Wall clock time and date at job start Tue Mar 31 2020 11:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46851 * 353.06803 * 3 2 1 5 5 N 1.46504 * 109.47113 * 113.06980 * 3 2 1 6 6 C 1.34778 * 119.99741 * 275.00114 * 5 3 2 7 7 O 1.21572 * 120.00461 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99508 * 180.02562 * 6 5 3 9 9 C 1.39249 * 119.99562 * 183.70468 * 8 6 5 10 10 C 1.39679 * 119.57743 * 339.04298 * 9 8 6 11 11 C 1.38644 * 119.49576 * 179.97438 * 10 9 8 12 12 C 1.38354 * 118.67373 * 0.02562 * 11 10 9 13 13 C 1.40577 * 119.12795 * 0.02562 * 12 11 10 14 14 C 1.41329 * 119.78746 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00086 * 5.15477 * 14 13 12 16 16 C 1.40031 * 120.00017 * 185.16319 * 14 13 12 17 17 N 1.30745 * 119.99832 * 354.84800 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 174.85176 * 16 14 13 19 19 H 1.48504 * 109.46724 * 94.99456 * 18 16 14 20 20 H 1.48495 * 109.46799 * 214.99504 * 18 16 14 21 21 H 1.48500 * 109.47163 * 334.99867 * 18 16 14 22 22 N 1.31910 * 119.57313 * 158.76961 * 9 8 6 23 23 C 1.52995 * 109.47034 * 233.07013 * 3 2 1 24 24 H 1.08997 * 109.82369 * 185.57044 * 23 3 2 25 25 C 1.54381 * 109.83203 * 64.58358 * 23 3 2 26 26 C 1.55305 * 102.25529 * 219.12883 * 25 23 3 27 27 C 1.54939 * 100.93964 * 34.13741 * 26 25 23 28 28 O 1.43244 * 109.82942 * 306.45561 * 23 3 2 29 29 H 4.18739 * 15.04052 * 0.02562 * 4 2 1 30 30 H 0.96996 * 119.99685 * 94.99968 * 5 3 2 31 31 H 0.97001 * 120.00088 * 3.70577 * 8 6 5 32 32 H 1.08002 * 120.25603 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.66831 * 180.02562 * 11 10 9 34 34 H 1.07993 * 120.43713 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99705 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.85228 * 337.32631 * 25 23 3 37 37 H 1.09005 * 110.84520 * 100.93626 * 25 23 3 38 38 H 1.08996 * 111.12405 * 276.21389 * 26 25 23 39 39 H 1.09001 * 111.11893 * 152.05602 * 26 25 23 40 40 H 1.09001 * 110.30740 * 204.63748 * 27 26 25 41 41 H 1.09003 * 110.39847 * 82.51018 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -1.0194 0.1240 5 7 3.1342 0.5421 -1.2708 6 6 3.2632 -0.2654 -2.3421 7 8 2.9750 -1.4432 -2.2539 8 7 3.7127 0.2327 -3.5111 9 6 3.7731 -0.5830 -4.6381 10 6 3.7993 -1.9710 -4.4840 11 6 3.8589 -2.7815 -5.6073 12 6 3.8912 -2.1851 -6.8553 13 6 3.8633 -0.7824 -6.9443 14 6 3.8952 -0.1586 -8.2120 15 1 3.8567 -0.7577 -9.1098 16 6 3.9768 1.2363 -8.3041 17 7 3.9220 1.9672 -7.2214 18 14 4.1639 2.0528 -9.9738 19 1 2.8269 2.4518 -10.4822 20 1 5.0232 3.2567 -9.8425 21 1 4.7902 1.0987 -10.9240 22 7 3.7992 -0.0349 -5.8377 23 6 3.1556 0.8676 1.1531 24 1 4.2410 0.9526 1.0999 25 6 2.7428 0.2404 2.5020 26 6 2.3693 1.4896 3.3458 27 6 1.7705 2.4128 2.2550 28 8 2.5621 2.1693 1.0814 29 1 -1.0500 -0.0011 -0.0004 30 1 3.3644 1.4817 -1.3411 31 1 3.9942 1.1592 -3.5672 32 1 3.7735 -2.4096 -3.4974 33 1 3.8797 -3.8569 -5.5101 34 1 3.9381 -2.7891 -7.7492 35 1 3.9789 2.9335 -7.2852 36 1 1.8812 -0.4155 2.3774 37 1 3.5782 -0.2962 2.9521 38 1 3.2543 1.9376 3.7973 39 1 1.6256 1.2434 4.1038 40 1 1.8523 3.4571 2.5566 41 1 0.7281 2.1541 2.0686 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:37 Heat of formation + Delta-G solvation = 12.432522 kcal Electronic energy + Delta-G solvation = -25384.754580 eV Core-core repulsion = 21652.145110 eV Total energy + Delta-G solvation = -3732.609470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77840 -40.66042 -39.62663 -36.70253 -35.89584 -35.13844 -33.62988 -32.95091 -32.31748 -31.44519 -30.48357 -27.49054 -26.76378 -23.84378 -23.47275 -22.76079 -22.66118 -21.76323 -19.93846 -19.46598 -19.11108 -18.23050 -17.71035 -17.02860 -16.88911 -16.62801 -16.35901 -16.25289 -15.99786 -15.42046 -15.29003 -14.74793 -14.65531 -14.23295 -14.13659 -13.81837 -13.74388 -12.96428 -12.92323 -12.70198 -12.68082 -12.58185 -12.48418 -12.12052 -11.84852 -11.80385 -11.64078 -11.60162 -11.33908 -11.05986 -10.78590 -10.50052 -10.40368 -9.96770 -9.62638 -8.96741 -8.30022 -6.49607 0.82448 1.12838 1.20073 1.42850 1.53712 1.58507 1.85741 2.06371 2.08779 2.24976 2.81401 2.88713 3.17896 3.33705 3.59896 3.74538 3.92152 3.96699 4.19637 4.26570 4.34354 4.41227 4.52904 4.63810 4.82400 4.84343 4.88365 4.92807 4.94096 4.97743 5.01090 5.08628 5.24400 5.27307 5.34122 5.57741 5.68539 5.84524 5.98533 6.02566 6.20741 6.29513 6.64632 6.74601 6.87475 7.01359 7.44487 8.11108 8.45977 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.002935 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.965807 B = 9539.232980 C =10397.516443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.218 4.218 3 C 0.261 3.739 4 H 0.111 0.889 5 N -0.716 5.716 6 C 0.709 3.291 7 O -0.598 6.598 8 N -0.655 5.655 9 C 0.362 3.638 10 C -0.327 4.327 11 C -0.049 4.049 12 C -0.308 4.308 13 C 0.245 3.755 14 C -0.467 4.467 15 H 0.092 0.908 16 C 0.025 3.975 17 N -0.754 5.754 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.267 1.267 21 H -0.255 1.255 22 N -0.535 5.535 23 C 0.083 3.917 24 H 0.112 0.888 25 C -0.146 4.146 26 C -0.144 4.144 27 C 0.042 3.958 28 O -0.392 6.392 29 H 0.242 0.758 30 H 0.413 0.587 31 H 0.412 0.588 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.279 0.721 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 3.640 20.295 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.219 4.219 3 C 0.156 3.844 4 H 0.128 0.872 5 N -0.372 5.372 6 C 0.409 3.591 7 O -0.477 6.477 8 N -0.302 5.302 9 C 0.126 3.874 10 C -0.352 4.352 11 C -0.074 4.074 12 C -0.331 4.331 13 C 0.118 3.882 14 C -0.498 4.498 15 H 0.110 0.890 16 C -0.197 4.197 17 N -0.376 5.376 18 Si 0.809 3.191 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.179 1.179 22 N -0.254 5.254 23 C 0.025 3.975 24 H 0.129 0.871 25 C -0.184 4.184 26 C -0.181 4.181 27 C -0.034 4.034 28 O -0.312 6.312 29 H 0.259 0.741 30 H 0.250 0.750 31 H 0.248 0.752 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.296 3.867 20.256 20.749 hybrid contribution -0.133 0.089 -0.784 0.800 sum -2.429 3.957 19.472 20.018 Atomic orbital electron populations 1.25656 0.96799 1.00224 0.97995 1.23652 0.95327 1.00881 1.02078 1.18377 0.83721 0.99582 0.82750 0.87174 1.44965 1.70250 1.12815 1.09154 1.15904 0.77772 0.85043 0.80345 1.90752 1.57540 1.15910 1.83537 1.42140 1.66090 1.15061 1.06885 1.18563 0.94342 0.87695 0.86770 1.22049 1.19768 0.92767 1.00633 1.21200 0.94863 0.99277 0.92015 1.21899 1.18186 0.95567 0.97465 1.18700 0.88870 0.88984 0.91625 1.19936 1.44829 0.92949 0.92113 0.89002 1.26983 0.92559 0.97894 1.02222 1.70207 1.29674 1.06559 1.31202 0.85097 0.79099 0.78001 0.76881 1.18999 1.19177 1.17898 1.68038 1.23091 1.38483 0.95837 1.23106 0.98568 0.82768 0.93106 0.87054 1.23171 1.03548 0.98955 0.92724 1.23240 1.02622 0.94383 0.97901 1.23565 0.94624 1.01040 0.84179 1.88429 1.66453 1.32734 1.43564 0.74119 0.75025 0.75183 0.84074 0.85107 0.86801 0.91077 0.90551 0.87345 0.88948 0.88266 0.88540 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 19.25 74.32 1.43 -3.23 16 2 C -0.22 -5.99 11.09 31.12 0.35 -5.65 16 3 C 0.26 6.57 2.31 43.18 0.10 6.67 16 4 H 0.11 2.91 7.58 -2.39 -0.02 2.89 16 5 N -0.72 -21.02 5.04 -466.58 -2.35 -23.37 16 6 C 0.71 27.94 8.41 179.05 1.51 29.44 16 7 O -0.60 -27.27 12.66 -3.94 -0.05 -27.32 16 8 N -0.65 -28.24 5.42 -322.12 -1.75 -29.99 16 9 C 0.36 19.03 7.51 133.26 1.00 20.03 16 10 C -0.33 -16.80 8.89 22.72 0.20 -16.59 16 11 C -0.05 -2.40 10.15 22.39 0.23 -2.17 16 12 C -0.31 -16.12 9.83 22.87 0.22 -15.89 16 13 C 0.24 14.13 6.55 40.19 0.26 14.39 16 14 C -0.47 -25.78 9.13 23.47 0.21 -25.57 16 15 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 16 C 0.03 1.29 5.49 85.29 0.47 1.76 16 17 N -0.75 -40.38 11.48 21.84 0.25 -40.13 16 18 Si 0.99 38.25 29.56 68.60 2.03 40.28 16 19 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 N -0.53 -30.77 7.91 -186.37 -1.47 -32.25 16 23 C 0.08 1.48 3.35 31.06 0.10 1.58 16 24 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 25 C -0.15 -1.82 6.36 31.85 0.20 -1.62 16 26 C -0.14 -1.41 7.16 32.05 0.23 -1.18 16 27 C 0.04 0.61 7.70 72.65 0.56 1.17 16 28 O -0.39 -8.02 10.28 -148.98 -1.53 -9.55 16 29 H 0.24 4.09 7.80 -4.42 -0.03 4.06 16 30 H 0.41 10.49 8.46 -92.71 -0.78 9.70 16 31 H 0.41 16.02 8.84 -92.71 -0.82 15.21 16 32 H 0.14 7.17 5.16 -9.85 -0.05 7.11 16 33 H 0.13 5.37 8.06 -2.91 -0.02 5.34 16 34 H 0.11 5.41 8.06 -2.91 -0.02 5.39 16 35 H 0.28 13.38 8.29 -92.71 -0.77 12.62 16 36 H 0.08 1.10 7.01 -2.39 -0.02 1.08 16 37 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -74.04 352.83 1.65 -72.40 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -0.56 Total: 46.79 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 7.08 Total: 3.14 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -5.32 Total: -125.73 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.58 Total: -36.86 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -74.04 1.65 -72.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.829 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds