Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46626 * 2 1 4 4 N 1.46496 * 109.46882 * 119.99881 * 2 1 3 5 5 N 1.40445 * 126.82272 * 299.97343 * 4 2 1 6 6 C 1.30720 * 106.78941 * 180.02562 * 5 4 2 7 7 N 1.33235 * 108.94625 * 0.24450 * 6 5 4 8 8 C 1.30829 * 109.83023 * 359.58942 * 7 6 5 9 9 C 1.50704 * 125.95933 * 180.19429 * 8 7 6 10 10 O 1.45201 * 109.47219 * 270.24263 * 9 8 7 11 11 C 1.34805 * 117.00385 * 180.02562 * 10 9 8 12 12 O 1.21528 * 119.99680 * 0.02562 * 11 10 9 13 13 C 1.47279 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.39295 * 120.29149 * 357.17372 * 13 11 10 15 15 C 1.38196 * 120.08566 * 179.97438 * 14 13 11 16 16 C 1.38838 * 120.68895 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.57964 * 359.97438 * 16 15 14 18 18 C 1.40708 * 119.88687 * 359.75103 * 17 16 15 19 19 C 1.40864 * 120.33540 * 180.24967 * 18 17 16 20 20 H 1.07995 * 120.00357 * 214.91425 * 19 18 17 21 21 C 1.40299 * 119.99354 * 34.92010 * 19 18 17 22 22 N 1.30607 * 120.00482 * 9.90684 * 21 19 18 23 23 Si 1.86807 * 119.99600 * 189.91059 * 21 19 18 24 24 H 1.48499 * 109.46874 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46846 * 119.99655 * 23 21 19 26 26 H 1.48498 * 109.46728 * 239.99711 * 23 21 19 27 27 H 1.09005 * 109.47034 * 60.00055 * 1 2 3 28 28 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47175 * 300.00050 * 1 2 3 30 30 H 1.08996 * 109.47175 * 239.99950 * 2 1 3 31 31 H 1.08997 * 109.46642 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47226 * 299.99607 * 3 2 1 33 33 H 1.08996 * 109.47384 * 60.00078 * 3 2 1 34 34 H 1.08004 * 125.52563 * 179.97438 * 6 5 4 35 35 H 1.08992 * 109.47297 * 30.24643 * 9 8 7 36 36 H 1.09008 * 109.46923 * 150.24874 * 9 8 7 37 37 H 1.07998 * 119.95248 * 359.95778 * 14 13 11 38 38 H 1.07998 * 119.65767 * 180.02562 * 15 14 13 39 39 H 1.07995 * 119.71185 * 179.97438 * 16 15 14 40 40 H 1.08001 * 120.06120 * 179.97438 * 17 16 15 41 41 H 0.97005 * 120.00151 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7693 -0.3375 2.5325 6 6 2.3900 -1.2148 3.2768 7 7 3.0137 -2.0880 2.4871 8 6 2.7942 -1.7877 1.2328 9 6 3.3232 -2.5378 0.0375 10 8 4.6108 -1.9883 -0.3478 11 6 5.2239 -2.5511 -1.4082 12 8 4.6965 -3.4755 -1.9949 13 6 6.5329 -2.0458 -1.8557 14 6 7.1158 -0.9491 -1.2248 15 6 8.3444 -0.4788 -1.6479 16 6 9.0118 -1.0882 -2.7018 17 6 8.4618 -2.1733 -3.3449 18 6 7.2146 -2.6758 -2.9303 19 6 6.6452 -3.7894 -3.5785 20 1 5.5744 -3.8521 -3.7038 21 6 7.4694 -4.8170 -4.0613 22 7 8.7362 -4.8415 -3.7445 23 14 6.7548 -6.1503 -5.1573 24 1 5.3064 -5.8966 -5.3652 25 1 7.4527 -6.1403 -6.4681 26 1 6.9371 -7.4740 -4.5095 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 2.3996 -1.2270 4.3567 35 1 3.4392 -3.5913 0.2919 36 1 2.6232 -2.4393 -0.7922 37 1 6.6066 -0.4657 -0.4042 38 1 8.7902 0.3717 -1.1535 39 1 9.9711 -0.7074 -3.0197 40 1 8.9881 -2.6406 -4.1640 41 1 9.3061 -5.5519 -4.0786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801218815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = 20.834035 kcal Electronic energy + Delta-G solvation = -25762.096805 eV Core-core repulsion = 22029.851652 eV Total energy + Delta-G solvation = -3732.245153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19022 -39.50394 -37.37759 -36.27417 -35.51743 -33.82206 -32.02848 -31.04788 -30.18747 -29.71650 -27.55712 -27.35124 -25.56044 -23.61345 -22.74010 -21.25641 -21.08040 -20.12704 -19.81524 -17.64329 -17.32804 -16.85548 -15.94146 -15.62904 -15.51610 -15.28689 -14.89313 -14.53932 -14.32536 -13.91289 -13.50093 -13.37073 -13.06217 -12.84041 -12.80363 -12.60072 -12.51686 -12.11688 -11.90933 -11.71847 -11.69991 -11.24639 -11.22828 -11.16191 -10.74636 -10.69081 -10.28760 -10.17941 -10.00301 -9.80258 -9.78208 -9.68491 -9.40795 -8.86713 -7.73133 -7.50347 -6.96115 -4.57622 1.40897 2.10306 2.14161 2.72427 2.78536 3.02770 3.11336 3.13811 3.52828 3.77486 3.86251 4.17813 4.20930 4.53025 4.61516 4.63602 4.79655 4.82047 5.25471 5.28966 5.31578 5.45431 5.46782 5.52962 5.56846 5.84310 5.92955 5.99628 6.06460 6.23897 6.27803 6.40131 6.47579 6.69604 6.84480 6.96301 7.05851 7.14584 7.37391 7.54145 7.81423 7.86424 8.06116 8.06161 8.49360 8.64015 8.70457 8.93857 9.98840 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003650 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.027755 B = 7669.089844 C = 8375.147242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 C -0.159 4.159 4 N -0.358 5.358 5 N -0.314 5.314 6 C 0.194 3.806 7 N -0.525 5.525 8 C 0.283 3.717 9 C 0.147 3.853 10 O -0.362 6.362 11 C 0.508 3.492 12 O -0.513 6.513 13 C -0.250 4.250 14 C -0.036 4.036 15 C -0.246 4.246 16 C -0.089 4.089 17 C -0.147 4.147 18 C 0.149 3.851 19 C -0.420 4.420 20 H 0.112 0.888 21 C 0.070 3.930 22 N -0.782 5.782 23 Si 0.918 3.082 24 H -0.255 1.255 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 6.996 4.382 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.217 4.217 4 N -0.151 5.151 5 N -0.143 5.143 6 C -0.108 4.108 7 N -0.254 5.254 8 C 0.007 3.993 9 C 0.070 3.930 10 O -0.280 6.280 11 C 0.359 3.641 12 O -0.403 6.403 13 C -0.253 4.253 14 C -0.054 4.054 15 C -0.265 4.265 16 C -0.108 4.108 17 C -0.166 4.166 18 C 0.145 3.855 19 C -0.448 4.448 20 H 0.129 0.871 21 C -0.150 4.150 22 N -0.406 5.406 23 Si 0.742 3.258 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.034 6.934 4.497 13.786 hybrid contribution -0.121 -0.740 -0.392 0.846 sum -11.155 6.194 4.104 13.403 Atomic orbital electron populations 1.22134 0.92845 1.03093 1.03648 1.21544 0.95792 0.94721 0.83505 1.22106 1.02514 0.93672 1.03403 1.50602 1.37658 1.20794 1.06015 1.77943 1.25786 1.23826 0.86717 1.25961 0.94111 0.89563 1.01192 1.70483 1.25564 1.29845 0.99505 1.23821 0.92609 0.88140 0.94753 1.20815 0.85098 0.96964 0.90134 1.86662 1.31996 1.60008 1.49363 1.21421 0.85791 0.80620 0.76250 1.90731 1.65598 1.28645 1.55368 1.18666 0.95492 1.06356 1.04787 1.20820 0.94331 0.94136 0.96126 1.20363 0.97915 1.04523 1.03686 1.20864 0.97804 0.96184 0.95929 1.21293 0.97430 0.96215 1.01679 1.17447 0.90299 0.90511 0.87236 1.20407 0.96887 1.00789 1.26671 0.87058 1.26191 0.94275 0.99901 0.94652 1.69709 1.05926 1.30782 1.34232 0.86083 0.80850 0.79601 0.79314 1.17877 1.19657 1.19703 0.90258 0.92001 0.91047 0.87401 0.91433 0.90312 0.91184 0.76589 0.87796 0.89586 0.88120 0.88771 0.88769 0.86354 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.47 37.16 0.35 -1.00 16 2 C 0.15 1.57 3.68 -67.93 -0.25 1.32 16 3 C -0.16 -1.57 9.47 37.16 0.35 -1.22 16 4 N -0.36 -4.90 3.28 -51.88 -0.17 -5.07 16 5 N -0.31 -4.36 12.60 29.29 0.37 -4.00 16 6 C 0.19 2.60 13.03 -91.81 -1.20 1.41 16 7 N -0.53 -8.47 11.19 -11.97 -0.13 -8.60 16 8 C 0.28 4.41 7.62 -155.70 -1.19 3.22 16 9 C 0.15 2.37 5.63 36.01 0.20 2.57 16 10 O -0.36 -7.14 9.46 -40.78 -0.39 -7.52 16 11 C 0.51 11.64 7.86 34.41 0.27 11.91 16 12 O -0.51 -12.51 13.30 -19.29 -0.26 -12.76 16 13 C -0.25 -6.08 5.92 -104.39 -0.62 -6.70 16 14 C -0.04 -0.79 9.60 -39.20 -0.38 -1.16 16 15 C -0.25 -5.20 10.03 -39.37 -0.39 -5.60 16 16 C -0.09 -1.94 10.01 -39.59 -0.40 -2.34 16 17 C -0.15 -3.59 8.62 -38.88 -0.34 -3.93 16 18 C 0.15 3.85 5.49 -106.53 -0.59 3.27 16 19 C -0.42 -10.97 7.78 -37.81 -0.29 -11.27 16 20 H 0.11 2.97 5.72 -52.49 -0.30 2.67 16 21 C 0.07 1.70 5.24 -17.30 -0.09 1.61 16 22 N -0.78 -19.38 11.23 55.57 0.62 -18.76 16 23 Si 0.92 18.54 29.57 -169.99 -5.03 13.52 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.11 6.74 -51.93 -0.35 0.76 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.22 1.97 8.06 -52.48 -0.42 1.54 16 35 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.09 1.20 7.13 -51.92 -0.37 0.83 16 37 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.12 2.92 6.68 -52.49 -0.35 2.57 16 41 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -29.94 354.75 -9.31 -39.25 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.13 Total: 6.51 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.55 Total: -7.91 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.69 Total: -36.43 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.64 Total: -20.28 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.94 -9.31 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801218815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds