Wall clock time and date at job start Tue Mar 31 2020 11:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47038 * 2.43651 * 3 2 1 5 5 N 1.46501 * 109.46650 * 242.43992 * 3 2 1 6 6 C 1.34773 * 120.00138 * 85.00661 * 5 3 2 7 7 O 1.21572 * 120.00112 * 359.97438 * 6 5 3 8 8 N 1.34781 * 119.99742 * 180.02562 * 6 5 3 9 9 C 1.39249 * 119.99950 * 185.14098 * 8 6 5 10 10 C 1.39681 * 119.57981 * 174.59292 * 9 8 6 11 11 C 1.38646 * 119.49745 * 180.25116 * 10 9 8 12 12 C 1.38350 * 118.67024 * 359.50299 * 11 10 9 13 13 C 1.40581 * 119.13136 * 0.25348 * 12 11 10 14 14 C 1.41328 * 119.78449 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.40029 * 119.99606 * 179.97438 * 14 13 12 17 17 N 1.30744 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47044 * 59.99967 * 18 16 14 20 20 H 1.48497 * 109.47254 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46739 * 300.00232 * 18 16 14 22 22 N 1.31913 * 119.57009 * 354.34092 * 9 8 6 23 23 C 1.52998 * 109.47078 * 122.44047 * 3 2 1 24 24 H 1.09004 * 110.33199 * 300.69861 * 23 3 2 25 25 C 1.54474 * 110.37329 * 178.44724 * 23 3 2 26 26 C 1.54506 * 104.06491 * 217.19075 * 25 23 3 27 27 C 1.54479 * 104.06058 * 359.97438 * 26 25 23 28 28 O 1.44424 * 110.37216 * 62.94566 * 23 3 2 29 29 H 4.18737 * 15.04036 * 359.97438 * 4 2 1 30 30 H 0.97002 * 119.99579 * 264.99964 * 5 3 2 31 31 H 0.97001 * 120.00446 * 5.12942 * 8 6 5 32 32 H 1.08001 * 120.25098 * 0.02697 * 10 9 8 33 33 H 1.07995 * 120.66242 * 179.77774 * 11 10 9 34 34 H 1.07996 * 120.43323 * 180.22696 * 12 11 10 35 35 H 0.96993 * 120.00329 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.51058 * 335.83427 * 25 23 3 37 37 H 1.09005 * 110.51098 * 98.40696 * 25 23 3 38 38 H 1.09001 * 110.51431 * 118.64554 * 26 25 23 39 39 H 1.09006 * 110.50798 * 241.21572 * 26 25 23 40 40 H 1.09002 * 110.36965 * 142.81611 * 27 26 25 41 41 H 1.08999 * 110.37426 * 265.03626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -1.0259 -0.0437 5 7 3.1340 0.6400 1.2245 6 6 3.2631 -0.0811 2.3558 7 8 2.9742 -1.2620 2.3602 8 7 3.7115 0.5072 3.4824 9 6 3.9469 -0.2584 4.6215 10 6 4.5179 0.3387 5.7478 11 6 4.7563 -0.4264 6.8791 12 6 4.4088 -1.7654 6.8603 13 6 3.8324 -2.3066 5.6978 14 6 3.4716 -3.6726 5.6636 15 1 3.6392 -4.2973 6.5285 16 6 2.8967 -4.2161 4.5082 17 7 2.6942 -3.4600 3.4609 18 14 2.4191 -6.0215 4.4631 19 1 1.4177 -6.2952 5.5249 20 1 1.8361 -6.3463 3.1366 21 1 3.6245 -6.8582 4.6919 22 7 3.6230 -1.5372 4.6247 23 6 3.1557 0.7747 -1.2174 24 1 2.7902 0.3176 -2.1370 25 6 4.6997 0.8216 -1.2170 26 6 5.0326 2.2325 -1.7515 27 6 3.6502 2.8709 -2.0122 28 8 2.7421 2.1565 -1.1439 29 1 -1.0500 -0.0011 0.0004 30 1 3.3642 1.5822 1.2210 31 1 3.8705 1.4640 3.4998 32 1 4.7752 1.3875 5.7361 33 1 5.2003 0.0150 7.7591 34 1 4.5784 -2.3869 7.7271 35 1 2.2964 -3.8366 2.6605 36 1 5.0854 0.6957 -0.2054 37 1 5.1053 0.0552 -1.8775 38 1 5.5829 2.8042 -1.0042 39 1 5.6048 2.1652 -2.6769 40 1 3.6669 3.9301 -1.7553 41 1 3.3618 2.7388 -3.0550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:46 Heat of formation + Delta-G solvation = 50.387882 kcal Electronic energy + Delta-G solvation = -26170.127514 eV Core-core repulsion = 22439.163911 eV Total energy + Delta-G solvation = -3730.963602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11106 -39.12267 -37.64454 -35.16148 -33.89823 -32.94268 -32.33438 -31.92016 -30.27165 -29.98103 -28.65993 -25.99909 -25.32092 -22.55756 -21.97353 -21.22875 -21.00609 -19.89546 -18.18317 -18.06736 -17.28617 -16.58808 -16.19617 -15.74525 -15.58078 -14.79881 -14.62069 -14.41066 -14.25857 -13.90130 -13.67466 -13.47616 -13.14954 -12.79158 -12.51439 -12.06338 -11.94879 -11.87520 -11.61108 -11.49341 -11.09797 -10.92117 -10.85914 -10.61025 -10.40886 -10.28921 -10.08660 -9.89719 -9.83141 -9.65681 -9.08145 -8.98208 -8.60249 -7.89927 -7.15857 -6.89193 -6.05299 -4.33702 2.75525 2.90669 3.12192 3.18385 3.20468 3.22244 3.32471 3.60410 3.67861 4.11599 4.19044 4.35545 4.45539 4.70861 4.74138 4.81808 4.99722 5.05755 5.08824 5.26507 5.42013 5.46413 5.61947 5.74959 5.77921 5.94790 6.10260 6.14771 6.18806 6.52804 6.58702 6.65957 6.84896 6.89958 6.96540 7.29058 7.41377 7.67266 7.79494 7.86854 7.92249 8.22415 8.34909 8.70616 8.85552 9.11654 9.62686 10.32677 10.55474 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.004224 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.568953 B = 6627.711374 C = 7860.703454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.288 3.712 4 H 0.121 0.879 5 N -0.745 5.745 6 C 0.664 3.336 7 O -0.459 6.459 8 N -0.672 5.672 9 C 0.387 3.613 10 C -0.358 4.358 11 C -0.036 4.036 12 C -0.308 4.308 13 C 0.272 3.728 14 C -0.426 4.426 15 H 0.081 0.919 16 C 0.057 3.943 17 N -0.648 5.648 18 Si 0.894 3.106 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.268 1.268 22 N -0.470 5.470 23 C 0.075 3.925 24 H 0.084 0.916 25 C -0.153 4.153 26 C -0.154 4.154 27 C 0.043 3.957 28 O -0.363 6.363 29 H 0.213 0.787 30 H 0.392 0.608 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.272 0.728 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 10.517 -12.951 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.184 4.184 3 C 0.182 3.818 4 H 0.138 0.862 5 N -0.405 5.405 6 C 0.363 3.637 7 O -0.322 6.322 8 N -0.320 5.320 9 C 0.147 3.853 10 C -0.384 4.384 11 C -0.060 4.060 12 C -0.331 4.331 13 C 0.147 3.853 14 C -0.456 4.456 15 H 0.099 0.901 16 C -0.172 4.172 17 N -0.266 5.266 18 Si 0.718 3.282 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.192 1.192 22 N -0.189 5.189 23 C 0.017 3.983 24 H 0.101 0.899 25 C -0.191 4.191 26 C -0.192 4.192 27 C -0.034 4.034 28 O -0.282 6.282 29 H 0.230 0.770 30 H 0.225 0.775 31 H 0.228 0.772 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.942 9.022 -13.825 16.535 hybrid contribution 0.263 0.630 0.620 0.922 sum 1.205 9.652 -13.205 16.401 Atomic orbital electron populations 1.24778 0.95796 1.01350 0.99545 1.23360 0.94623 0.99725 1.00706 1.17470 0.83475 0.97960 0.82889 0.86178 1.45224 1.72971 1.13235 1.09026 1.16447 0.80742 0.86417 0.80139 1.91393 1.48203 1.11032 1.81599 1.42530 1.69290 1.10127 1.10042 1.18343 0.92500 0.90751 0.83684 1.20429 1.22270 0.99200 0.96530 1.20533 0.96068 0.93839 0.95547 1.21616 1.15247 0.95530 1.00688 1.18377 0.88109 0.92982 0.85879 1.19533 1.33756 0.93205 0.99154 0.90083 1.26180 0.96150 0.98972 0.95948 1.70329 1.21638 1.34058 1.00589 0.86625 0.79568 0.83868 0.78136 1.19237 1.20453 1.19234 1.68698 1.22314 1.00724 1.27159 1.23294 0.93811 0.83892 0.97330 0.89866 1.23009 0.94968 0.97344 1.03744 1.22928 0.97977 0.96302 1.01974 1.23426 0.88197 0.97310 0.94463 1.89231 1.54249 1.18120 1.66622 0.77039 0.77474 0.77213 0.89198 0.88684 0.88646 0.91611 0.89366 0.90111 0.90518 0.90597 0.89115 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 19.25 29.55 0.57 -2.45 16 2 C -0.18 -3.01 12.58 -37.12 -0.47 -3.48 16 3 C 0.29 4.30 2.30 -70.72 -0.16 4.13 16 4 H 0.12 1.95 7.58 -51.93 -0.39 1.56 16 5 N -0.74 -11.76 4.04 -61.45 -0.25 -12.01 16 6 C 0.66 13.93 8.47 -86.92 -0.74 13.20 16 7 O -0.46 -11.83 11.77 5.30 0.06 -11.77 16 8 N -0.67 -13.70 5.39 -15.78 -0.09 -13.79 16 9 C 0.39 9.66 7.43 -154.99 -1.15 8.51 16 10 C -0.36 -8.20 9.95 -38.89 -0.39 -8.59 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 13 C 0.27 7.77 6.55 -85.00 -0.56 7.22 16 14 C -0.43 -11.94 9.14 -37.74 -0.34 -12.28 16 15 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 16 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 17 N -0.65 -18.32 8.99 55.55 0.50 -17.82 16 18 Si 0.89 19.62 29.56 -169.99 -5.02 14.59 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 N -0.47 -13.46 5.74 -10.26 -0.06 -13.52 16 23 C 0.08 0.84 3.00 -25.96 -0.08 0.76 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 C -0.15 -1.45 6.53 -25.17 -0.16 -1.61 16 26 C -0.15 -1.16 7.09 -25.16 -0.18 -1.34 16 27 C 0.04 0.35 7.63 37.93 0.29 0.64 16 28 O -0.36 -4.25 10.50 -35.23 -0.37 -4.62 16 29 H 0.21 2.47 7.80 -54.09 -0.42 2.05 16 30 H 0.39 5.23 8.15 -40.82 -0.33 4.90 16 31 H 0.39 6.30 8.71 -40.82 -0.36 5.94 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 36 H 0.09 0.98 7.13 -51.93 -0.37 0.61 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -34.60 351.24 -9.40 -44.00 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.23 Total: 12.98 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -4.24 Total: -3.35 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.11 Total: -57.13 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.31 Total: -16.39 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.60 -9.40 -44.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.385 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds