003 * 109.47199 * 201.04856 * 14 4 3 37 37 H 1.07995 * 120.07521 * 0.02562 * 19 18 17 38 38 H 1.07995 * 119.92436 * 180.25397 * 20 19 18 39 39 H 1.08000 * 119.85884 * 179.76485 * 21 20 19 40 40 H 1.07997 * 119.92689 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.06953 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9822 1.3401 1.1458 5 6 2.2540 1.1672 2.4099 6 6 1.4507 2.4087 2.7007 7 1 1.4942 3.2505 2.0255 8 6 0.6603 2.4699 3.8287 9 7 0.6069 1.4445 4.6506 10 14 -0.3359 4.0084 4.1889 11 1 -0.1037 5.0105 3.1178 12 1 -1.7793 3.6630 4.2397 13 1 0.0837 4.5752 5.4957 14 6 4.0388 0.3294 1.0044 15 7 5.0863 0.8390 0.1159 16 7 6.0556 1.8020 0.4330 17 6 6.7982 1.9795 -0.6210 18 6 7.9386 2.9163 -0.7196 19 6 8.2924 3.7067 0.3744 20 6 9.3605 4.5748 0.2777 21 6 10.0731 4.6706 -0.9042 22 6 9.7237 3.8937 -1.9945 23 6 8.6614 3.0174 -1.9088 24 8 6.3571 1.1747 -1.6123 25 6 5.3042 0.4712 -1.1644 26 8 4.6639 -0.3477 -1.7972 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3575 2.1322 0.0749 31 1 2.6327 1.3960 -0.9250 32 1 1.5837 0.3115 2.3289 33 1 2.9649 0.9968 3.2183 34 1 0.0505 1.4874 5.4440 35 1 3.6156 -0.5819 0.5819 36 1 4.4666 0.1117 1.9831 37 1 7.7344 3.6359 1.2963 38 1 9.6380 5.1842 1.1251 39 1 10.9059 5.3544 -0.9761 40 1 10.2842 3.9728 -2.9142 41 1 8.3899 2.4112 -2.7603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793575303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:57 Heat of formation + Delta-G solvation = 41.743780 kcal Electronic energy + Delta-G solvation = -25558.257978 eV Core-core repulsion = 21826.919539 eV Total energy + Delta-G solvation = -3731.338439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.53669 -40.17235 -39.54895 -38.93277 -36.98939 -34.86037 -34.17936 -33.39737 -31.97778 -31.22909 -29.25584 -28.00637 -26.21513 -25.09197 -24.21187 -23.13928 -22.75086 -22.53440 -20.69959 -19.15979 -18.92944 -18.40085 -18.09886 -17.59591 -17.11632 -16.99355 -16.42403 -16.37179 -16.13762 -15.64868 -15.55540 -14.88489 -14.82030 -14.39339 -14.36527 -14.11087 -13.79881 -13.57227 -13.41324 -13.25258 -12.98810 -12.78442 -12.62414 -12.40002 -12.39111 -12.29490 -12.14737 -12.03606 -11.97166 -11.41546 -10.77821 -10.60363 -10.28206 -9.94020 -9.56508 -9.27617 -8.18704 -6.26713 -0.43818 0.41362 0.43321 0.89604 1.06671 1.36422 1.38418 1.40617 1.42370 1.54368 2.40607 2.82459 2.82800 3.14774 3.25137 3.50650 3.91888 3.94921 3.98386 4.02575 4.11258 4.17692 4.23407 4.31543 4.39873 4.48442 4.57504 4.69734 4.84243 4.88734 4.96858 5.10595 5.11509 5.22939 5.37935 5.47076 5.54539 5.61307 5.65076 5.80411 5.94580 5.95829 6.12509 6.14970 6.38221 6.43210 6.85141 7.41362 8.91736 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.003563 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.303613 B = 7855.729163 C = 9383.951383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.197 4.197 3 C 0.100 3.900 4 N -0.548 5.548 5 C 0.216 3.784 6 C -0.515 4.515 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.313 3.687 15 N -0.436 5.436 16 N -0.260 5.260 17 C 0.281 3.719 18 C -0.056 4.056 19 C -0.077 4.077 20 C -0.122 4.122 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.084 4.084 24 O -0.270 6.270 25 C 0.602 3.398 26 O -0.514 6.514 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.056 0.944 32 H -0.004 1.004 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.916 4.690 -11.550 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.217 4.217 3 C -0.028 4.028 4 N -0.272 5.272 5 C 0.091 3.909 6 C -0.553 4.553 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.205 1.205 14 C 0.104 3.896 15 N -0.267 5.267 16 N -0.088 5.088 17 C 0.058 3.942 18 C -0.058 4.058 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.137 4.137 23 C -0.104 4.104 24 O -0.166 6.166 25 C 0.354 3.646 26 O -0.398 6.398 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.014 0.986 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.179 0.821 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.483 4.763 -10.987 22.023 hybrid contribution -1.364 -0.716 -0.166 1.549 sum 17.119 4.048 -11.154 20.829 Atomic orbital electron populations 1.23891 0.95646 1.02249 0.98394 1.23400 0.97266 0.98908 1.02092 1.21093 0.94265 0.95380 0.92014 1.61863 1.13190 1.47665 1.04460 1.19414 0.91520 0.96212 0.83790 1.21299 1.25511 1.00848 1.07665 0.92766 1.25707 0.97888 0.99335 0.95846 1.70055 1.41002 1.31858 1.13910 0.85464 0.78271 0.79565 0.78095 1.19327 1.20450 1.20458 1.22064 0.83340 0.90885 0.93360 1.50437 1.28481 1.36177 1.11628 1.77578 1.01158 1.08532 1.21515 1.24632 0.96176 0.92441 0.80905 1.17486 0.92727 0.97356 0.98213 1.21337 0.97163 0.94072 0.97121 1.21454 0.94418 0.98182 0.99911 1.21877 0.99002 0.97382 0.91888 1.21481 0.96304 0.95235 1.00702 1.21449 0.94858 0.98441 0.95624 1.85094 1.42833 1.48554 1.40129 1.19378 0.80227 0.82501 0.82525 1.91158 1.50640 1.35103 1.62881 0.87096 0.88781 0.87611 0.90874 0.92574 0.98585 0.97079 0.92697 0.89105 0.87311 0.85245 0.82585 0.81918 0.82056 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 14.32 67.78 0.97 -4.84 16 2 C -0.20 -7.46 7.35 25.64 0.19 -7.27 16 3 C 0.10 4.10 5.61 85.55 0.48 4.58 16 4 N -0.55 -23.90 4.76 -917.73 -4.37 -28.27 16 5 C 0.22 10.95 4.55 85.56 0.39 11.34 16 6 C -0.51 -28.43 8.59 25.60 0.22 -28.21 16 7 H 0.05 3.03 7.50 -2.91 -0.02 3.01 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -53.90 13.29 21.44 0.28 -53.61 16 10 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.31 11.81 6.16 170.81 1.05 12.86 16 15 N -0.44 -15.93 3.79 -600.27 -2.27 -18.21 16 16 N -0.26 -8.90 12.16 -167.01 -2.03 -10.93 16 17 C 0.28 8.24 7.94 87.51 0.69 8.94 16 18 C -0.06 -1.22 5.87 -20.09 -0.12 -1.34 16 19 C -0.08 -1.49 9.68 22.52 0.22 -1.27 16 20 C -0.12 -1.54 10.03 22.23 0.22 -1.31 16 21 C -0.08 -0.76 10.04 22.32 0.22 -0.53 16 22 C -0.12 -1.25 10.03 22.24 0.22 -1.03 16 23 C -0.08 -1.38 9.71 22.52 0.22 -1.16 16 24 O -0.27 -8.60 10.43 12.59 0.13 -8.47 16 25 C 0.60 22.08 8.96 129.76 1.16 23.25 16 26 O -0.51 -20.82 17.75 18.81 0.33 -20.49 16 27 H 0.11 3.39 8.06 -2.90 -0.02 3.37 16 28 H 0.09 3.39 7.84 -2.92 -0.02 3.36 16 29 H 0.11 3.81 6.76 -2.91 -0.02 3.79 16 30 H 0.07 3.19 6.96 -2.39 -0.02 3.18 16 31 H 0.06 2.27 7.78 -2.39 -0.02 2.25 16 32 H 0.00 -0.19 6.65 -2.39 -0.02 -0.21 16 33 H 0.01 0.60 7.66 -2.39 -0.02 0.59 16 34 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 35 H 0.09 3.28 5.88 -2.39 -0.01 3.26 16 36 H 0.11 3.96 7.56 -2.39 -0.02 3.94 16 37 H 0.13 2.77 7.82 -2.91 -0.02 2.74 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 41 H 0.14 2.10 7.89 -2.91 -0.02 2.07 16 Total: -1.00 -68.17 358.17 1.76 -66.41 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.05 Total: 12.67 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.61 Total: 15.07 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -8.39 Total: -111.02 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: 0.47 Total: -28.96 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.17 1.76 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793575303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.157 kcal (2) G-P(sol) polarization free energy of solvation -68.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds