Wall clock time and date at job start Tue Mar 31 2020 12:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46626 * 2 1 4 4 N 1.46496 * 109.46882 * 119.99881 * 2 1 3 5 5 N 1.40445 * 126.82272 * 299.97343 * 4 2 1 6 6 C 1.30720 * 106.78941 * 180.02562 * 5 4 2 7 7 N 1.33235 * 108.94625 * 0.24450 * 6 5 4 8 8 C 1.30829 * 109.83023 * 359.58942 * 7 6 5 9 9 C 1.50704 * 125.95933 * 180.19429 * 8 7 6 10 10 O 1.45201 * 109.47219 * 270.24263 * 9 8 7 11 11 C 1.34805 * 117.00385 * 180.02562 * 10 9 8 12 12 O 1.21528 * 119.99680 * 0.02562 * 11 10 9 13 13 C 1.47279 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.39295 * 120.29149 * 357.17372 * 13 11 10 15 15 C 1.38196 * 120.08566 * 179.97438 * 14 13 11 16 16 C 1.38838 * 120.68895 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.57964 * 359.97438 * 16 15 14 18 18 C 1.40708 * 119.88687 * 359.75103 * 17 16 15 19 19 C 1.40864 * 120.33540 * 180.24967 * 18 17 16 20 20 H 1.07995 * 120.00357 * 214.91425 * 19 18 17 21 21 C 1.40299 * 119.99354 * 34.92010 * 19 18 17 22 22 N 1.30607 * 120.00482 * 9.90684 * 21 19 18 23 23 Si 1.86807 * 119.99600 * 189.91059 * 21 19 18 24 24 H 1.48499 * 109.46874 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46846 * 119.99655 * 23 21 19 26 26 H 1.48498 * 109.46728 * 239.99711 * 23 21 19 27 27 H 1.09005 * 109.47034 * 60.00055 * 1 2 3 28 28 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47175 * 300.00050 * 1 2 3 30 30 H 1.08996 * 109.47175 * 239.99950 * 2 1 3 31 31 H 1.08997 * 109.46642 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47226 * 299.99607 * 3 2 1 33 33 H 1.08996 * 109.47384 * 60.00078 * 3 2 1 34 34 H 1.08004 * 125.52563 * 179.97438 * 6 5 4 35 35 H 1.08992 * 109.47297 * 30.24643 * 9 8 7 36 36 H 1.09008 * 109.46923 * 150.24874 * 9 8 7 37 37 H 1.07998 * 119.95248 * 359.95778 * 14 13 11 38 38 H 1.07998 * 119.65767 * 180.02562 * 15 14 13 39 39 H 1.07995 * 119.71185 * 179.97438 * 16 15 14 40 40 H 1.08001 * 120.06120 * 179.97438 * 17 16 15 41 41 H 0.97005 * 120.00151 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7693 -0.3375 2.5325 6 6 2.3900 -1.2148 3.2768 7 7 3.0137 -2.0880 2.4871 8 6 2.7942 -1.7877 1.2328 9 6 3.3232 -2.5378 0.0375 10 8 4.6108 -1.9883 -0.3478 11 6 5.2239 -2.5511 -1.4082 12 8 4.6965 -3.4755 -1.9949 13 6 6.5329 -2.0458 -1.8557 14 6 7.1158 -0.9491 -1.2248 15 6 8.3444 -0.4788 -1.6479 16 6 9.0118 -1.0882 -2.7018 17 6 8.4618 -2.1733 -3.3449 18 6 7.2146 -2.6758 -2.9303 19 6 6.6452 -3.7894 -3.5785 20 1 5.5744 -3.8521 -3.7038 21 6 7.4694 -4.8170 -4.0613 22 7 8.7362 -4.8415 -3.7445 23 14 6.7548 -6.1503 -5.1573 24 1 5.3064 -5.8966 -5.3652 25 1 7.4527 -6.1403 -6.4681 26 1 6.9371 -7.4740 -4.5095 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 2.3996 -1.2270 4.3567 35 1 3.4392 -3.5913 0.2919 36 1 2.6232 -2.4393 -0.7922 37 1 6.6066 -0.4657 -0.4042 38 1 8.7902 0.3717 -1.1535 39 1 9.9711 -0.7074 -3.0197 40 1 8.9881 -2.6406 -4.1640 41 1 9.3061 -5.5519 -4.0786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801218815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:39 Heat of formation + Delta-G solvation = 7.104221 kcal Electronic energy + Delta-G solvation = -25762.692175 eV Core-core repulsion = 22029.851652 eV Total energy + Delta-G solvation = -3732.840523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.29280 -41.21956 -39.12342 -37.31124 -37.09179 -35.62649 -33.26121 -32.08350 -31.93697 -31.48842 -28.68881 -28.28872 -27.35569 -24.66909 -24.38940 -22.94153 -22.28395 -21.54982 -21.16208 -19.41207 -18.55269 -18.44867 -17.49951 -17.21048 -16.99941 -16.63441 -16.05235 -15.84061 -15.56032 -15.27015 -15.16921 -14.61416 -14.46918 -14.25212 -14.20453 -13.78887 -13.56958 -13.48125 -13.20905 -13.03740 -12.89648 -12.86999 -12.55787 -12.52085 -12.36716 -12.09521 -11.99278 -11.74492 -11.55214 -11.18772 -11.13469 -10.94160 -10.80105 -10.59603 -9.53359 -9.33201 -8.75576 -6.47398 0.23713 0.29803 0.98014 1.11661 1.37187 1.49365 1.52519 1.60207 1.98347 2.17741 2.19982 2.71441 2.94534 3.29149 3.56476 3.62519 3.82706 3.85324 3.93544 4.07092 4.26622 4.34050 4.39104 4.57643 4.60260 4.61840 4.72657 4.77779 4.82435 5.04620 5.07185 5.14722 5.15938 5.22181 5.25440 5.38966 5.40814 5.57739 5.65530 5.77735 5.98918 6.05118 6.26940 6.62607 6.77055 6.85811 6.95898 7.16358 8.22088 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003650 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.027755 B = 7669.089844 C = 8375.147242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.153 4.153 4 N -0.351 5.351 5 N -0.320 5.320 6 C 0.193 3.807 7 N -0.553 5.553 8 C 0.267 3.733 9 C 0.148 3.852 10 O -0.361 6.361 11 C 0.512 3.488 12 O -0.534 6.534 13 C -0.273 4.273 14 C -0.039 4.039 15 C -0.238 4.238 16 C -0.082 4.082 17 C -0.172 4.172 18 C 0.123 3.877 19 C -0.456 4.456 20 H 0.095 0.905 21 C 0.034 3.966 22 N -0.811 5.811 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.254 1.254 26 H -0.267 1.267 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 8.229 4.750 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.144 5.144 5 N -0.148 5.148 6 C -0.109 4.109 7 N -0.283 5.283 8 C -0.009 4.009 9 C 0.071 3.929 10 O -0.278 6.278 11 C 0.364 3.636 12 O -0.427 6.427 13 C -0.276 4.276 14 C -0.057 4.057 15 C -0.257 4.257 16 C -0.101 4.101 17 C -0.191 4.191 18 C 0.120 3.880 19 C -0.484 4.484 20 H 0.113 0.887 21 C -0.183 4.183 22 N -0.436 5.436 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.178 1.178 26 H -0.192 1.192 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.546 8.202 4.874 14.978 hybrid contribution 0.002 -0.954 -0.358 1.019 sum -11.544 7.247 4.517 14.359 Atomic orbital electron populations 1.22097 0.90907 1.03176 1.04684 1.21921 0.97369 0.94951 0.82509 1.22080 1.01134 0.93260 1.04600 1.50848 1.36748 1.20101 1.06743 1.77922 1.26018 1.24089 0.86819 1.26693 0.93081 0.88521 1.02624 1.70453 1.26585 1.31112 1.00106 1.23580 0.93750 0.89174 0.94427 1.20971 0.83818 0.96783 0.91329 1.86596 1.33628 1.59669 1.47947 1.21267 0.85626 0.80175 0.76561 1.90710 1.66205 1.29517 1.56222 1.19004 0.96405 1.07195 1.04982 1.21068 0.94845 0.93472 0.96316 1.20799 0.97209 1.04829 1.02853 1.21235 0.98768 0.94828 0.95254 1.21287 0.97630 0.97692 1.02463 1.17794 0.91358 0.90970 0.87896 1.20425 0.96423 1.02316 1.29246 0.88689 1.26892 0.94533 1.01424 0.95405 1.69725 1.06818 1.31933 1.35137 0.85155 0.79601 0.76843 0.78175 1.18719 1.17821 1.19185 0.87625 0.92388 0.91543 0.87210 0.93440 0.87646 0.91450 0.73075 0.88285 0.87542 0.86309 0.85149 0.85587 0.87503 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.47 71.98 0.68 -1.58 16 2 C 0.13 2.66 3.68 44.99 0.17 2.83 16 3 C -0.15 -2.76 9.47 71.98 0.68 -2.08 16 4 N -0.35 -9.26 3.28 -318.04 -1.04 -10.30 16 5 N -0.32 -8.44 12.60 -61.24 -0.77 -9.21 16 6 C 0.19 4.88 13.03 180.76 2.36 7.24 16 7 N -0.55 -17.45 11.19 -191.77 -2.15 -19.59 16 8 C 0.27 8.18 7.62 138.23 1.05 9.23 16 9 C 0.15 4.76 5.63 71.24 0.40 5.16 16 10 O -0.36 -14.26 9.46 -57.17 -0.54 -14.80 16 11 C 0.51 23.91 7.86 70.20 0.55 24.46 16 12 O -0.53 -26.87 13.30 19.74 0.26 -26.60 16 13 C -0.27 -13.43 5.92 -19.71 -0.12 -13.55 16 14 C -0.04 -1.66 9.60 22.51 0.22 -1.45 16 15 C -0.24 -9.49 10.03 22.40 0.22 -9.27 16 16 C -0.08 -3.47 10.01 22.26 0.22 -3.25 16 17 C -0.17 -8.47 8.62 22.72 0.20 -8.28 16 18 C 0.12 6.55 5.49 -21.10 -0.12 6.44 16 19 C -0.46 -24.76 7.78 23.41 0.18 -24.58 16 20 H 0.10 5.32 5.72 -2.91 -0.02 5.31 16 21 C 0.03 1.72 5.24 85.38 0.45 2.17 16 22 N -0.81 -41.02 11.23 21.88 0.25 -40.78 16 23 Si 0.98 38.68 29.57 68.60 2.03 40.71 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 H 0.11 1.03 8.14 -2.38 -0.02 1.02 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 2.14 6.74 -2.39 -0.02 2.12 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.25 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.11 2.95 7.13 -2.38 -0.02 2.93 16 37 H 0.12 4.60 7.60 -2.91 -0.02 4.58 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.42 6.68 -2.91 -0.02 5.40 16 41 H 0.29 13.28 8.29 -92.70 -0.77 12.52 16 Total: -1.00 -65.92 354.75 6.24 -59.68 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.05 Total: 27.41 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 7.15 Total: -6.51 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.71 Total: -79.88 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.28 Total: -41.41 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -65.92 6.24 -59.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801218815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.786 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds