Wall clock time and date at job start Tue Mar 31 2020 11:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.50698 * 109.46961 * 240.00295 * 2 1 3 5 5 H 1.07997 * 120.00220 * 240.00120 * 4 2 1 6 6 C 1.37886 * 120.00043 * 59.99824 * 4 2 1 7 7 N 1.31515 * 119.99751 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99762 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46930 * 90.00027 * 8 6 4 10 10 H 1.48501 * 109.46542 * 209.99880 * 8 6 4 11 11 H 1.48493 * 109.47196 * 330.00161 * 8 6 4 12 12 C 1.52991 * 109.47063 * 120.00408 * 2 1 3 13 13 N 1.46501 * 109.47521 * 299.99665 * 12 2 1 14 14 C 1.34771 * 120.00513 * 180.02562 * 13 12 2 15 15 O 1.21595 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.47496 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.33520 * 119.92984 * 0.20346 * 16 14 13 18 18 N 1.28380 * 123.16591 * 180.25132 * 17 16 14 19 19 C 1.34031 * 121.92786 * 359.78065 * 18 17 16 20 20 C 1.40253 * 121.55811 * 179.97438 * 19 18 17 21 21 C 1.36307 * 119.68325 * 180.02562 * 20 19 18 22 22 C 1.39206 * 121.10654 * 359.97438 * 21 20 19 23 23 C 1.36395 * 120.81508 * 359.97438 * 22 21 20 24 24 C 1.39985 * 119.49199 * 0.02562 * 23 22 21 25 25 C 1.39862 * 119.92790 * 179.97438 * 16 14 13 26 26 O 1.35270 * 121.38658 * 0.02562 * 25 16 14 27 27 H 1.09000 * 109.47044 * 300.00051 * 1 2 3 28 28 H 1.09004 * 109.47337 * 59.99818 * 1 2 3 29 29 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47083 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47159 * 300.00291 * 3 2 1 32 32 H 1.09000 * 109.47198 * 60.00043 * 3 2 1 33 33 H 0.96998 * 119.99188 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47340 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47381 * 59.99831 * 12 2 1 36 36 H 0.97008 * 119.99399 * 0.02562 * 13 12 2 37 37 H 1.07995 * 120.15536 * 0.06483 * 20 19 18 38 38 H 1.08003 * 119.44301 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.59166 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.25218 * 179.97438 * 23 22 21 41 41 H 0.96700 * 114.00293 * 269.72162 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4119 10 1 2.4864 -0.1411 -5.1123 11 1 3.6291 -1.7582 -3.7124 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5768 -1.4797 3.7810 16 6 1.3857 0.2040 4.8738 17 7 0.6140 1.2865 4.7497 18 7 0.1558 1.9413 5.7544 19 6 0.4193 1.5777 7.0172 20 6 -0.0849 2.2991 8.1092 21 6 0.2076 1.8955 9.3779 22 6 1.0005 0.7754 9.6114 23 6 1.5071 0.0493 8.5739 24 6 1.2253 0.4374 7.2588 25 6 1.7245 -0.2752 6.1433 26 8 2.5011 -1.3719 6.2982 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7088 1.1615 -3.4844 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9938 0.7577 2.3564 37 1 -0.7024 3.1698 7.9456 38 1 -0.1830 2.4537 10.2159 39 1 1.2165 0.4773 10.6267 40 1 2.1216 -0.8180 8.7656 41 1 2.0058 -2.2010 6.3472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837888023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:22 Heat of formation + Delta-G solvation = -21.970299 kcal Electronic energy + Delta-G solvation = -25620.921801 eV Core-core repulsion = 21886.820513 eV Total energy + Delta-G solvation = -3734.101289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.67116 -40.72550 -39.08428 -38.82918 -38.01943 -35.06979 -33.77332 -32.94925 -32.39855 -31.39541 -27.68198 -27.58934 -27.13357 -26.25164 -25.50707 -23.43559 -22.35643 -20.65418 -20.25998 -19.98870 -19.38607 -18.03315 -17.72958 -17.21342 -16.69570 -16.63458 -16.45874 -16.00850 -15.70433 -15.53360 -15.13921 -14.94581 -14.77169 -14.54840 -14.03316 -13.62251 -13.44991 -13.20310 -13.16427 -13.11941 -12.87378 -12.69781 -12.59483 -12.27401 -12.17183 -12.07915 -11.57090 -11.50318 -11.32106 -11.04375 -10.94656 -10.70949 -10.50819 -10.40309 -10.03522 -9.39846 -8.01413 -6.18067 -1.27333 -0.80712 0.53893 1.22131 1.43843 1.45932 1.54753 1.98817 2.06237 2.41727 2.47023 2.72151 2.78501 3.13642 3.21981 3.39710 3.62595 3.67745 4.04627 4.14452 4.26844 4.35319 4.43893 4.47840 4.63017 4.69175 4.88939 4.94119 4.98759 5.04366 5.09917 5.17180 5.22561 5.29688 5.30551 5.51241 5.64714 5.67022 5.68215 6.10690 6.19264 6.34163 6.41588 6.47167 6.85751 7.05482 7.33486 7.49632 8.98068 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.002804 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.681495 B = 9984.472889 C =10659.516203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.694 5.694 14 C 0.567 3.433 15 O -0.556 6.556 16 C -0.065 4.065 17 N -0.196 5.196 18 N -0.230 5.230 19 C 0.066 3.934 20 C -0.098 4.098 21 C -0.065 4.065 22 C -0.082 4.082 23 C -0.096 4.096 24 C -0.113 4.113 25 C 0.209 3.791 26 O -0.462 6.462 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.411 0.589 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 1.312 28.700 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.344 5.344 14 C 0.351 3.649 15 O -0.434 6.434 16 C -0.200 4.200 17 N -0.056 5.056 18 N -0.088 5.088 19 C -0.060 4.060 20 C -0.119 4.119 21 C -0.085 4.085 22 C -0.101 4.101 23 C -0.114 4.114 24 C -0.122 4.122 25 C 0.150 3.850 26 O -0.276 6.276 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.179 0.821 38 H 0.199 0.801 39 H 0.196 0.804 40 H 0.177 0.823 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.952 2.010 27.572 27.803 hybrid contribution 0.495 -1.386 -0.749 1.651 sum -2.457 0.624 26.823 26.943 Atomic orbital electron populations 1.21685 0.97282 0.98791 1.00195 1.18350 0.93170 0.92887 0.90437 1.21694 0.98006 0.98155 1.00181 1.21249 1.31826 1.12248 0.91273 0.93245 1.25514 0.95118 0.95575 1.01153 1.69931 1.37039 1.23345 1.23655 0.85691 0.78687 0.78400 0.79616 1.20375 1.20914 1.19900 1.21439 0.97417 0.95370 0.83506 1.46085 1.51574 1.31721 1.05033 1.17654 0.80488 0.83785 0.82979 1.90766 1.39113 1.26813 1.86752 1.22959 1.03119 0.99096 0.94800 1.73120 1.04509 1.02705 1.25260 1.73728 1.16741 1.21773 0.96566 1.20856 0.96539 0.94136 0.94467 1.21137 1.00054 1.00391 0.90318 1.21679 0.94253 0.95455 0.97121 1.21685 0.94004 0.93432 1.01022 1.21235 0.99605 1.01529 0.89054 1.19389 0.99471 0.97298 0.96042 1.19519 0.85773 0.89666 0.90064 1.84529 1.33043 1.15823 1.94240 0.95216 0.91693 0.95884 0.96077 0.91626 0.95293 0.93004 0.93599 0.93189 0.75093 0.82134 0.80126 0.80417 0.82253 0.71110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.08 71.98 0.58 -5.23 16 2 C 0.05 2.56 0.50 -52.93 -0.03 2.53 16 3 C -0.12 -5.92 8.08 71.98 0.58 -5.34 16 4 C -0.53 -28.62 8.01 25.60 0.21 -28.42 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.41 5.15 84.66 0.44 1.84 16 7 N -0.90 -49.64 9.35 21.45 0.20 -49.44 16 8 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.58 4.50 86.38 0.39 6.97 16 13 N -0.69 -27.98 4.95 -466.32 -2.31 -30.28 16 14 C 0.57 22.06 7.79 86.68 0.68 22.73 16 15 O -0.56 -23.54 15.21 16.65 0.25 -23.28 16 16 C -0.06 -2.17 6.83 41.72 0.29 -1.89 16 17 N -0.20 -6.63 10.68 -48.51 -0.52 -7.15 16 18 N -0.23 -6.83 11.54 -52.03 -0.60 -7.43 16 19 C 0.07 1.51 6.68 40.16 0.27 1.78 16 20 C -0.10 -1.34 10.00 22.31 0.22 -1.12 16 21 C -0.07 -0.41 9.94 22.05 0.22 -0.19 16 22 C -0.08 -0.50 9.96 22.07 0.22 -0.28 16 23 C -0.10 -1.18 9.62 22.26 0.21 -0.96 16 24 C -0.11 -2.41 5.75 -21.20 -0.12 -2.53 16 25 C 0.21 5.58 6.80 23.46 0.16 5.74 16 26 O -0.46 -10.94 11.07 -64.88 -0.72 -11.65 16 27 H 0.03 1.25 6.86 -2.39 -0.02 1.24 16 28 H 0.06 3.40 6.07 -2.38 -0.01 3.38 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 3.46 6.07 -2.38 -0.01 3.44 16 32 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 33 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.41 16.13 5.49 -92.70 -0.51 15.62 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 39 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.16 1.37 7.74 -2.91 -0.02 1.34 16 41 H 0.42 6.27 9.06 -74.06 -0.67 5.60 16 Total: -1.00 -71.22 342.32 2.56 -68.67 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.08 Total: 19.48 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.31 Total: -4.34 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.23 Total: -94.30 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.47 Total: -34.94 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.22 2.56 -68.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837888023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.695 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds