Wall clock time and date at job start Tue Mar 31 2020 11:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46851 * 353.06803 * 3 2 1 5 5 N 1.46504 * 109.47113 * 113.06980 * 3 2 1 6 6 C 1.34778 * 119.99741 * 275.00114 * 5 3 2 7 7 O 1.21572 * 120.00461 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99508 * 180.02562 * 6 5 3 9 9 C 1.39249 * 119.99562 * 183.70468 * 8 6 5 10 10 C 1.39679 * 119.57743 * 339.04298 * 9 8 6 11 11 C 1.38644 * 119.49576 * 179.97438 * 10 9 8 12 12 C 1.38354 * 118.67373 * 0.02562 * 11 10 9 13 13 C 1.40577 * 119.12795 * 0.02562 * 12 11 10 14 14 C 1.41329 * 119.78746 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00086 * 5.15477 * 14 13 12 16 16 C 1.40031 * 120.00017 * 185.16319 * 14 13 12 17 17 N 1.30745 * 119.99832 * 354.84800 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 174.85176 * 16 14 13 19 19 H 1.48504 * 109.46724 * 94.99456 * 18 16 14 20 20 H 1.48495 * 109.46799 * 214.99504 * 18 16 14 21 21 H 1.48500 * 109.47163 * 334.99867 * 18 16 14 22 22 N 1.31910 * 119.57313 * 158.76961 * 9 8 6 23 23 C 1.52995 * 109.47034 * 233.07013 * 3 2 1 24 24 H 1.08997 * 109.82369 * 185.57044 * 23 3 2 25 25 C 1.54381 * 109.83203 * 64.58358 * 23 3 2 26 26 C 1.55305 * 102.25529 * 219.12883 * 25 23 3 27 27 C 1.54939 * 100.93964 * 34.13741 * 26 25 23 28 28 O 1.43244 * 109.82942 * 306.45561 * 23 3 2 29 29 H 4.18739 * 15.04052 * 0.02562 * 4 2 1 30 30 H 0.96996 * 119.99685 * 94.99968 * 5 3 2 31 31 H 0.97001 * 120.00088 * 3.70577 * 8 6 5 32 32 H 1.08002 * 120.25603 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.66831 * 180.02562 * 11 10 9 34 34 H 1.07993 * 120.43713 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99705 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.85228 * 337.32631 * 25 23 3 37 37 H 1.09005 * 110.84520 * 100.93626 * 25 23 3 38 38 H 1.08996 * 111.12405 * 276.21389 * 26 25 23 39 39 H 1.09001 * 111.11893 * 152.05602 * 26 25 23 40 40 H 1.09001 * 110.30740 * 204.63748 * 27 26 25 41 41 H 1.09003 * 110.39847 * 82.51018 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -1.0194 0.1240 5 7 3.1342 0.5421 -1.2708 6 6 3.2632 -0.2654 -2.3421 7 8 2.9750 -1.4432 -2.2539 8 7 3.7127 0.2327 -3.5111 9 6 3.7731 -0.5830 -4.6381 10 6 3.7993 -1.9710 -4.4840 11 6 3.8589 -2.7815 -5.6073 12 6 3.8912 -2.1851 -6.8553 13 6 3.8633 -0.7824 -6.9443 14 6 3.8952 -0.1586 -8.2120 15 1 3.8567 -0.7577 -9.1098 16 6 3.9768 1.2363 -8.3041 17 7 3.9220 1.9672 -7.2214 18 14 4.1639 2.0528 -9.9738 19 1 2.8269 2.4518 -10.4822 20 1 5.0232 3.2567 -9.8425 21 1 4.7902 1.0987 -10.9240 22 7 3.7992 -0.0349 -5.8377 23 6 3.1556 0.8676 1.1531 24 1 4.2410 0.9526 1.0999 25 6 2.7428 0.2404 2.5020 26 6 2.3693 1.4896 3.3458 27 6 1.7705 2.4128 2.2550 28 8 2.5621 2.1693 1.0814 29 1 -1.0500 -0.0011 -0.0004 30 1 3.3644 1.4817 -1.3411 31 1 3.9942 1.1592 -3.5672 32 1 3.7735 -2.4096 -3.4974 33 1 3.8797 -3.8569 -5.5101 34 1 3.9381 -2.7891 -7.7492 35 1 3.9789 2.9335 -7.2852 36 1 1.8812 -0.4155 2.3774 37 1 3.5782 -0.2962 2.9521 38 1 3.2543 1.9376 3.7973 39 1 1.6256 1.2434 4.1038 40 1 1.8523 3.4571 2.5566 41 1 0.7281 2.1541 2.0686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:38 Heat of formation + Delta-G solvation = 34.742744 kcal Electronic energy + Delta-G solvation = -25383.787136 eV Core-core repulsion = 21652.145110 eV Total energy + Delta-G solvation = -3731.642027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41812 -39.59140 -37.83696 -35.44541 -34.14294 -33.28878 -32.60452 -32.13384 -30.40070 -30.25242 -28.87136 -26.04234 -25.27961 -22.44215 -21.94344 -21.76030 -21.50056 -20.16996 -18.59076 -18.13386 -17.32203 -17.00480 -16.65374 -16.09600 -15.50887 -15.13950 -14.83151 -14.61657 -14.37335 -14.23458 -13.96322 -13.47725 -13.32434 -12.95645 -12.86410 -12.21563 -12.11900 -11.96315 -11.77913 -11.56005 -11.24460 -11.22788 -11.08978 -10.89930 -10.63385 -10.62739 -10.37274 -10.08233 -9.77958 -9.65305 -9.29638 -9.09481 -8.93981 -7.97638 -7.62296 -7.03396 -6.37059 -4.45329 2.45418 2.73069 2.88044 2.99106 3.11387 3.14977 3.28818 3.32312 3.53567 3.69840 3.98471 4.09901 4.36945 4.39349 4.52427 4.69111 4.82862 4.83285 4.92294 5.19844 5.32288 5.38019 5.43841 5.47791 5.56381 5.77596 5.95147 6.00080 6.20625 6.43880 6.49646 6.71232 6.77966 6.86668 7.00795 7.15419 7.27658 7.55928 7.66450 7.67800 7.96436 8.12215 8.22001 8.48310 8.75015 8.94125 9.08263 10.10464 10.35936 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.002935 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.965807 B = 9539.232980 C =10397.516443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.183 4.183 3 C 0.267 3.733 4 H 0.117 0.883 5 N -0.736 5.736 6 C 0.709 3.291 7 O -0.568 6.568 8 N -0.656 5.656 9 C 0.372 3.628 10 C -0.314 4.314 11 C -0.051 4.051 12 C -0.291 4.291 13 C 0.280 3.720 14 C -0.437 4.437 15 H 0.085 0.915 16 C 0.071 3.929 17 N -0.723 5.723 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.261 1.261 22 N -0.508 5.508 23 C 0.079 3.921 24 H 0.099 0.901 25 C -0.149 4.149 26 C -0.154 4.154 27 C 0.051 3.949 28 O -0.370 6.370 29 H 0.215 0.785 30 H 0.403 0.597 31 H 0.404 0.596 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.270 0.730 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 2.872 19.527 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C 0.161 3.839 4 H 0.135 0.865 5 N -0.392 5.392 6 C 0.409 3.591 7 O -0.445 6.445 8 N -0.303 5.303 9 C 0.137 3.863 10 C -0.338 4.338 11 C -0.076 4.076 12 C -0.314 4.314 13 C 0.153 3.847 14 C -0.469 4.469 15 H 0.103 0.897 16 C -0.153 4.153 17 N -0.345 5.345 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.185 1.185 22 N -0.227 5.227 23 C 0.020 3.980 24 H 0.117 0.883 25 C -0.187 4.187 26 C -0.192 4.192 27 C -0.025 4.025 28 O -0.290 6.290 29 H 0.232 0.768 30 H 0.238 0.762 31 H 0.239 0.761 32 H 0.157 0.843 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.263 3.076 19.420 19.792 hybrid contribution -0.070 0.331 -0.660 0.741 sum -2.333 3.407 18.760 19.209 Atomic orbital electron populations 1.24842 0.95820 1.01278 0.99229 1.23245 0.94509 0.99815 1.00905 1.18062 0.83847 0.99057 0.82978 0.86510 1.45054 1.71607 1.12827 1.09717 1.15785 0.78184 0.85049 0.80094 1.90796 1.56259 1.14400 1.83011 1.42215 1.65756 1.15024 1.07279 1.18234 0.95104 0.86764 0.86225 1.21836 1.19302 0.92547 1.00148 1.20832 0.96385 0.97569 0.92786 1.21710 1.17366 0.96036 0.96246 1.18166 0.88074 0.87608 0.90851 1.19543 1.43792 0.91542 0.92017 0.89725 1.26035 0.93525 0.97894 0.97853 1.70128 1.29847 1.05818 1.28735 0.86336 0.78940 0.79143 0.82499 1.19617 1.20188 1.18528 1.68014 1.21727 1.37800 0.95150 1.23059 0.98180 0.83331 0.93420 0.88323 1.23151 1.03113 0.98534 0.93886 1.23249 1.01842 0.95663 0.98420 1.23387 0.95159 0.99770 0.84211 1.88454 1.66067 1.32405 1.42026 0.76849 0.76224 0.76100 0.84320 0.88404 0.88306 0.91916 0.89709 0.89333 0.90209 0.89809 0.89726 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 19.25 29.55 0.57 -1.91 16 2 C -0.18 -2.56 11.09 -37.12 -0.41 -2.97 16 3 C 0.27 3.40 2.31 -70.72 -0.16 3.24 16 4 H 0.12 1.53 7.58 -51.93 -0.39 1.14 16 5 N -0.74 -10.83 5.04 -61.44 -0.31 -11.14 16 6 C 0.71 13.80 8.41 -86.91 -0.73 13.07 16 7 O -0.57 -12.76 12.66 5.30 0.07 -12.69 16 8 N -0.66 -13.88 5.42 -15.78 -0.09 -13.97 16 9 C 0.37 9.55 7.51 -154.99 -1.16 8.38 16 10 C -0.31 -7.94 8.89 -38.89 -0.35 -8.28 16 11 C -0.05 -1.25 10.15 -39.39 -0.40 -1.64 16 12 C -0.29 -7.51 9.83 -38.66 -0.38 -7.89 16 13 C 0.28 7.90 6.55 -85.00 -0.56 7.34 16 14 C -0.44 -11.90 9.13 -37.74 -0.34 -12.25 16 15 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 16 C 0.07 1.83 5.49 -17.34 -0.10 1.74 16 17 N -0.72 -19.17 11.48 55.55 0.64 -18.54 16 18 Si 0.91 18.80 29.56 -169.99 -5.03 13.77 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 N -0.51 -14.25 7.91 -10.26 -0.08 -14.33 16 23 C 0.08 0.75 3.35 -26.01 -0.09 0.66 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.15 -1.07 6.36 -24.78 -0.16 -1.23 16 26 C -0.15 -0.94 7.16 -24.49 -0.18 -1.12 16 27 C 0.05 0.41 7.70 38.18 0.29 0.71 16 28 O -0.37 -4.00 10.28 -35.23 -0.36 -4.36 16 29 H 0.21 2.00 7.80 -54.09 -0.42 1.57 16 30 H 0.40 5.18 8.46 -40.82 -0.35 4.83 16 31 H 0.40 7.69 8.84 -40.82 -0.36 7.33 16 32 H 0.14 3.48 5.16 -52.92 -0.27 3.20 16 33 H 0.10 2.07 8.06 -52.48 -0.42 1.64 16 34 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 36 H 0.08 0.66 7.01 -51.93 -0.36 0.30 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -33.78 352.83 -9.08 -42.86 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.09 Total: 15.22 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -4.15 Total: -2.14 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.16 Total: -57.98 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.30 Total: -17.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.78 -9.08 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.603 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds