Wall clock time and date at job start Tue Mar 31 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00016 * 2 1 4 4 N 1.46502 * 109.46961 * 124.99921 * 3 2 1 5 5 C 1.46498 * 120.00016 * 263.21552 * 4 3 2 6 6 C 1.50693 * 109.47100 * 270.00162 * 5 4 3 7 7 H 1.07998 * 120.00231 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99984 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00009 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00004 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.46807 * 90.00016 * 10 8 6 12 12 H 1.48494 * 109.47295 * 209.99862 * 10 8 6 13 13 H 1.48497 * 109.47033 * 329.99966 * 10 8 6 14 14 C 1.34778 * 120.00108 * 83.21843 * 4 3 2 15 15 O 1.21694 * 119.99966 * 183.88141 * 14 4 3 16 16 C 1.46656 * 119.99976 * 3.87561 * 14 4 3 17 17 C 1.36543 * 125.98786 * 173.42613 * 16 14 4 18 18 C 1.40362 * 106.70885 * 179.76805 * 17 16 14 19 19 C 1.35133 * 107.11496 * 0.41084 * 18 17 16 20 20 C 1.50702 * 125.61698 * 179.85001 * 19 18 17 21 21 N 1.46497 * 109.47343 * 89.71785 * 20 19 18 22 22 C 1.34943 * 126.04032 * 124.99909 * 21 20 19 23 23 C 1.35321 * 107.74668 * 179.77167 * 22 21 20 24 24 C 1.39867 * 107.92007 * 0.22532 * 23 22 21 25 25 N 1.30842 * 108.20233 * 0.02562 * 24 23 22 26 26 O 1.33935 * 108.76579 * 359.58101 * 19 18 17 27 27 H 1.08004 * 119.99914 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.99915 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00088 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47097 * 4.99697 * 3 2 1 31 31 H 1.08998 * 109.46649 * 244.99522 * 3 2 1 32 32 H 1.09006 * 109.47286 * 30.00129 * 5 4 3 33 33 H 1.08995 * 109.47352 * 149.99846 * 5 4 3 34 34 H 0.97009 * 119.99980 * 179.97438 * 9 8 6 35 35 H 1.07996 * 126.64692 * 0.02562 * 17 16 14 36 36 H 1.08002 * 126.44507 * 180.25707 * 18 17 16 37 37 H 1.08997 * 109.47429 * 329.71260 * 20 19 18 38 38 H 1.09000 * 109.46677 * 209.71308 * 20 19 18 39 39 H 1.07999 * 126.12750 * 0.03553 * 22 21 20 40 40 H 1.07996 * 126.03820 * 180.20573 * 23 22 21 41 41 H 1.07996 * 125.90052 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.6110 1.9980 2.3788 6 6 3.0303 3.4444 2.3251 7 1 3.5314 3.8292 1.4492 8 6 2.7732 4.2769 3.3937 9 7 3.1396 5.5391 3.3470 10 14 1.9059 3.6116 4.9085 11 1 2.9139 3.0979 5.8704 12 1 1.1212 4.6985 5.5471 13 1 0.9931 2.5093 4.5121 14 6 4.2018 0.7438 1.0248 15 8 4.9463 0.7042 1.9866 16 6 4.6189 0.1514 -0.2503 17 6 5.8535 -0.3592 -0.5320 18 6 5.8066 -0.8210 -1.8567 19 6 4.5639 -0.5668 -2.3227 20 6 4.0618 -0.8915 -3.7060 21 7 3.4856 -2.2384 -3.7127 22 6 2.2401 -2.5671 -4.1147 23 6 2.0997 -3.9052 -3.9703 24 6 3.2989 -4.4109 -3.4579 25 7 4.1292 -3.4122 -3.2998 26 8 3.8501 0.0159 -1.3507 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 1.5301 1.9375 2.5062 33 1 3.1037 1.5079 3.2185 34 1 2.9584 6.1249 4.0987 35 1 6.7007 -0.4034 0.1363 36 1 6.6129 -1.2890 -2.4019 37 1 4.8903 -0.8472 -4.4129 38 1 3.2989 -0.1685 -3.9945 39 1 1.4910 -1.8850 -4.4889 40 1 1.2175 -4.4809 -4.2084 41 1 3.5041 -5.4468 -3.2318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814134126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:21 Heat of formation + Delta-G solvation = 77.987839 kcal Electronic energy + Delta-G solvation = -25969.134380 eV Core-core repulsion = 22239.367601 eV Total energy + Delta-G solvation = -3729.766779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.87303 -41.91261 -40.65519 -37.54155 -35.25313 -35.03466 -34.06248 -33.87028 -31.62596 -30.87029 -30.00695 -27.65472 -26.98847 -24.95198 -22.92129 -22.80782 -21.88653 -21.54337 -21.33470 -20.60505 -19.15665 -18.69812 -18.35310 -17.51093 -17.32528 -16.92136 -16.32245 -15.96238 -15.93864 -15.69348 -15.02613 -14.91600 -14.58915 -14.44537 -14.39557 -14.16206 -13.99581 -13.95525 -13.61417 -13.59002 -13.20498 -13.00576 -12.75232 -12.56294 -12.32415 -12.01519 -11.78575 -11.55029 -11.30602 -11.10735 -10.86570 -10.41075 -10.38971 -9.90676 -9.55564 -9.45760 -8.37436 -6.44059 -0.13835 0.93528 1.13372 1.22366 1.32261 1.35800 1.44224 1.48850 1.88780 2.02171 2.04869 2.28326 2.30314 2.96353 3.27012 3.65548 3.74015 3.84537 3.98041 4.10104 4.11584 4.25511 4.30961 4.34576 4.51927 4.60528 4.64605 4.73105 4.77863 4.84115 4.90682 4.95623 5.00180 5.20549 5.29218 5.34270 5.39117 5.64239 5.75834 5.79336 5.81137 6.14050 6.17097 6.39158 6.56854 6.81081 6.98304 7.21238 8.79223 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.003543 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.672994 B = 7900.967777 C = 8565.174591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.177 4.177 3 C 0.133 3.867 4 N -0.583 5.583 5 C 0.227 3.773 6 C -0.542 4.542 7 H 0.031 0.969 8 C 0.017 3.983 9 N -0.941 5.941 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.271 1.271 13 H -0.239 1.239 14 C 0.582 3.418 15 O -0.569 6.569 16 C -0.076 4.076 17 C -0.135 4.135 18 C -0.176 4.176 19 C -0.016 4.016 20 C 0.216 3.784 21 N -0.383 5.383 22 C 0.060 3.940 23 C -0.285 4.285 24 C 0.033 3.967 25 N -0.331 5.331 26 O -0.147 6.147 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.270 0.730 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.209 0.791 40 H 0.166 0.834 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -18.056 -19.729 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C 0.012 3.988 4 N -0.311 5.311 5 C 0.105 3.895 6 C -0.580 4.580 7 H 0.049 0.951 8 C -0.182 4.182 9 N -0.580 5.580 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.196 1.196 13 H -0.162 1.162 14 C 0.371 3.629 15 O -0.451 6.451 16 C -0.129 4.129 17 C -0.155 4.155 18 C -0.196 4.196 19 C -0.069 4.069 20 C 0.096 3.904 21 N -0.166 5.166 22 C -0.085 4.085 23 C -0.314 4.314 24 C -0.153 4.153 25 N -0.152 5.152 26 O -0.043 6.043 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.175 0.825 36 H 0.197 0.803 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.226 0.774 40 H 0.184 0.816 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.441 -17.276 -18.781 25.902 hybrid contribution -0.395 0.008 0.899 0.982 sum -4.836 -17.268 -17.882 25.325 Atomic orbital electron populations 1.24062 0.94764 1.03318 0.97326 1.23035 0.96759 0.96998 1.02780 1.20978 0.92401 0.96913 0.88505 1.47925 1.14672 1.52192 1.16266 1.19449 0.96380 0.90909 0.82755 1.21472 1.39210 0.94207 1.03135 0.95103 1.25797 0.95954 0.94767 1.01661 1.70036 1.48319 1.06411 1.33254 0.85753 0.79409 0.79257 0.78829 1.20063 1.19614 1.16170 1.17118 0.81966 0.78282 0.85512 1.90795 1.54169 1.61672 1.38482 1.21833 0.92744 1.10618 0.87662 1.22162 0.96698 0.98778 0.97901 1.21793 0.98866 1.04617 0.94290 1.23304 0.91621 0.99618 0.92372 1.20396 1.03251 0.79447 0.87355 1.48830 1.11096 1.06360 1.50325 1.23250 0.88002 0.98037 0.99234 1.21878 1.01190 0.94476 1.13900 1.24392 0.92805 0.99557 0.98520 1.77375 1.23222 0.91624 1.22998 1.84267 1.39394 1.61548 1.19099 0.87268 0.86371 0.88984 0.89084 0.88650 0.92718 0.95831 0.92046 0.82514 0.80265 0.83826 0.83374 0.77442 0.81611 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 14.32 67.78 0.97 -2.51 16 2 C -0.18 -4.95 8.95 25.65 0.23 -4.72 16 3 C 0.13 4.51 5.45 85.63 0.47 4.98 16 4 N -0.58 -25.73 2.46 -835.26 -2.05 -27.79 16 5 C 0.23 11.39 4.23 85.63 0.36 11.75 16 6 C -0.54 -32.23 9.94 25.60 0.25 -31.98 16 7 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 8 C 0.02 1.00 5.47 84.66 0.46 1.47 16 9 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 10 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 14 C 0.58 26.69 7.57 86.44 0.65 27.34 16 15 O -0.57 -30.53 16.43 -4.33 -0.07 -30.60 16 16 C -0.08 -2.77 6.74 24.07 0.16 -2.61 16 17 C -0.13 -4.30 10.63 22.39 0.24 -4.07 16 18 C -0.18 -4.26 10.77 22.07 0.24 -4.02 16 19 C -0.02 -0.37 6.74 24.97 0.17 -0.20 16 20 C 0.22 2.80 7.04 85.63 0.60 3.40 16 21 N -0.38 -6.52 3.67 -351.80 -1.29 -7.81 16 22 C 0.06 0.78 11.45 83.54 0.96 1.73 16 23 C -0.29 -4.07 10.80 21.99 0.24 -3.84 16 24 C 0.03 0.59 12.03 85.23 1.02 1.62 16 25 N -0.33 -7.33 12.40 -57.02 -0.71 -8.04 16 26 O -0.15 -4.27 6.44 -5.08 -0.03 -4.30 16 27 H 0.11 2.25 7.84 -2.91 -0.02 2.22 16 28 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.09 2.78 7.83 -2.91 -0.02 2.76 16 30 H 0.09 3.06 7.67 -2.39 -0.02 3.04 16 31 H 0.10 3.01 5.42 -2.39 -0.01 3.00 16 32 H 0.05 2.51 7.13 -2.38 -0.02 2.50 16 33 H 0.02 1.27 6.80 -2.39 -0.02 1.25 16 34 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 35 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.15 0.97 8.07 -2.39 -0.02 0.95 16 39 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.20 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -82.90 359.32 6.04 -76.86 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.98 Total: 16.06 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.03 Total: -1.65 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.75 Total: -102.62 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.10 Total: -34.90 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -82.90 6.04 -76.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.848 kcal (2) G-P(sol) polarization free energy of solvation -82.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds