Wall clock time and date at job start Tue Mar 31 2020 10:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 C 1.52996 * 109.47334 * 239.99909 * 2 1 3 5 5 C 1.50706 * 109.47007 * 119.99915 * 2 1 3 6 6 N 1.29932 * 125.37335 * 59.98852 * 5 2 1 7 7 C 1.36073 * 108.47846 * 180.02562 * 6 5 2 8 8 C 1.47377 * 126.45236 * 180.02562 * 7 6 5 9 9 O 1.21603 * 119.99684 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99737 * 359.97438 * 8 7 6 11 11 C 1.39175 * 119.99553 * 174.84229 * 10 8 7 12 12 C 1.39695 * 119.57522 * 185.71309 * 11 10 8 13 13 C 1.38644 * 119.49665 * 180.02562 * 12 11 10 14 14 C 1.38359 * 118.66641 * 359.97438 * 13 12 11 15 15 C 1.40570 * 119.13861 * 0.02562 * 14 13 12 16 16 C 1.41337 * 119.78867 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99659 * 5.68787 * 16 15 14 18 18 C 1.40026 * 120.00165 * 185.68945 * 16 15 14 19 19 N 1.30749 * 119.99862 * 354.92128 * 18 16 15 20 20 Si 1.86798 * 120.00195 * 174.91547 * 18 16 15 21 21 H 1.48498 * 109.46941 * 95.00075 * 20 18 16 22 22 H 1.48499 * 109.47275 * 215.00009 * 20 18 16 23 23 H 1.48505 * 109.47021 * 335.00235 * 20 18 16 24 24 N 1.31921 * 119.57690 * 5.44067 * 11 10 8 25 25 C 1.36123 * 107.09504 * 359.97438 * 7 6 5 26 26 O 1.34043 * 125.37294 * 240.02133 * 5 2 1 27 27 H 1.09007 * 109.47048 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.46965 * 59.99952 * 1 2 3 29 29 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46820 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47243 * 300.00431 * 3 2 1 32 32 H 1.09001 * 109.46735 * 59.99843 * 3 2 1 33 33 H 1.09004 * 109.47469 * 300.00452 * 4 2 1 34 34 H 1.09010 * 109.47150 * 59.99839 * 4 2 1 35 35 H 1.09000 * 109.47287 * 179.97438 * 4 2 1 36 36 H 0.96993 * 120.00487 * 354.84135 * 10 8 7 37 37 H 1.08005 * 120.25550 * 359.97238 * 12 11 10 38 38 H 1.07996 * 120.67100 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.43132 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00026 * 179.97438 * 19 18 16 41 41 H 1.07999 * 126.52930 * 180.25962 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7834 -1.9478 1.5390 7 6 2.4034 -2.2319 2.7165 8 6 2.3829 -3.5224 3.4278 9 8 2.9822 -3.6471 4.4785 10 7 1.6999 -4.5644 2.9138 11 6 1.7677 -5.8116 3.5276 12 6 1.1553 -6.9119 2.9228 13 6 1.2234 -8.1535 3.5360 14 6 1.9016 -8.2645 4.7369 15 6 2.4970 -7.1199 5.2949 16 6 3.1927 -7.2174 6.5213 17 1 3.3449 -8.1830 6.9804 18 6 3.6846 -6.0621 7.1410 19 7 3.5884 -4.9056 6.5386 20 14 4.4783 -6.1730 8.8284 21 1 5.9507 -6.2902 8.6761 22 1 4.1570 -4.9506 9.6079 23 1 3.9579 -7.3666 9.5426 24 7 2.4141 -5.9407 4.6704 25 6 3.0471 -1.0999 3.1130 26 8 2.8059 -0.1653 2.1798 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1301 -0.7208 -1.2494 36 1 1.1612 -4.4451 2.1161 37 1 0.6320 -6.7962 1.9852 38 1 0.7571 -9.0170 3.0850 39 1 1.9719 -9.2179 5.2394 40 1 3.9288 -4.1053 6.9681 41 1 3.6418 -0.9780 4.0063 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:43 Heat of formation + Delta-G solvation = 34.847216 kcal Electronic energy + Delta-G solvation = -25790.227781 eV Core-core repulsion = 22058.590284 eV Total energy + Delta-G solvation = -3731.637496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.32435 -39.16379 -37.45701 -37.14933 -34.56937 -34.11249 -32.97099 -30.32487 -29.78669 -28.92001 -27.63977 -27.57631 -25.63627 -24.06528 -23.21842 -21.74597 -21.12907 -19.97880 -19.14208 -17.93500 -17.19993 -16.70570 -16.08944 -15.97627 -15.36878 -14.68786 -14.42593 -14.35170 -14.34246 -14.05410 -13.67330 -13.32154 -13.30700 -12.75420 -12.63127 -12.55684 -12.13117 -11.97188 -11.91699 -11.87261 -11.45520 -11.28250 -11.18872 -10.94814 -10.92837 -10.64926 -10.63123 -10.46605 -9.94545 -9.67346 -9.26795 -9.01025 -8.80969 -7.95659 -7.24963 -6.94690 -6.14863 -4.38695 1.35168 2.22891 2.61268 2.87264 3.14302 3.17628 3.20253 3.28748 3.63118 3.94513 4.06906 4.12216 4.48951 4.56237 4.70160 4.93879 5.07636 5.18372 5.28191 5.32253 5.44110 5.46074 5.54461 5.57554 5.72505 5.77216 5.87639 5.98911 6.01492 6.04429 6.11698 6.23840 6.52607 6.70265 6.85524 6.86791 7.24045 7.52545 7.60707 7.68449 7.82778 8.08395 8.20620 8.47884 8.74302 9.04759 9.19718 10.24260 10.48563 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.003576 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.994235 B = 7828.716837 C = 9186.271130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.034 3.966 3 C -0.147 4.147 4 C -0.140 4.140 5 C 0.194 3.806 6 N -0.457 5.457 7 C -0.055 4.055 8 C 0.558 3.442 9 O -0.403 6.403 10 N -0.649 5.649 11 C 0.372 3.628 12 C -0.352 4.352 13 C -0.036 4.036 14 C -0.303 4.303 15 C 0.272 3.728 16 C -0.426 4.426 17 H 0.083 0.917 18 C 0.059 3.941 19 N -0.661 5.661 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.263 1.263 24 N -0.475 5.475 25 C -0.005 4.005 26 O -0.198 6.198 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.407 0.593 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 13.331 -12.016 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 C -0.204 4.204 4 C -0.197 4.197 5 C -0.015 4.015 6 N -0.187 5.187 7 C -0.176 4.176 8 C 0.338 3.662 9 O -0.267 6.267 10 N -0.295 5.295 11 C 0.133 3.867 12 C -0.377 4.377 13 C -0.061 4.061 14 C -0.327 4.327 15 C 0.146 3.854 16 C -0.457 4.457 17 H 0.101 0.899 18 C -0.170 4.170 19 N -0.280 5.280 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.187 1.187 24 N -0.194 5.194 25 C -0.078 4.078 26 O -0.084 6.084 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.242 0.758 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.372 13.857 -11.149 17.943 hybrid contribution 0.082 -0.315 0.395 0.512 sum -2.290 13.542 -10.754 17.444 Atomic orbital electron populations 1.21908 0.91665 1.03658 1.02509 1.19104 0.96451 0.94390 0.86806 1.21916 1.01916 0.93670 1.02921 1.21908 1.01537 1.01382 0.94918 1.26149 0.93621 0.88875 0.92852 1.70710 1.21887 1.13288 1.12857 1.22379 1.02831 0.97794 0.94576 1.17104 0.82151 0.81468 0.85462 1.91275 1.37946 1.80204 1.17263 1.43111 1.48514 1.07824 1.30060 1.18586 0.93419 0.83096 0.91583 1.20509 1.18587 0.93755 1.04885 1.20569 0.95901 0.95147 0.94447 1.21636 1.11441 0.99422 1.00160 1.18385 0.89374 0.85645 0.91960 1.19570 1.29088 0.94220 1.02796 0.89913 1.26171 0.96186 0.95624 0.98971 1.70329 1.25987 0.98226 1.33425 0.86489 0.79865 0.78816 0.82704 1.19740 1.20295 1.18689 1.68695 1.19851 1.25025 1.05833 1.25265 1.01806 0.86333 0.94366 1.84343 1.54590 1.40870 1.28607 0.92201 0.91054 0.90957 0.91796 0.91052 0.91803 0.90950 0.91060 0.92194 0.75791 0.88929 0.88515 0.88487 0.91720 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.46 37.16 0.31 -0.82 16 2 C 0.03 0.31 0.99 -155.66 -0.15 0.15 16 3 C -0.15 -1.07 8.01 37.16 0.30 -0.77 16 4 C -0.14 -1.15 8.45 37.16 0.31 -0.83 16 5 C 0.19 2.55 6.44 -13.08 -0.08 2.47 16 6 N -0.46 -7.18 11.06 -7.66 -0.08 -7.26 16 7 C -0.06 -0.98 6.99 -83.03 -0.58 -1.56 16 8 C 0.56 12.24 7.77 -12.54 -0.10 12.14 16 9 O -0.40 -10.33 12.71 5.28 0.07 -10.26 16 10 N -0.65 -14.14 5.38 -12.39 -0.07 -14.20 16 11 C 0.37 9.45 7.43 -155.05 -1.15 8.30 16 12 C -0.35 -8.20 9.95 -38.89 -0.39 -8.59 16 13 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 14 C -0.30 -7.76 9.83 -38.66 -0.38 -8.14 16 15 C 0.27 7.74 6.54 -85.00 -0.56 7.19 16 16 C -0.43 -11.81 9.13 -37.73 -0.34 -12.16 16 17 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 18 C 0.06 1.56 5.49 -17.34 -0.10 1.47 16 19 N -0.66 -18.32 9.07 55.55 0.50 -17.82 16 20 Si 0.90 19.28 29.56 -169.99 -5.03 14.25 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 N -0.47 -13.62 5.74 -10.27 -0.06 -13.68 16 25 C 0.00 -0.07 11.95 29.97 0.36 0.29 16 26 O -0.20 -2.67 10.11 6.52 0.07 -2.61 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.41 7.60 8.43 -40.82 -0.34 7.25 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 38 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 40 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 41 H 0.23 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -33.14 352.62 -7.62 -40.76 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.39 Total: 7.61 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.95 Total: -2.11 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.29 Total: -52.96 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.13 Total: -12.87 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.14 -7.62 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.602 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds