Wall clock time and date at job start Tue Mar 31 2020 11:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47361 * 306.70401 * 3 2 1 5 5 N 1.46502 * 109.47234 * 66.70632 * 3 2 1 6 6 C 1.34771 * 119.99755 * 274.99505 * 5 3 2 7 7 O 1.21580 * 120.00038 * 0.02562 * 6 5 3 8 8 N 1.34775 * 120.00137 * 180.02562 * 6 5 3 9 9 C 1.39460 * 120.00209 * 175.12783 * 8 6 5 10 10 C 1.38643 * 119.65083 * 185.01789 * 9 8 6 11 11 C 1.40818 * 118.67869 * 179.75791 * 10 9 8 12 12 C 1.41545 * 121.00120 * 180.23761 * 11 10 9 13 13 H 1.07996 * 119.99880 * 203.99187 * 12 11 10 14 14 C 1.40031 * 119.99858 * 23.98733 * 12 11 10 15 15 N 1.30735 * 119.99845 * 16.80959 * 14 12 11 16 16 Si 1.86801 * 119.99738 * 196.80745 * 14 12 11 17 17 H 1.48498 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46920 * 120.00389 * 16 14 12 19 19 H 1.48501 * 109.47073 * 239.99918 * 16 14 12 20 20 C 1.41166 * 118.00281 * 0.49764 * 11 10 9 21 21 C 1.36590 * 119.12564 * 359.73682 * 20 11 10 22 22 N 1.32065 * 121.26279 * 0.02562 * 21 20 11 23 23 C 1.53008 * 109.46973 * 186.70160 * 3 2 1 24 24 H 1.09003 * 110.67138 * 62.03872 * 23 3 2 25 25 C 1.54993 * 110.61877 * 184.99961 * 23 3 2 26 26 C 1.54805 * 102.12659 * 155.54405 * 25 23 3 27 27 C 1.54103 * 104.18468 * 339.10350 * 26 25 23 28 28 O 1.43744 * 107.29461 * 357.96764 * 27 26 25 29 29 H 4.18734 * 15.03934 * 0.02562 * 4 2 1 30 30 H 0.97000 * 120.00136 * 95.00145 * 5 3 2 31 31 H 0.97001 * 120.00093 * 355.11897 * 8 6 5 32 32 H 1.08004 * 120.66242 * 359.97327 * 10 9 8 33 33 H 0.97006 * 119.99997 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.43519 * 179.71516 * 20 11 10 35 35 H 1.08007 * 119.36651 * 179.97438 * 21 20 11 36 36 H 1.08999 * 110.90658 * 37.32412 * 25 23 3 37 37 H 1.09002 * 110.90486 * 273.76064 * 25 23 3 38 38 H 1.09003 * 110.48854 * 97.77594 * 26 25 23 39 39 H 1.08995 * 110.49158 * 220.42935 * 26 25 23 40 40 H 1.08998 * 109.88267 * 117.39366 * 27 26 25 41 41 H 1.08999 * 109.87989 * 238.54312 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.6134 0.8239 5 7 3.1346 -0.5453 -1.2686 6 6 3.2640 -1.8778 -1.4234 7 8 2.9748 -2.6268 -0.5105 8 7 3.7139 -2.3802 -2.5903 9 6 3.9445 -3.7497 -2.7173 10 6 4.5054 -4.2456 -3.8842 11 6 4.7341 -5.6311 -3.9884 12 6 5.3088 -6.1894 -5.1553 13 1 5.1346 -7.2268 -5.3997 14 6 6.1032 -5.3966 -5.9927 15 7 6.5865 -4.2636 -5.5545 16 14 6.4723 -5.9579 -7.7357 17 1 5.8123 -7.2645 -7.9852 18 1 5.9577 -4.9518 -8.6991 19 1 7.9401 -6.1032 -7.9085 20 6 4.3679 -6.4473 -2.8964 21 6 3.8163 -5.8682 -1.7892 22 7 3.6203 -4.5639 -1.7235 23 6 3.1553 1.4336 0.1683 24 1 2.8325 1.8469 1.1239 25 6 4.6997 1.4818 0.0466 26 6 4.9457 2.9452 -0.3941 27 6 3.5952 3.3936 -0.9856 28 8 2.7061 2.2658 -0.9238 29 1 -1.0500 -0.0008 0.0002 30 1 3.3650 0.0522 -1.9971 31 1 3.8773 -1.7892 -3.3419 32 1 4.7651 -3.5819 -4.6958 33 1 7.1371 -3.7145 -6.1345 34 1 4.5215 -7.5157 -2.9362 35 1 3.5342 -6.4891 -0.9516 36 1 5.0521 0.7826 -0.7118 37 1 5.1721 1.2804 1.0081 38 1 5.2101 3.5628 0.4643 39 1 5.7276 2.9891 -1.1522 40 1 3.1892 4.2181 -0.3995 41 1 3.7291 3.7037 -2.0219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:18 Heat of formation + Delta-G solvation = 5.373449 kcal Electronic energy + Delta-G solvation = -25444.856632 eV Core-core repulsion = 21711.941057 eV Total energy + Delta-G solvation = -3732.915575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62097 -40.59252 -39.65062 -36.69378 -35.97210 -35.49686 -33.52294 -32.99067 -32.41745 -31.20862 -29.97673 -27.91157 -26.97018 -23.92104 -23.65333 -22.84086 -22.09616 -21.83001 -19.84276 -19.54823 -19.21733 -17.95333 -17.49240 -17.01748 -16.83568 -16.58618 -16.25941 -16.05286 -15.93724 -15.71766 -15.16171 -14.80184 -14.70966 -14.46800 -14.33453 -14.09282 -13.73116 -13.18540 -12.91281 -12.68688 -12.65316 -12.54735 -12.26217 -12.06624 -11.89776 -11.66357 -11.58103 -11.53019 -11.24194 -11.15609 -11.12526 -10.66940 -10.35372 -9.92569 -9.60446 -8.85240 -8.63965 -6.55158 0.84030 1.01056 1.27994 1.42324 1.55868 1.58358 1.86876 2.07245 2.20935 2.25638 2.79033 2.83751 3.17571 3.29719 3.63000 3.77970 3.88021 4.00994 4.12077 4.20840 4.25138 4.38507 4.45559 4.72893 4.76731 4.84768 4.88916 4.94164 4.98853 5.03247 5.09668 5.10639 5.22573 5.23108 5.36479 5.50911 5.65449 5.79712 5.90626 5.96366 6.26902 6.56446 6.66402 6.80293 6.83018 6.94023 7.57655 7.89785 8.27092 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.003202 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.658644 B = 8741.189865 C = 9849.370973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.229 4.229 3 C 0.282 3.718 4 H 0.109 0.891 5 N -0.718 5.718 6 C 0.693 3.307 7 O -0.573 6.573 8 N -0.659 5.659 9 C 0.353 3.647 10 C -0.263 4.263 11 C 0.117 3.883 12 C -0.483 4.483 13 H 0.084 0.916 14 C 0.041 3.959 15 N -0.810 5.810 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.262 1.262 19 H -0.265 1.265 20 C -0.299 4.299 21 C 0.115 3.885 22 N -0.579 5.579 23 C 0.084 3.916 24 H 0.105 0.895 25 C -0.153 4.153 26 C -0.148 4.148 27 C 0.040 3.960 28 O -0.390 6.390 29 H 0.246 0.754 30 H 0.410 0.590 31 H 0.419 0.581 32 H 0.124 0.876 33 H 0.293 0.707 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 17.144 5.071 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.231 4.231 3 C 0.177 3.823 4 H 0.127 0.873 5 N -0.375 5.375 6 C 0.393 3.607 7 O -0.447 6.447 8 N -0.308 5.308 9 C 0.126 3.874 10 C -0.289 4.289 11 C 0.108 3.892 12 C -0.514 4.514 13 H 0.102 0.898 14 C -0.177 4.177 15 N -0.435 5.435 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.190 1.190 20 C -0.323 4.323 21 C -0.038 4.038 22 N -0.299 5.299 23 C 0.026 3.974 24 H 0.122 0.878 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.037 4.037 28 O -0.310 6.310 29 H 0.262 0.738 30 H 0.247 0.753 31 H 0.256 0.744 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.165 0.835 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.745 17.064 6.530 18.476 hybrid contribution 0.679 -0.198 -1.946 2.070 sum -2.067 16.867 4.584 17.600 Atomic orbital electron populations 1.25708 0.96847 0.99636 0.97794 1.23769 0.95515 1.01295 1.02482 1.17706 0.83498 0.94138 0.86988 0.87303 1.44929 1.70875 1.04029 1.17700 1.16204 0.78570 0.82922 0.82985 1.90981 1.54475 1.58160 1.41070 1.42414 1.68185 1.05944 1.14283 1.18142 0.94346 0.83604 0.91285 1.21446 1.11938 0.97310 0.98197 1.17980 0.87491 0.91495 0.92208 1.19890 1.27148 0.98656 1.05696 0.89803 1.26810 0.92834 0.94012 1.04003 1.69817 1.23487 1.12026 1.38163 0.85088 0.78755 0.79694 0.75767 1.18220 1.18650 1.18980 1.21842 1.13837 1.00300 0.96277 1.21912 0.94971 0.90107 0.96843 1.67333 1.27338 1.04897 1.30372 1.23410 0.94188 0.87518 0.92264 0.87764 1.23202 0.93904 0.98115 1.03823 1.22923 0.97969 0.95176 1.02454 1.23362 0.88954 0.88738 1.02608 1.88940 1.53706 1.36423 1.51919 0.73783 0.75276 0.74424 0.85850 0.89653 0.86642 0.83547 0.91040 0.88478 0.88820 0.89595 0.91144 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 19.25 74.32 1.43 -3.32 16 2 C -0.23 -6.75 12.55 31.13 0.39 -6.36 16 3 C 0.28 7.59 2.39 43.19 0.10 7.69 16 4 H 0.11 3.18 7.58 -2.39 -0.02 3.16 16 5 N -0.72 -21.23 4.04 -466.57 -1.89 -23.12 16 6 C 0.69 27.91 8.47 179.06 1.52 29.43 16 7 O -0.57 -28.18 14.26 -3.97 -0.06 -28.24 16 8 N -0.66 -27.10 5.40 -322.37 -1.74 -28.84 16 9 C 0.35 17.85 7.42 132.76 0.98 18.83 16 10 C -0.26 -13.74 8.63 23.00 0.20 -13.54 16 11 C 0.12 6.30 5.60 -21.11 -0.12 6.18 16 12 C -0.48 -25.14 9.12 23.52 0.21 -24.92 16 13 H 0.08 4.19 7.90 -2.91 -0.02 4.16 16 14 C 0.04 1.95 5.20 85.29 0.44 2.39 16 15 N -0.81 -39.52 10.93 21.84 0.24 -39.28 16 16 Si 0.99 35.77 29.59 68.60 2.03 37.80 16 17 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 19 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 20 C -0.30 -15.10 9.85 22.60 0.22 -14.88 16 21 C 0.11 5.70 11.10 84.27 0.94 6.64 16 22 N -0.58 -30.88 7.86 -194.26 -1.53 -32.40 16 23 C 0.08 1.62 3.08 31.28 0.10 1.71 16 24 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 25 C -0.15 -2.44 6.50 31.89 0.21 -2.23 16 26 C -0.15 -1.70 7.01 31.58 0.22 -1.48 16 27 C 0.04 0.54 7.70 72.36 0.56 1.10 16 28 O -0.39 -8.08 10.44 -148.98 -1.56 -9.64 16 29 H 0.25 4.30 7.80 -4.42 -0.03 4.27 16 30 H 0.41 10.18 7.97 -92.71 -0.74 9.45 16 31 H 0.42 14.10 8.71 -92.71 -0.81 13.29 16 32 H 0.12 6.38 6.22 -2.91 -0.02 6.36 16 33 H 0.29 12.66 8.29 -92.70 -0.77 11.89 16 34 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 35 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 36 H 0.07 1.38 6.99 -2.39 -0.02 1.37 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.41 354.13 2.44 -69.97 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.47 Total: 46.52 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.40 Total: 7.24 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -4.91 Total: -123.65 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.61 Total: -37.88 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -72.41 2.44 -69.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.343 kcal (2) G-P(sol) polarization free energy of solvation -72.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds