Wall clock time and date at job start Tue Mar 31 2020 11:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.50698 * 109.46961 * 240.00295 * 2 1 3 5 5 H 1.07997 * 120.00220 * 240.00120 * 4 2 1 6 6 C 1.37886 * 120.00043 * 59.99824 * 4 2 1 7 7 N 1.31515 * 119.99751 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46930 * 90.00027 * 8 6 4 10 10 H 1.48501 * 109.46542 * 209.99880 * 8 6 4 11 11 H 1.48493 * 109.47196 * 330.00161 * 8 6 4 12 12 C 1.52991 * 109.47063 * 120.00408 * 2 1 3 13 13 N 1.46501 * 109.47521 * 299.99665 * 12 2 1 14 14 C 1.34771 * 120.00513 * 180.02562 * 13 12 2 15 15 O 1.21595 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.47496 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.33520 * 119.92984 * 0.20346 * 16 14 13 18 18 N 1.28380 * 123.16591 * 180.25132 * 17 16 14 19 19 C 1.34031 * 121.92786 * 359.78065 * 18 17 16 20 20 C 1.40253 * 121.55811 * 179.97438 * 19 18 17 21 21 C 1.36307 * 119.68325 * 180.02562 * 20 19 18 22 22 C 1.39206 * 121.10654 * 359.97438 * 21 20 19 23 23 C 1.36395 * 120.81508 * 359.97438 * 22 21 20 24 24 C 1.39985 * 119.49199 * 0.02562 * 23 22 21 25 25 C 1.39862 * 119.92790 * 179.97438 * 16 14 13 26 26 O 1.35270 * 121.38658 * 0.02562 * 25 16 14 27 27 H 1.09000 * 109.47044 * 300.00051 * 1 2 3 28 28 H 1.09004 * 109.47337 * 59.99818 * 1 2 3 29 29 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47083 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47159 * 300.00291 * 3 2 1 32 32 H 1.09000 * 109.47198 * 60.00043 * 3 2 1 33 33 H 0.96998 * 119.99188 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47340 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47381 * 59.99831 * 12 2 1 36 36 H 0.97008 * 119.99399 * 0.02562 * 13 12 2 37 37 H 1.07995 * 120.15536 * 0.06483 * 20 19 18 38 38 H 1.08003 * 119.44301 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.59166 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.25218 * 179.97438 * 23 22 21 41 41 H 0.96700 * 114.00293 * 269.72162 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4119 10 1 2.4864 -0.1411 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5768 -1.4797 3.7810 16 6 1.3857 0.2040 4.8738 17 7 0.6140 1.2865 4.7497 18 7 0.1558 1.9413 5.7544 19 6 0.4193 1.5777 7.0172 20 6 -0.0849 2.2991 8.1092 21 6 0.2076 1.8955 9.3779 22 6 1.0005 0.7754 9.6114 23 6 1.5071 0.0493 8.5739 24 6 1.2253 0.4374 7.2588 25 6 1.7245 -0.2752 6.1433 26 8 2.5011 -1.3719 6.2982 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7088 1.1615 -3.4844 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9938 0.7577 2.3564 37 1 -0.7024 3.1698 7.9456 38 1 -0.1830 2.4537 10.2159 39 1 1.2165 0.4773 10.6267 40 1 2.1216 -0.8180 8.7656 41 1 2.0058 -2.2010 6.3472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837888023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:23 Heat of formation + Delta-G solvation = -0.562626 kcal Electronic energy + Delta-G solvation = -25619.993495 eV Core-core repulsion = 21886.820513 eV Total energy + Delta-G solvation = -3733.172982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.74875 -39.37623 -38.09224 -37.94556 -36.27129 -33.38471 -32.80097 -31.93195 -30.91797 -30.40612 -26.13899 -25.65493 -25.39214 -25.27489 -24.23030 -22.66524 -21.07008 -19.41030 -18.90546 -18.83568 -18.28518 -16.95216 -16.33333 -15.79938 -15.66373 -15.19669 -14.94745 -14.78834 -14.59910 -14.50209 -14.36050 -13.46204 -12.94904 -12.88587 -12.80247 -12.53644 -12.52670 -12.16096 -12.10395 -11.33940 -11.22918 -11.12110 -10.84016 -10.67886 -10.66253 -10.33178 -10.17040 -10.06862 -9.76009 -9.69892 -9.58144 -9.26231 -8.74435 -8.69630 -8.42569 -8.28657 -5.98061 -4.08453 -0.44537 0.07940 1.26008 2.16190 3.16046 3.21612 3.30789 3.35761 3.37908 3.42254 3.65648 3.83435 3.95971 4.21690 4.36043 4.42580 4.56954 4.66520 4.78871 5.01920 5.17541 5.28436 5.41998 5.43559 5.67211 5.78652 5.86749 6.21651 6.24030 6.32974 6.55893 6.76513 6.92659 6.96714 7.03717 7.07543 7.10628 7.40288 7.61804 7.73355 7.97438 8.06349 8.17998 8.32548 8.41586 8.57938 8.91965 9.57073 11.03316 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.002804 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.681495 B = 9984.472889 C =10659.516203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.692 5.692 14 C 0.563 3.437 15 O -0.531 6.531 16 C -0.031 4.031 17 N -0.169 5.169 18 N -0.210 5.210 19 C 0.084 3.916 20 C -0.081 4.081 21 C -0.090 4.090 22 C -0.103 4.103 23 C -0.086 4.086 24 C -0.106 4.106 25 C 0.203 3.797 26 O -0.455 6.455 27 H 0.009 0.991 28 H 0.086 0.914 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.009 0.991 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 1.095 24.879 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.342 5.342 14 C 0.345 3.655 15 O -0.408 6.408 16 C -0.166 4.166 17 N -0.028 5.028 18 N -0.068 5.068 19 C -0.043 4.043 20 C -0.102 4.102 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.105 4.105 24 C -0.115 4.115 25 C 0.143 3.857 26 O -0.266 6.266 27 H 0.028 0.972 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.247 0.753 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.646 1.801 23.739 23.954 hybrid contribution 0.439 -1.362 0.095 1.434 sum -2.207 0.439 23.834 23.940 Atomic orbital electron populations 1.21846 0.97645 0.99170 1.00386 1.18358 0.92919 0.92839 0.90308 1.21846 0.98551 0.98300 1.00379 1.20972 1.31550 1.12098 0.89859 0.92423 1.24884 0.94895 0.94909 0.98825 1.69815 1.36622 1.22651 1.23206 0.86572 0.79279 0.79370 0.82641 1.20746 1.21278 1.19935 1.21849 0.98384 0.95872 0.83124 1.46242 1.51092 1.31612 1.05236 1.17319 0.81387 0.84218 0.82565 1.90805 1.38050 1.25723 1.86235 1.23404 1.00349 0.97682 0.95160 1.73251 1.03485 1.02053 1.23999 1.73870 1.16074 1.21391 0.95433 1.20415 0.95907 0.93325 0.94614 1.20824 0.99296 0.99822 0.90300 1.21109 0.96641 0.96213 0.97116 1.21108 0.96571 0.94906 0.99695 1.20925 0.98941 1.00370 0.90248 1.19219 0.99463 0.97610 0.95180 1.19461 0.86490 0.89490 0.90272 1.84587 1.32517 1.15156 1.94340 0.97174 0.89516 0.95481 0.95454 0.89502 0.97183 0.92998 0.92307 0.92334 0.75345 0.83459 0.84404 0.84634 0.84044 0.73094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 2 C 0.06 1.34 0.50 -155.67 -0.08 1.27 16 3 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 4 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -23.95 9.35 55.43 0.52 -23.44 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.83 4.50 -4.05 -0.02 2.81 16 13 N -0.69 -13.44 4.95 -61.37 -0.30 -13.74 16 14 C 0.56 10.53 7.79 -12.49 -0.10 10.44 16 15 O -0.53 -10.88 15.21 -16.33 -0.25 -11.12 16 16 C -0.03 -0.50 6.83 -82.75 -0.57 -1.06 16 17 N -0.17 -2.74 10.68 33.32 0.36 -2.38 16 18 N -0.21 -3.06 11.54 32.20 0.37 -2.69 16 19 C 0.08 1.00 6.68 -84.82 -0.57 0.43 16 20 C -0.08 -0.68 10.00 -39.52 -0.40 -1.07 16 21 C -0.09 -0.53 9.94 -39.92 -0.40 -0.93 16 22 C -0.10 -0.60 9.96 -39.89 -0.40 -1.00 16 23 C -0.09 -0.68 9.62 -39.59 -0.38 -1.06 16 24 C -0.11 -1.20 5.75 -106.69 -0.61 -1.82 16 25 C 0.20 2.70 6.80 -37.75 -0.26 2.45 16 26 O -0.46 -5.46 11.07 -39.11 -0.43 -5.89 16 27 H 0.01 0.20 6.86 -51.93 -0.36 -0.16 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 32 H 0.01 0.20 6.86 -51.93 -0.36 -0.16 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.41 7.75 5.49 -40.82 -0.22 7.52 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 39 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 0.87 7.74 -52.48 -0.41 0.47 16 41 H 0.41 3.09 9.06 45.56 0.41 3.50 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -31.46 342.32 -7.20 -38.66 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.06 Total: 6.75 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.53 Total: -7.20 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.94 Total: -42.26 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.68 Total: -17.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.46 -7.20 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.099 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds