Wall clock time and date at job start Tue Mar 31 2020 11:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47038 * 2.43651 * 3 2 1 5 5 N 1.46501 * 109.46650 * 242.43992 * 3 2 1 6 6 C 1.34773 * 120.00138 * 85.00661 * 5 3 2 7 7 O 1.21572 * 120.00112 * 359.97438 * 6 5 3 8 8 N 1.34781 * 119.99742 * 180.02562 * 6 5 3 9 9 C 1.39249 * 119.99950 * 185.14098 * 8 6 5 10 10 C 1.39681 * 119.57981 * 174.59292 * 9 8 6 11 11 C 1.38646 * 119.49745 * 180.25116 * 10 9 8 12 12 C 1.38350 * 118.67024 * 359.50299 * 11 10 9 13 13 C 1.40581 * 119.13136 * 0.25348 * 12 11 10 14 14 C 1.41328 * 119.78449 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.40029 * 119.99606 * 179.97438 * 14 13 12 17 17 N 1.30744 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47044 * 59.99967 * 18 16 14 20 20 H 1.48497 * 109.47254 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46739 * 300.00232 * 18 16 14 22 22 N 1.31913 * 119.57009 * 354.34092 * 9 8 6 23 23 C 1.52998 * 109.47078 * 122.44047 * 3 2 1 24 24 H 1.09004 * 110.33199 * 300.69861 * 23 3 2 25 25 C 1.54474 * 110.37329 * 178.44724 * 23 3 2 26 26 C 1.54506 * 104.06491 * 217.19075 * 25 23 3 27 27 C 1.54479 * 104.06058 * 359.97438 * 26 25 23 28 28 O 1.44424 * 110.37216 * 62.94566 * 23 3 2 29 29 H 4.18737 * 15.04036 * 359.97438 * 4 2 1 30 30 H 0.97002 * 119.99579 * 264.99964 * 5 3 2 31 31 H 0.97001 * 120.00446 * 5.12942 * 8 6 5 32 32 H 1.08001 * 120.25098 * 0.02697 * 10 9 8 33 33 H 1.07995 * 120.66242 * 179.77774 * 11 10 9 34 34 H 1.07996 * 120.43323 * 180.22696 * 12 11 10 35 35 H 0.96993 * 120.00329 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.51058 * 335.83427 * 25 23 3 37 37 H 1.09005 * 110.51098 * 98.40696 * 25 23 3 38 38 H 1.09001 * 110.51431 * 118.64554 * 26 25 23 39 39 H 1.09006 * 110.50798 * 241.21572 * 26 25 23 40 40 H 1.09002 * 110.36965 * 142.81611 * 27 26 25 41 41 H 1.08999 * 110.37426 * 265.03626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -1.0259 -0.0437 5 7 3.1340 0.6400 1.2245 6 6 3.2631 -0.0811 2.3558 7 8 2.9742 -1.2620 2.3602 8 7 3.7115 0.5072 3.4824 9 6 3.9469 -0.2584 4.6215 10 6 4.5179 0.3387 5.7478 11 6 4.7563 -0.4264 6.8791 12 6 4.4088 -1.7654 6.8603 13 6 3.8324 -2.3066 5.6978 14 6 3.4716 -3.6726 5.6636 15 1 3.6392 -4.2973 6.5285 16 6 2.8967 -4.2161 4.5082 17 7 2.6942 -3.4600 3.4609 18 14 2.4191 -6.0215 4.4631 19 1 1.4177 -6.2952 5.5249 20 1 1.8361 -6.3463 3.1366 21 1 3.6245 -6.8582 4.6919 22 7 3.6230 -1.5372 4.6247 23 6 3.1557 0.7747 -1.2174 24 1 2.7902 0.3176 -2.1370 25 6 4.6997 0.8216 -1.2170 26 6 5.0326 2.2325 -1.7515 27 6 3.6502 2.8709 -2.0122 28 8 2.7421 2.1565 -1.1439 29 1 -1.0500 -0.0011 0.0004 30 1 3.3642 1.5822 1.2210 31 1 3.8705 1.4640 3.4998 32 1 4.7752 1.3875 5.7361 33 1 5.2003 0.0150 7.7591 34 1 4.5784 -2.3869 7.7271 35 1 2.2964 -3.8366 2.6605 36 1 5.0854 0.6957 -0.2054 37 1 5.1053 0.0552 -1.8775 38 1 5.5829 2.8042 -1.0042 39 1 5.6048 2.1652 -2.6769 40 1 3.6669 3.9301 -1.7553 41 1 3.3618 2.7388 -3.0550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:45 Heat of formation + Delta-G solvation = 27.926909 kcal Electronic energy + Delta-G solvation = -26171.101495 eV Core-core repulsion = 22439.163911 eV Total energy + Delta-G solvation = -3731.937583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38348 -40.46396 -39.37098 -36.52959 -35.71004 -34.82089 -33.42572 -32.94101 -32.17893 -31.27185 -30.26926 -27.51784 -26.77823 -24.01265 -23.19703 -22.92889 -21.91320 -21.55377 -19.85235 -19.36372 -18.89988 -18.07391 -17.29112 -16.96108 -16.47641 -16.43456 -16.24413 -16.08933 -15.61342 -15.50249 -14.95214 -14.67492 -14.59246 -14.56654 -13.89234 -13.73557 -13.55057 -12.86784 -12.71619 -12.64526 -12.54976 -12.50001 -12.29720 -12.16681 -11.77607 -11.56444 -11.53040 -11.50289 -11.10805 -10.86010 -10.84965 -10.74742 -10.08911 -9.85751 -9.09220 -8.77829 -7.99937 -6.38975 0.98742 1.30193 1.39904 1.41878 1.51574 1.54850 1.90319 2.19724 2.28059 2.54188 2.87800 3.05348 3.30575 3.41531 3.69639 3.90948 4.01657 4.09909 4.21634 4.31754 4.37080 4.44091 4.51801 4.74593 4.76338 4.86872 4.90741 4.98701 5.01718 5.05648 5.07983 5.15266 5.20311 5.28788 5.56691 5.68636 5.86334 5.87536 5.94140 6.03575 6.31708 6.43424 6.69675 6.84117 7.09321 7.22826 7.99323 8.39779 8.60337 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014056 B = 0.004224 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.568953 B = 6627.711374 C = 7860.703454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.221 4.221 3 C 0.285 3.715 4 H 0.099 0.901 5 N -0.721 5.721 6 C 0.660 3.340 7 O -0.508 6.508 8 N -0.660 5.660 9 C 0.364 3.636 10 C -0.346 4.346 11 C -0.033 4.033 12 C -0.331 4.331 13 C 0.238 3.762 14 C -0.467 4.467 15 H 0.085 0.915 16 C 0.011 3.989 17 N -0.684 5.684 18 Si 0.972 3.028 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.259 1.259 22 N -0.505 5.505 23 C 0.085 3.915 24 H 0.096 0.904 25 C -0.152 4.152 26 C -0.146 4.146 27 C 0.038 3.962 28 O -0.386 6.386 29 H 0.243 0.757 30 H 0.406 0.594 31 H 0.416 0.584 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 12.206 -13.590 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.222 4.222 3 C 0.179 3.821 4 H 0.116 0.884 5 N -0.381 5.381 6 C 0.358 3.642 7 O -0.376 6.376 8 N -0.311 5.311 9 C 0.125 3.875 10 C -0.371 4.371 11 C -0.057 4.057 12 C -0.354 4.354 13 C 0.112 3.888 14 C -0.498 4.498 15 H 0.103 0.897 16 C -0.215 4.215 17 N -0.303 5.303 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.184 1.184 22 N -0.224 5.224 23 C 0.027 3.973 24 H 0.114 0.886 25 C -0.190 4.190 26 C -0.183 4.183 27 C -0.038 4.038 28 O -0.305 6.305 29 H 0.259 0.741 30 H 0.242 0.758 31 H 0.253 0.747 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.467 10.806 -14.488 18.133 hybrid contribution 0.135 0.322 0.833 0.903 sum 1.602 11.127 -13.655 17.687 Atomic orbital electron populations 1.25645 0.96849 1.00243 0.98419 1.23914 0.95666 1.00827 1.01840 1.17599 0.83137 0.97665 0.83703 0.88367 1.44907 1.71780 1.13506 1.07917 1.16690 0.80248 0.86173 0.81059 1.91384 1.50272 1.13366 1.82535 1.42376 1.68811 1.10913 1.08982 1.18841 0.92602 0.90493 0.85596 1.20904 1.19769 1.01062 0.95373 1.21012 0.94817 0.92832 0.97052 1.21807 1.16116 0.97183 1.00309 1.18868 0.89000 0.93807 0.87108 1.19867 1.35880 0.93886 1.00188 0.89659 1.27024 0.95605 1.03730 0.95125 1.70547 1.22778 1.35985 1.00943 0.85434 0.79371 0.77706 0.78199 1.18550 1.20005 1.18363 1.68657 1.23472 1.02479 1.27807 1.23196 0.94766 0.83762 0.95621 0.88581 1.22997 0.93568 0.99315 1.03108 1.22911 0.97914 0.94583 1.02940 1.23651 0.87777 0.97700 0.94660 1.89202 1.55455 1.18177 1.67703 0.74106 0.75800 0.74689 0.85105 0.84470 0.87776 0.92126 0.91299 0.88918 0.90150 0.88571 0.87745 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.89 19.25 74.32 1.43 -4.46 16 2 C -0.22 -7.40 12.58 31.12 0.39 -7.01 16 3 C 0.28 8.69 2.30 43.18 0.10 8.79 16 4 H 0.10 3.42 7.58 -2.39 -0.02 3.40 16 5 N -0.72 -22.98 4.04 -466.59 -1.88 -24.86 16 6 C 0.66 28.32 8.47 179.05 1.52 29.84 16 7 O -0.51 -27.46 11.77 -3.94 -0.05 -27.50 16 8 N -0.66 -26.77 5.39 -322.12 -1.74 -28.51 16 9 C 0.36 18.19 7.43 133.26 0.99 19.18 16 10 C -0.35 -15.07 9.95 22.72 0.23 -14.84 16 11 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 12 C -0.33 -17.07 9.83 22.87 0.22 -16.85 16 13 C 0.24 14.05 6.55 40.19 0.26 14.31 16 14 C -0.47 -27.24 9.14 23.46 0.21 -27.03 16 15 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 16 C 0.01 0.61 5.50 85.29 0.47 1.08 16 17 N -0.68 -40.55 8.99 21.84 0.20 -40.35 16 18 Si 0.97 41.73 29.56 68.60 2.03 43.75 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 N -0.50 -29.78 5.74 -186.36 -1.07 -30.85 16 23 C 0.08 1.84 3.00 31.09 0.09 1.93 16 24 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 25 C -0.15 -2.70 6.53 31.61 0.21 -2.49 16 26 C -0.15 -1.82 7.09 31.61 0.22 -1.60 16 27 C 0.04 0.53 7.63 72.48 0.55 1.08 16 28 O -0.39 -8.46 10.50 -148.98 -1.56 -10.02 16 29 H 0.24 5.32 7.80 -4.42 -0.03 5.29 16 30 H 0.41 10.56 8.15 -92.71 -0.76 9.81 16 31 H 0.42 12.62 8.71 -92.71 -0.81 11.81 16 32 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 34 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 36 H 0.07 1.50 7.13 -2.39 -0.02 1.48 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.97 351.24 2.56 -76.41 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -0.49 Total: 41.22 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 7.13 Total: 0.70 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -4.49 Total: -124.57 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.61 Total: -37.52 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -78.97 2.56 -76.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.338 kcal (2) G-P(sol) polarization free energy of solvation -78.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds