Wall clock time and date at job start Tue Mar 31 2020 11:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47361 * 306.70401 * 3 2 1 5 5 N 1.46502 * 109.47234 * 66.70632 * 3 2 1 6 6 C 1.34771 * 119.99755 * 274.99505 * 5 3 2 7 7 O 1.21580 * 120.00038 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00137 * 180.02562 * 6 5 3 9 9 C 1.39460 * 120.00209 * 175.12783 * 8 6 5 10 10 C 1.38643 * 119.65083 * 185.01789 * 9 8 6 11 11 C 1.40818 * 118.67869 * 179.75791 * 10 9 8 12 12 C 1.41545 * 121.00120 * 180.23761 * 11 10 9 13 13 H 1.07996 * 119.99880 * 203.99187 * 12 11 10 14 14 C 1.40031 * 119.99858 * 23.98733 * 12 11 10 15 15 N 1.30735 * 119.99845 * 16.80959 * 14 12 11 16 16 Si 1.86801 * 119.99738 * 196.80745 * 14 12 11 17 17 H 1.48498 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46920 * 120.00389 * 16 14 12 19 19 H 1.48501 * 109.47073 * 239.99918 * 16 14 12 20 20 C 1.41166 * 118.00281 * 0.49764 * 11 10 9 21 21 C 1.36590 * 119.12564 * 359.73682 * 20 11 10 22 22 N 1.32065 * 121.26279 * 0.02562 * 21 20 11 23 23 C 1.53008 * 109.46973 * 186.70160 * 3 2 1 24 24 H 1.09003 * 110.67138 * 62.03872 * 23 3 2 25 25 C 1.54993 * 110.61877 * 184.99961 * 23 3 2 26 26 C 1.54805 * 102.12659 * 155.54405 * 25 23 3 27 27 C 1.54103 * 104.18468 * 339.10350 * 26 25 23 28 28 O 1.43744 * 107.29461 * 357.96764 * 27 26 25 29 29 H 4.18734 * 15.03934 * 0.02562 * 4 2 1 30 30 H 0.97000 * 120.00136 * 95.00145 * 5 3 2 31 31 H 0.97001 * 120.00093 * 355.11897 * 8 6 5 32 32 H 1.08004 * 120.66242 * 359.97327 * 10 9 8 33 33 H 0.97006 * 119.99997 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.43519 * 179.71516 * 20 11 10 35 35 H 1.08007 * 119.36651 * 179.97438 * 21 20 11 36 36 H 1.08999 * 110.90658 * 37.32412 * 25 23 3 37 37 H 1.09002 * 110.90486 * 273.76064 * 25 23 3 38 38 H 1.09003 * 110.48854 * 97.77594 * 26 25 23 39 39 H 1.08995 * 110.49158 * 220.42935 * 26 25 23 40 40 H 1.08998 * 109.88267 * 117.39366 * 27 26 25 41 41 H 1.08999 * 109.87989 * 238.54312 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.6134 0.8239 5 7 3.1346 -0.5453 -1.2686 6 6 3.2640 -1.8778 -1.4234 7 8 2.9748 -2.6268 -0.5105 8 7 3.7139 -2.3802 -2.5903 9 6 3.9445 -3.7497 -2.7173 10 6 4.5054 -4.2456 -3.8842 11 6 4.7341 -5.6311 -3.9884 12 6 5.3088 -6.1894 -5.1553 13 1 5.1346 -7.2268 -5.3997 14 6 6.1032 -5.3966 -5.9927 15 7 6.5865 -4.2636 -5.5545 16 14 6.4723 -5.9579 -7.7357 17 1 5.8123 -7.2645 -7.9852 18 1 5.9577 -4.9518 -8.6991 19 1 7.9401 -6.1032 -7.9085 20 6 4.3679 -6.4473 -2.8964 21 6 3.8163 -5.8682 -1.7892 22 7 3.6203 -4.5639 -1.7235 23 6 3.1553 1.4336 0.1683 24 1 2.8325 1.8469 1.1239 25 6 4.6997 1.4818 0.0466 26 6 4.9457 2.9452 -0.3941 27 6 3.5952 3.3936 -0.9856 28 8 2.7061 2.2658 -0.9238 29 1 -1.0500 -0.0008 0.0002 30 1 3.3650 0.0522 -1.9971 31 1 3.8773 -1.7892 -3.3419 32 1 4.7651 -3.5819 -4.6958 33 1 7.1371 -3.7145 -6.1345 34 1 4.5215 -7.5157 -2.9362 35 1 3.5342 -6.4891 -0.9516 36 1 5.0521 0.7826 -0.7118 37 1 5.1721 1.2804 1.0081 38 1 5.2101 3.5628 0.4643 39 1 5.7276 2.9891 -1.1522 40 1 3.1892 4.2181 -0.3995 41 1 3.7291 3.7037 -2.0219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:19 Heat of formation + Delta-G solvation = 26.382865 kcal Electronic energy + Delta-G solvation = -25443.945595 eV Core-core repulsion = 21711.941057 eV Total energy + Delta-G solvation = -3732.004538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30159 -39.37856 -37.98110 -35.41134 -34.19720 -33.71249 -32.46748 -32.11471 -30.53060 -30.10742 -28.35340 -26.09885 -25.90301 -22.41950 -22.00231 -21.79186 -21.24097 -20.16346 -18.36757 -18.23786 -17.61339 -16.73626 -16.43138 -15.76444 -15.56231 -15.20030 -14.96419 -14.57373 -14.23429 -14.15909 -13.88431 -13.64093 -13.45436 -12.94786 -12.70256 -12.60223 -12.29950 -12.03354 -11.74399 -11.63590 -11.45582 -11.20306 -10.98872 -10.88470 -10.48682 -10.26819 -10.14844 -10.12032 -9.91362 -9.74804 -9.55222 -9.33782 -8.99081 -7.96801 -7.68911 -7.00159 -6.80050 -4.59702 2.53995 2.72303 2.80651 2.94460 3.02082 3.07643 3.26014 3.38853 3.53791 3.84930 3.86341 4.19406 4.32158 4.59490 4.61929 4.65840 4.70723 4.92899 4.96224 5.11063 5.35653 5.41025 5.54679 5.55749 5.71293 5.72752 5.85672 5.96733 6.01825 6.52861 6.56548 6.64027 6.69933 6.83045 6.95878 7.12355 7.30443 7.45568 7.50718 7.74022 7.87179 8.12783 8.40241 8.47768 8.74466 8.76941 9.18633 9.76091 10.06950 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003202 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.658644 B = 8741.189865 C = 9849.370973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.188 4.188 3 C 0.287 3.713 4 H 0.122 0.878 5 N -0.740 5.740 6 C 0.693 3.307 7 O -0.529 6.529 8 N -0.666 5.666 9 C 0.356 3.644 10 C -0.247 4.247 11 C 0.145 3.855 12 C -0.455 4.455 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.787 5.787 16 Si 0.910 3.090 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.285 4.285 21 C 0.121 3.879 22 N -0.553 5.553 23 C 0.076 3.924 24 H 0.088 0.912 25 C -0.152 4.152 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.367 6.367 29 H 0.215 0.785 30 H 0.398 0.602 31 H 0.404 0.596 32 H 0.127 0.873 33 H 0.281 0.719 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 15.695 5.862 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.181 3.819 4 H 0.139 0.861 5 N -0.399 5.399 6 C 0.393 3.607 7 O -0.400 6.400 8 N -0.314 5.314 9 C 0.130 3.870 10 C -0.273 4.273 11 C 0.137 3.863 12 C -0.486 4.486 13 H 0.101 0.899 14 C -0.140 4.140 15 N -0.413 5.413 16 Si 0.734 3.266 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.309 4.309 21 C -0.033 4.033 22 N -0.272 5.272 23 C 0.018 3.982 24 H 0.105 0.895 25 C -0.190 4.190 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.286 6.286 29 H 0.232 0.768 30 H 0.233 0.767 31 H 0.238 0.762 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.081 15.538 7.322 17.451 hybrid contribution 0.807 0.187 -2.229 2.378 sum -2.273 15.725 5.093 16.685 Atomic orbital electron populations 1.24825 0.95817 1.00785 0.99364 1.23282 0.94557 1.00083 1.01029 1.17503 0.83651 0.92263 0.88481 0.86100 1.45149 1.72212 1.05862 1.16631 1.16081 0.79092 0.81727 0.83841 1.91018 1.52556 1.56589 1.39805 1.42527 1.68412 1.07120 1.13303 1.17941 0.95159 0.82091 0.91788 1.21476 1.10698 0.97374 0.97785 1.17552 0.86843 0.90655 0.91283 1.19606 1.26110 0.98042 1.04873 0.89943 1.25950 0.93715 0.94174 1.00207 1.69794 1.23757 1.11302 1.36424 0.86233 0.78709 0.80169 0.81477 1.18272 1.19640 1.19906 1.21657 1.13353 0.99580 0.96343 1.21475 0.95624 0.90070 0.96138 1.67213 1.26235 1.04127 1.29661 1.23453 0.93447 0.89632 0.91695 0.89462 1.23201 0.95016 0.97119 1.03633 1.22941 0.98329 0.96444 1.01648 1.23168 0.88917 0.89376 1.01694 1.88970 1.52595 1.35399 1.51642 0.76817 0.76708 0.76165 0.85554 0.90836 0.88066 0.86060 0.89363 0.89616 0.90633 0.90182 0.92413 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.19 -2.80 12.55 -37.12 -0.47 -3.26 16 3 C 0.29 3.87 2.39 -70.71 -0.17 3.70 16 4 H 0.12 1.71 7.58 -51.93 -0.39 1.32 16 5 N -0.74 -10.94 4.04 -61.44 -0.25 -11.19 16 6 C 0.69 13.73 8.47 -86.92 -0.74 13.00 16 7 O -0.53 -12.71 14.26 5.30 0.08 -12.64 16 8 N -0.67 -13.48 5.40 -15.86 -0.09 -13.57 16 9 C 0.36 8.81 7.42 -154.67 -1.15 7.66 16 10 C -0.25 -6.32 8.63 -38.46 -0.33 -6.66 16 11 C 0.15 3.84 5.60 -106.55 -0.60 3.24 16 12 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 13 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 14 C 0.08 1.89 5.20 -17.35 -0.09 1.80 16 15 N -0.79 -19.32 10.93 55.55 0.61 -18.71 16 16 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 C -0.29 -7.09 9.85 -39.07 -0.38 -7.48 16 21 C 0.12 2.96 11.10 -18.05 -0.20 2.76 16 22 N -0.55 -14.46 7.86 -12.75 -0.10 -14.56 16 23 C 0.08 0.77 3.08 -25.67 -0.08 0.69 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 C -0.15 -1.32 6.50 -24.73 -0.16 -1.48 16 26 C -0.16 -1.08 7.01 -25.20 -0.18 -1.26 16 27 C 0.05 0.36 7.70 37.73 0.29 0.65 16 28 O -0.37 -4.06 10.44 -35.23 -0.37 -4.43 16 29 H 0.21 2.10 7.80 -54.09 -0.42 1.68 16 30 H 0.40 5.02 7.97 -40.82 -0.33 4.70 16 31 H 0.40 6.75 8.71 -40.82 -0.36 6.39 16 32 H 0.13 3.19 6.22 -52.48 -0.33 2.87 16 33 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 34 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 35 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 36 H 0.09 0.89 6.99 -51.93 -0.36 0.52 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -33.22 354.13 -8.95 -42.17 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -5.12 Total: 15.47 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.02 Total: -0.72 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.17 Total: -58.03 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.29 Total: -17.07 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.22 -8.95 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.551 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds