Wall clock time and date at job start Tue Mar 31 2020 10:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 C 1.52996 * 109.47334 * 239.99909 * 2 1 3 5 5 C 1.50706 * 109.47007 * 119.99915 * 2 1 3 6 6 N 1.29932 * 125.37335 * 59.98852 * 5 2 1 7 7 C 1.36073 * 108.47846 * 180.02562 * 6 5 2 8 8 C 1.47377 * 126.45236 * 180.02562 * 7 6 5 9 9 O 1.21603 * 119.99684 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99737 * 359.97438 * 8 7 6 11 11 C 1.39175 * 119.99553 * 174.84229 * 10 8 7 12 12 C 1.39695 * 119.57522 * 185.71309 * 11 10 8 13 13 C 1.38644 * 119.49665 * 180.02562 * 12 11 10 14 14 C 1.38359 * 118.66641 * 359.97438 * 13 12 11 15 15 C 1.40570 * 119.13861 * 0.02562 * 14 13 12 16 16 C 1.41337 * 119.78867 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99659 * 5.68787 * 16 15 14 18 18 C 1.40026 * 120.00165 * 185.68945 * 16 15 14 19 19 N 1.30749 * 119.99862 * 354.92128 * 18 16 15 20 20 Si 1.86798 * 120.00195 * 174.91547 * 18 16 15 21 21 H 1.48498 * 109.46941 * 95.00075 * 20 18 16 22 22 H 1.48499 * 109.47275 * 215.00009 * 20 18 16 23 23 H 1.48505 * 109.47021 * 335.00235 * 20 18 16 24 24 N 1.31921 * 119.57690 * 5.44067 * 11 10 8 25 25 C 1.36123 * 107.09504 * 359.97438 * 7 6 5 26 26 O 1.34043 * 125.37294 * 240.02133 * 5 2 1 27 27 H 1.09007 * 109.47048 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.46965 * 59.99952 * 1 2 3 29 29 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46820 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47243 * 300.00431 * 3 2 1 32 32 H 1.09001 * 109.46735 * 59.99843 * 3 2 1 33 33 H 1.09004 * 109.47469 * 300.00452 * 4 2 1 34 34 H 1.09010 * 109.47150 * 59.99839 * 4 2 1 35 35 H 1.09000 * 109.47287 * 179.97438 * 4 2 1 36 36 H 0.96993 * 120.00487 * 354.84135 * 10 8 7 37 37 H 1.08005 * 120.25550 * 359.97238 * 12 11 10 38 38 H 1.07996 * 120.67100 * 180.02562 * 13 12 11 39 39 H 1.08004 * 120.43132 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00026 * 179.97438 * 19 18 16 41 41 H 1.07999 * 126.52930 * 180.25962 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7834 -1.9478 1.5390 7 6 2.4034 -2.2319 2.7165 8 6 2.3829 -3.5224 3.4278 9 8 2.9822 -3.6471 4.4785 10 7 1.6999 -4.5644 2.9138 11 6 1.7677 -5.8116 3.5276 12 6 1.1553 -6.9119 2.9228 13 6 1.2234 -8.1535 3.5360 14 6 1.9016 -8.2645 4.7369 15 6 2.4970 -7.1199 5.2949 16 6 3.1927 -7.2174 6.5213 17 1 3.3449 -8.1830 6.9804 18 6 3.6846 -6.0621 7.1410 19 7 3.5884 -4.9056 6.5386 20 14 4.4783 -6.1730 8.8284 21 1 5.9507 -6.2902 8.6761 22 1 4.1570 -4.9506 9.6079 23 1 3.9579 -7.3666 9.5426 24 7 2.4141 -5.9407 4.6704 25 6 3.0471 -1.0999 3.1130 26 8 2.8059 -0.1653 2.1798 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1301 -0.7208 -1.2494 36 1 1.1612 -4.4451 2.1161 37 1 0.6320 -6.7962 1.9852 38 1 0.7571 -9.0170 3.0850 39 1 1.9719 -9.2179 5.2394 40 1 3.9288 -4.1053 6.9681 41 1 3.6418 -0.9780 4.0063 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882468598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:43 Heat of formation + Delta-G solvation = 12.641134 kcal Electronic energy + Delta-G solvation = -25791.190709 eV Core-core repulsion = 22058.590284 eV Total energy + Delta-G solvation = -3732.600424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.49627 -40.96795 -39.27400 -37.93119 -36.01801 -35.78153 -34.85874 -32.27131 -31.27586 -30.57610 -28.25315 -28.21031 -27.57495 -25.61050 -24.24170 -23.52803 -22.88517 -21.39653 -20.47483 -19.60175 -18.65273 -17.98380 -17.85153 -17.32652 -16.50853 -16.30337 -16.21462 -15.88042 -15.63395 -15.18585 -14.98559 -14.92988 -14.62870 -14.38971 -14.05149 -13.72470 -13.23921 -13.07847 -12.91732 -12.73826 -12.60724 -12.58967 -12.57193 -12.36599 -12.33930 -12.04803 -11.94864 -11.79427 -11.72987 -11.54378 -11.04701 -10.89979 -10.04676 -9.92915 -9.19799 -8.87680 -8.08181 -6.43447 0.08929 0.81892 1.11185 1.29837 1.40695 1.52007 1.52266 1.56297 2.13888 2.26865 2.46266 2.77056 2.98921 3.65634 3.70589 3.89974 3.96671 4.02082 4.08032 4.34982 4.44233 4.58331 4.68844 4.75257 4.75855 4.81377 4.85221 4.93737 4.95092 4.96105 4.96629 5.01549 5.09816 5.27064 5.29460 5.35521 5.39574 5.65391 5.78448 5.89682 6.11334 6.29699 6.44064 6.67017 6.80625 7.04343 7.46193 8.28502 8.55804 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018014 B = 0.003576 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.994235 B = 7828.716837 C = 9186.271130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.031 3.969 3 C -0.143 4.143 4 C -0.138 4.138 5 C 0.205 3.795 6 N -0.475 5.475 7 C -0.086 4.086 8 C 0.554 3.446 9 O -0.447 6.447 10 N -0.642 5.642 11 C 0.348 3.652 12 C -0.345 4.345 13 C -0.033 4.033 14 C -0.324 4.324 15 C 0.236 3.764 16 C -0.463 4.463 17 H 0.088 0.912 18 C 0.012 3.988 19 N -0.696 5.696 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.256 1.256 24 N -0.508 5.508 25 C 0.014 3.986 26 O -0.190 6.190 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.420 0.580 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 14.581 -13.561 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.005 4.005 6 N -0.205 5.205 7 C -0.205 4.205 8 C 0.337 3.663 9 O -0.314 6.314 10 N -0.290 5.290 11 C 0.110 3.890 12 C -0.371 4.371 13 C -0.057 4.057 14 C -0.347 4.347 15 C 0.110 3.890 16 C -0.494 4.494 17 H 0.106 0.894 18 C -0.214 4.214 19 N -0.316 5.316 20 Si 0.799 3.201 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.179 1.179 24 N -0.228 5.228 25 C -0.059 4.059 26 O -0.076 6.076 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.955 15.099 -12.749 19.981 hybrid contribution 0.157 -0.662 0.667 0.953 sum -2.799 14.437 -12.082 19.033 Atomic orbital electron populations 1.21924 0.90679 1.03061 1.03842 1.19487 0.97137 0.95309 0.85116 1.21932 1.01732 0.92197 1.04229 1.21923 1.01236 1.00779 0.95580 1.27178 0.91846 0.88273 0.93154 1.70659 1.22728 1.14783 1.12339 1.21844 1.05764 0.96779 0.96126 1.17588 0.81020 0.82538 0.85144 1.91258 1.39612 1.81280 1.19205 1.43104 1.48655 1.06994 1.30216 1.19075 0.93491 0.84975 0.91446 1.20951 1.17251 0.93165 1.05695 1.21037 0.94669 0.96554 0.93419 1.21844 1.12224 0.99174 1.01484 1.18908 0.90418 0.86758 0.92879 1.19917 1.30720 0.95144 1.03647 0.89389 1.27061 0.96397 0.94842 1.03062 1.70511 1.26988 0.98836 1.35216 0.85259 0.78709 0.78982 0.77118 1.19083 1.19687 1.17936 1.68654 1.21222 1.25629 1.07310 1.25562 1.00261 0.85579 0.94528 1.84398 1.54551 1.40242 1.28420 0.92658 0.87954 0.92522 0.92120 0.88212 0.92092 0.92545 0.87945 0.92701 0.74258 0.85454 0.84251 0.87327 0.91717 0.73715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.46 71.98 0.61 -1.30 16 2 C 0.03 0.49 0.99 -52.93 -0.05 0.44 16 3 C -0.14 -1.64 8.01 71.98 0.58 -1.07 16 4 C -0.14 -1.93 8.45 71.98 0.61 -1.32 16 5 C 0.21 5.16 6.44 88.39 0.57 5.73 16 6 N -0.48 -14.84 11.06 -293.05 -3.24 -18.08 16 7 C -0.09 -3.09 6.99 40.40 0.28 -2.81 16 8 C 0.55 25.25 7.77 86.65 0.67 25.92 16 9 O -0.45 -24.04 12.71 -4.04 -0.05 -24.09 16 10 N -0.64 -28.64 5.38 -311.38 -1.67 -30.32 16 11 C 0.35 18.07 7.43 133.28 0.99 19.06 16 12 C -0.35 -15.76 9.95 22.72 0.23 -15.53 16 13 C -0.03 -1.47 10.15 22.40 0.23 -1.25 16 14 C -0.32 -16.74 9.83 22.87 0.22 -16.52 16 15 C 0.24 13.93 6.54 40.19 0.26 14.19 16 16 C -0.46 -26.67 9.13 23.47 0.21 -26.45 16 17 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 18 C 0.01 0.63 5.49 85.29 0.47 1.10 16 19 N -0.70 -40.29 9.07 21.84 0.20 -40.09 16 20 Si 0.98 40.72 29.56 68.60 2.03 42.75 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 24 N -0.51 -30.28 5.74 -186.40 -1.07 -31.35 16 25 C 0.01 0.43 11.95 67.33 0.80 1.23 16 26 O -0.19 -4.91 10.11 0.40 0.00 -4.90 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.42 15.81 8.43 -92.71 -0.78 15.03 16 37 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.14 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.11 5.17 8.06 -2.91 -0.02 5.14 16 40 H 0.27 14.62 8.29 -92.71 -0.77 13.85 16 41 H 0.25 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -75.67 352.62 3.16 -72.51 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.28 Total: 32.15 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.68 Total: 1.42 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.79 Total: -119.84 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -75.67 3.16 -72.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.155 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds